BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.11 - phase: 0
(143 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76975 homologue to GP|6984222|gb|AAF34799.1| 40S ribosomal pro... 287 9e-79
TC76973 homologue to GP|6984222|gb|AAF34799.1| 40S ribosomal pro... 274 8e-75
TC76976 GP|6984222|gb|AAF34799.1| 40S ribosomal protein S16 {Eup... 60 2e-10
TC83610 similar to SP|Q9LNQ4|ALA4_ARATH Potential phospholipid-t... 28 1.2
BE203724 homologue to PIR|E96681|E96 protein F1E22.4 [imported] ... 27 3.6
BQ148704 similar to PIR|F96829|F96 hypothetical protein F19K16.1... 26 4.7
BQ751759 weakly similar to PIR|JQ0405|JQ0 hypothetical 119.5K pr... 25 8.1
>TC76975 homologue to GP|6984222|gb|AAF34799.1| 40S ribosomal protein S16
{Euphorbia esula}, partial (96%)
Length = 728
Score = 287 bits (735), Expect = 9e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 1 MEKLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRF 60
MEKLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRF
Sbjct: 86 MEKLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRF 265
Query: 61 AGVDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD 120
AGVDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 266 AGVDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD 445
Query: 121 PRRCEPKKFGGRGARARFQKSYR 143
PRRCEPKKFGGRGARARFQKSYR
Sbjct: 446 PRRCEPKKFGGRGARARFQKSYR 514
>TC76973 homologue to GP|6984222|gb|AAF34799.1| 40S ribosomal protein S16
{Euphorbia esula}, partial (96%)
Length = 665
Score = 274 bits (701), Expect = 8e-75
Identities = 134/143 (93%), Positives = 140/143 (97%)
Frame = +3
Query: 1 MEKLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRF 60
+ K+EQVQCFGRKKNAVAVT+CKRGRGLIKING PIELVEPEILRFKA+EPILLLG+HRF
Sbjct: 57 LSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 236
Query: 61 AGVDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD 120
AGVDMRIRV GGGHT+QIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 237 AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVAD 416
Query: 121 PRRCEPKKFGGRGARARFQKSYR 143
PRRCEPKKFGGRGARARFQKSYR
Sbjct: 417 PRRCEPKKFGGRGARARFQKSYR 485
>TC76976 GP|6984222|gb|AAF34799.1| 40S ribosomal protein S16 {Euphorbia
esula}, partial (18%)
Length = 248
Score = 60.5 bits (145), Expect = 2e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 117 LVADPRRCEPKKFGGRGARARFQKSYR 143
LVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 34 LVADPRRCEPKKFGGRGARARFQKSYR 114
>TC83610 similar to SP|Q9LNQ4|ALA4_ARATH Potential phospholipid-transporting
ATPase 4 (EC 3.6.3.1) (Aminophospholipid flippase 4).,
partial (30%)
Length = 1131
Score = 28.1 bits (61), Expect = 1.2
Identities = 23/81 (28%), Positives = 35/81 (42%), Gaps = 1/81 (1%)
Frame = -2
Query: 9 CFGRKKNAVA-VTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVDMRI 67
CF N + +TYCK G P L ++ ++ LLLG+H A D R
Sbjct: 275 CFLYHANIICTITYCKSGL--------------PSSLFYQPYDQCLLLGRHTTA--DDRC 144
Query: 68 RVNGGGHTAQIYAIRQSIAKA 88
+N ++Y I SI ++
Sbjct: 143 TINC*SQKLELYIIF*SICQS 81
>BE203724 homologue to PIR|E96681|E96 protein F1E22.4 [imported] -
Arabidopsis thaliana, partial (31%)
Length = 507
Score = 26.6 bits (57), Expect = 3.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 60 FAGVDMRIRVNGGGHTAQI--YAIRQSIAKALV 90
FA V+ R+R GGG T + IR+ AK L+
Sbjct: 41 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLL 139
>BQ148704 similar to PIR|F96829|F96 hypothetical protein F19K16.18 [imported]
- Arabidopsis thaliana, partial (26%)
Length = 618
Score = 26.2 bits (56), Expect = 4.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 33 GAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
G+ + L + E+ +A E ILLL KHRF G+
Sbjct: 153 GSAVSLEKRELFEERA-ETILLLIKHRFPGI 242
>BQ751759 weakly similar to PIR|JQ0405|JQ0 hypothetical 119.5K protein (uvrA
region) - Micrococcus luteus, partial (2%)
Length = 440
Score = 25.4 bits (54), Expect = 8.1
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Frame = -1
Query: 111 RYDRTLLVADP--------RRCEPKKFGGRGAR 135
R R LLV P RRC P +FG RG R
Sbjct: 287 RGPRRLLVRHPGHPQLRRRRRCRPGRFGQRGQR 189
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,613,541
Number of Sequences: 36976
Number of extensions: 37276
Number of successful extensions: 232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of query: 143
length of database: 9,014,727
effective HSP length: 87
effective length of query: 56
effective length of database: 5,797,815
effective search space: 324677640
effective search space used: 324677640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148528.11