TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148485.3 - phase: 0 /pseudo
         (138 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ138652 similar to GP|20522008|d pleiotropic drug resistance li...    50  4e-07
TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20 ...    29  0.52

>BQ138652 similar to GP|20522008|d pleiotropic drug resistance like protein
           {Nicotiana tabacum}, partial (15%)
          Length = 670

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 19/42 (45%), Positives = 31/42 (73%)
 Frame = +2

Query: 93  KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
           + +K N++T Y+++ILGL+ CADT+VG  M+RG   G K+ +
Sbjct: 170 EGQKANLITDYVLRILGLEICADTVVGNAMLRGISGGQKKRV 295


>TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20
           {Arabidopsis thaliana}, partial (44%)
          Length = 1366

 Score = 29.3 bits (64), Expect = 0.52
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 109 GLDFCADTMVGGDMIRGTLSGPKRELEL 136
           GL  CADT VG   +RG   G K+ L L
Sbjct: 729 GLVSCADTNVGDAKVRGISGGEKKRLSL 812


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.351    0.160    0.530 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,501,223
Number of Sequences: 36976
Number of extensions: 35406
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of query: 138
length of database: 9,014,727
effective HSP length: 86
effective length of query: 52
effective length of database: 5,834,791
effective search space: 303409132
effective search space used: 303409132
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 53 (25.0 bits)