TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148484.3 + phase: 0 /pseudo
         (341 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC88990 similar to PIR|T11751|T11751 transcription repressor ROM...   627  0.0
BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ea...    33  0.16
TC83004 similar to PIR|T10985|T10985 regulator protein ROM2 - ki...    32  0.27
TC76675 SP|P46259|TBA1_PEA Tubulin alpha-1 chain. [Garden pea] {...    30  1.3
TC77711 similar to PIR|T46160|T46160 caffeic acid O-methyltransf...    29  2.3
TC83602 similar to GP|22136892|gb|AAM91790.1 unknown protein {Ar...    29  3.0
TC80878 weakly similar to PIR|A85364|A85364 hypothetical protein...    28  3.9
TC81071 weakly similar to PIR|T52653|T52653 probable sigma-like ...    28  3.9
TC91297 similar to GP|4337192|gb|AAD18106.1| unknown protein {Ar...    28  3.9
TC85777 similar to PIR|F86442|F86442 unknown protein [imported] ...    28  3.9
TC88265 weakly similar to GP|18176104|gb|AAL59984.1 unknown prot...    28  6.7
TC91520 similar to GP|15215816|gb|AAK91453.1 At2g26990/T20P8.4 {...    28  6.7
TC90816 similar to PIR|G84687|G84687 probable disease resistance...    27  8.7
TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein...    27  8.7

>TC88990 similar to PIR|T11751|T11751 transcription repressor ROM1 - kidney
           bean, partial (91%)
          Length = 1528

 Score =  627 bits (1618), Expect(2) = 0.0
 Identities = 317/320 (99%), Positives = 317/320 (99%)
 Frame = +2

Query: 22  RKYQHQQYNHHIQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASIL*WHHTGLQ 81
           RKYQHQQYNHHIQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASIL*WHHTGLQ
Sbjct: 263 RKYQHQQYNHHIQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASIL*WHHTGLQ 442

Query: 82  FRILQCSLLGISMLILAW**LQVLCTKLQSLKGRDLMERIRIHLKNRRALLQIQAPKQER 141
           FRILQCSLLGISMLILAW**LQVLCTKLQSLKGRDLMERIRIHLKNRRALLQIQAPKQER
Sbjct: 443 FRILQCSLLGISMLILAW**LQVLCTKLQSLKGRDLMERIRIHLKNRRALLQIQAPKQER 622

Query: 142 VERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETRREALTSCLLMEPTRRTILLDP 201
           VERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETRREALTSCLLMEPTRRTILLDP
Sbjct: 623 VERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETRREALTSCLLMEPTRRTILLDP 802

Query: 202 FLNHLFLEILLSRYLQLILILEWTYGMHLLLVLKPPK*DTINLVLLELVHLVNSGCNKMI 261
           FLNHLFLEILLSRYLQLILILEWTYGMHLLLVLKPPK*DT NLVLLELVHLVNSGCNKMI
Sbjct: 803 FLNHLFLEILLSRYLQLILILEWTYGMHLLLVLKPPK*DTTNLVLLELVHLVNSGCNKMI 982

Query: 262 VS*KDRRENSLIESQPGGQDYASRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSVRSLHL 321
           VS*KDRRENSLIESQPG QDYASRPSVKNY RGWRRWEVRIELSEKSFRNFLKSVRSLHL
Sbjct: 983 VS*KDRRENSLIESQPGSQDYASRPSVKNY*RGWRRWEVRIELSEKSFRNFLKSVRSLHL 1162

Query: 322 KTILLRKTWNGCVGLK*LLT 341
           KTILLRKTWNGCVGLK*LLT
Sbjct: 1163KTILLRKTWNGCVGLK*LLT 1222



 Score = 40.8 bits (94), Expect(2) = 0.0
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 1   MGTKEDSTTKPSKTSSSTQ 19
           MGTKEDSTTKPSKTSSSTQ
Sbjct: 208 MGTKEDSTTKPSKTSSSTQ 264


>BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ear cress]
           {Arabidopsis thaliana}, partial (49%)
          Length = 796

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 25/90 (27%), Positives = 37/90 (40%), Gaps = 13/90 (14%)
 Frame = +2

Query: 12  SKTSSSTQTNRKYQHQQYNHHIQIGQPPCRPTIILEPLRLP--IMPQL---------W-- 58
           +KT   T   R++ H   + H+     P RP ++L+  RLP  + P L         W  
Sbjct: 236 TKTRRRTSQRRRFHHPHRHRHL-----PSRPPLLLQLHRLPP*LCPLLRLLRPRYHGWIH 400

Query: 59  LHQPRILICGEASIL*WHHTGLQFRILQCS 88
           LHQP   +        + H  LQF    C+
Sbjct: 401 LHQPNRTLLNSVRFNHFFHFSLQFHYCWCA 490


>TC83004 similar to PIR|T10985|T10985 regulator protein ROM2 - kidney bean,
           partial (78%)
          Length = 1250

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 7/217 (3%)
 Frame = +2

Query: 121 IRIHLKNRRALLQIQAPKQERVERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETR 180
           IR+  KN + L  +Q      + +   V+    +H V   + RV  M AM T +  +E  
Sbjct: 335 IRV**KN*KDLTGLQCQ*AMAMLKVLSVELKTGYHGVW--ILRVPAMEAMATLQGPMEQG 508

Query: 181 REALTSCL--LMEPTRRTILLDPFLNHLFLEILLSRYLQLILILEWTYGMHLLLVLKPPK 238
           +EA       LME  +    +  F   L L     +  Q +L   W     L +      
Sbjct: 509 KEAGMGHQQPLMEKGKLRCQIVKFPKRLLLPKRQCQLSQAVLQKIWLDLYFLQV*PHHWN 688

Query: 239 *DTINL---VLLELVH--LVNSGCNKMIVS*KDRRENSLIESQPGGQDYASRPSVKNYKR 293
           * T++L   VL  LV   L+  GC +M VS*  R  N+ I +        SR  +KN+  
Sbjct: 689 *GTLHLFPPVLHNLVEFCLLKLGC-RMSVS*NVRGGNNQIVNLLEDPGLGSRLRLKNWHE 865

Query: 294 GWRRWEVRIELSEKSFRNFLKSVRSLHLKTILLRKTW 330
              R  +RI    +   N+LK  RS  LK +  RK+W
Sbjct: 866 ESMR*LLRIWR*NQK*MNWLKIRRS*RLKMLH*RKSW 976


>TC76675 SP|P46259|TBA1_PEA Tubulin alpha-1 chain. [Garden pea] {Pisum
            sativum}, partial (98%)
          Length = 1660

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
 Frame = -2

Query: 12   SKTSSSTQTNRKYQHQQYNHHIQIGQPPCRPT----IILEPLRLPIMP 55
            +K S+  ++N  + HQ + HH    QPP  P+     + EPLR  + P
Sbjct: 1488 NKRSNPAKSNNLHLHQHHLHHQTQHQPPHNPSQEQRDLHEPLRTHLFP 1345


>TC77711 similar to PIR|T46160|T46160 caffeic acid O-methyltransferase-like
           protein - Arabidopsis thaliana, partial (86%)
          Length = 2361

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = -2

Query: 24  YQHQQYNHH---IQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASIL*WHHTGL 80
           Y+  Q NHH   +Q  +  C  +  L+      +P    HQ  +L      +  WH    
Sbjct: 767 YR*HQPNHHQ*EVQPNRSSCYGSHHLKLQARMNVPDSLTHQRMVL-----QLRYWHQQSN 603

Query: 81  QFRILQCSLLGISMLILAW**LQVLCTKLQSL 112
           Q +++Q SL+ +S   L W     LCT +Q L
Sbjct: 602 Q*QLVQLSLMTLS*DQLLW---HTLCTPIQML 516


>TC83602 similar to GP|22136892|gb|AAM91790.1 unknown protein {Arabidopsis
           thaliana}, partial (3%)
          Length = 1167

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -2

Query: 7   STTKPSKTSSSTQTNRKYQHQQYNHHIQI------GQPPCRPTIILEPLRLPIMPQLWLH 60
           S +KPS    S     +  ++ Y+HH+          P     I L P+  PI  QL   
Sbjct: 401 SPSKPSPADQSLTQTPRLSYETYSHHLPTQPSLSQAHPS*TARISLPPIAPPIQQQLAPQ 222

Query: 61  QP 62
           QP
Sbjct: 221 QP 216


>TC80878 weakly similar to PIR|A85364|A85364 hypothetical protein AT4g31080
           [imported] - Arabidopsis thaliana, partial (52%)
          Length = 1257

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 23/93 (24%), Positives = 45/93 (47%)
 Frame = +2

Query: 133 QIQAPKQERVERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETRREALTSCLLMEP 192
           Q ++PK++ +ERQ +V   M     + ++    L L + T   +L  R++  T+ +L+  
Sbjct: 701 QTRSPKKQMLERQLKVLVSMLLTAWLEILNW*RLPLRLSTYLKELI*RKKQTTTLVLIH* 880

Query: 193 TRRTILLDPFLNHLFLEILLSRYLQLILILEWT 225
           TR     DP      +E  L   +  +L++ W+
Sbjct: 881 TR-----DP--QKQKMERQLKMLVSALLLIAWS 958


>TC81071 weakly similar to PIR|T52653|T52653 probable sigma-like
           transcription initiation factor [imported] - Arabidopsis
           thaliana (fragment), partial (64%)
          Length = 1856

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +1

Query: 206 LFLEILLSRYLQLILILEWTYGMHLLLVLK 235
           LFL +LL   LQL  +L  + GMHLLL+ K
Sbjct: 406 LFLLLLLLLLLQLCCLLMVSNGMHLLLLSK 495


>TC91297 similar to GP|4337192|gb|AAD18106.1| unknown protein {Arabidopsis
           thaliana}, partial (13%)
          Length = 797

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 23/93 (24%), Positives = 45/93 (47%)
 Frame = +2

Query: 133 QIQAPKQERVERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETRREALTSCLLMEP 192
           Q ++PK++ +ERQ +V   M     + ++    L L + T   +L  R++  T+ +L+  
Sbjct: 311 QTRSPKKQMLERQLKVLVSMLLTAWLEILNW*RLPLRLSTYLKELI*RKKQTTTLVLIH* 490

Query: 193 TRRTILLDPFLNHLFLEILLSRYLQLILILEWT 225
           TR     DP      +E  L   +  +L++ W+
Sbjct: 491 TR-----DP--QKQKMERQLKMLVSALLLIAWS 568


>TC85777 similar to PIR|F86442|F86442 unknown protein [imported] - Arabidopsis
            thaliana, partial (89%)
          Length = 2381

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (43%)
 Frame = +2

Query: 276  QPGGQDYASRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSVRSLHLK 322
            +PGG    S P V NY+R WR W   +E     +      + S+  K
Sbjct: 1004 RPGGFWVLSGPPV-NYERRWRGWNTTVEEQRTDYEKLQDLLTSMCFK 1141


>TC88265 weakly similar to GP|18176104|gb|AAL59984.1 unknown protein
           {Arabidopsis thaliana}, partial (65%)
          Length = 1632

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 38  PPCRPTIILEPLRLPIMP 55
           PP  P + LEP++LPI+P
Sbjct: 126 PPPPPQLFLEPMQLPILP 179


>TC91520 similar to GP|15215816|gb|AAK91453.1 At2g26990/T20P8.4 {Arabidopsis
           thaliana}, partial (40%)
          Length = 780

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 19/56 (33%), Positives = 31/56 (54%)
 Frame = +1

Query: 167 MLAMKTNRNQLETRREALTSCLLMEPTRRTILLDPFLNHLFLEILLSRYLQLILIL 222
           +LAM TN      R E L    +++  RRTI+ DPF+ +   ++L +   Q++L L
Sbjct: 133 ILAM-TNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKL 297


>TC90816 similar to PIR|G84687|G84687 probable disease resistance response
           protein [imported] - Arabidopsis thaliana, partial (47%)
          Length = 1096

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 300 VRIELSEKSFRNFLKSVRSLHLKTILLRKTWNGC 333
           +R+E+ E + RN + ++  + L+ I+++K  N C
Sbjct: 126 IRVEVVEVNVRNNINAISIMDLRGIVVKKVSNAC 25


>TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein Pftf
           precursor {Nicotiana tabacum}, partial (91%)
          Length = 2667

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 197 ILLDPFLNHLFLEI-----LLSRYLQLILILEWTYGMHLLLVLKPPK*DTINLVLLEL 249
           +LL P L H  L +         +L   L+L W +  H+LLV+  P+   I L+L+++
Sbjct: 41  LLLTPTLLHHHLPLHSEVQTFHTFLSHFLLLRWQHHQHVLLVMLYPQ-TVIELLLVKI 211


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.335    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,237,772
Number of Sequences: 36976
Number of extensions: 200658
Number of successful extensions: 1961
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1958
length of query: 341
length of database: 9,014,727
effective HSP length: 97
effective length of query: 244
effective length of database: 5,428,055
effective search space: 1324445420
effective search space used: 1324445420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)