TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148470.10 - phase: 0 /pseudo
         (598 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...   206  3e-53
AL366725                                                               80  3e-15
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO...    45  8e-05
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir...    45  1e-04
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch...    43  4e-04
TC77953 similar to PIR|D84890|D84890 probable AT-hook DNA-bindin...    35  0.11
BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barb...    32  0.69
TC77772 similar to GP|22136300|gb|AAM91228.1 unknown protein {Ar...    32  0.69
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli...    32  0.91
TC83679 weakly similar to PIR|G75403|G75403 DNA topoisomerase I ...    31  1.2
TC81797 similar to GP|17065224|gb|AAL32766.1 Unknown protein {Ar...    30  2.0
TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helica...    30  3.4
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi...    29  4.5
AL385482 similar to GP|5106924|gb|A putative cell wall protein {...    29  5.9
TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene...    29  5.9
TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate deh...    29  5.9
AW585096 similar to GP|11125147|emb MHC class I chain-related pr...    28  7.7

>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score =  206 bits (523), Expect = 3e-53
 Identities = 94/112 (83%), Positives = 104/112 (91%)
 Frame = +2

Query: 1   FLRNHPPTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLP 60
           FLRNHPPTFKGRY PDGA KWLKE+E IFRVMQC E QKV+FGTHMLAEEA+DWW+SLLP
Sbjct: 116 FLRNHPPTFKGRYAPDGA*KWLKEIERIFRVMQCFETQKVQFGTHMLAEEADDWWISLLP 295

Query: 61  ILEQDDAAMTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEF 112
           +LEQDDA +TWA+FR+EFL RY PEDVRG+KEIEFLELKQGDMSVTEYAA+F
Sbjct: 296 VLEQDDAVVTWAMFRKEFLGRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKF 451


>AL366725 
          Length = 485

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 66/145 (45%), Positives = 81/145 (55%)
 Frame = +3

Query: 115 SSSLKMV*ELISSGPLVIKR**IFLIW*AVVGYMKRIPKLITR**VSAVARDSRVVRSRI 174
           +SS +MV*   S G          LI *      +RI +L+TR *+S   R +RV  S I
Sbjct: 48  ASSSRMV*GPTSRGQSDTNSSEFSLI**IPAESTRRILRLMTRL*MSGRPRANRVALSLI 227

Query: 175 VPLRTRVNRG*LMRGGLRGEMLLLRLFVSSVAKKATRVMYVTVMRRSISDVDRNDTH*LI 234
           VPL  R NR   M G LR  MLL RL VS++A+KATRVM+V    R++S V R    *LI
Sbjct: 228 VPLLIRANREWSMIGVLRRRMLLRRLSVSTMARKATRVMFVLKRSRNVSGVTRRVIL*LI 407

Query: 235 ARVGMLFAIIVMKRGILAHSARSLR 259
           A   +L A I  KR IL  +A SLR
Sbjct: 408 ASEMILCASIATKRVILVPNASSLR 482


>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
           {Encephalitozoon cuniculi}, partial (0%)
          Length = 1247

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 22/80 (27%), Positives = 41/80 (50%), Gaps = 2/80 (2%)
 Frame = -2

Query: 7   PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDD 66
           P F+G   PD    WL+ +E +F+  +  E QKV+     L + A+ WW ++    +++ 
Sbjct: 724 PDFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREG 545

Query: 67  AA--MTWAVFRREFLNRYVP 84
            +   TW   R++   +Y+P
Sbjct: 544 KSKIKTWEKMRQKLTRKYLP 485


>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
           (1%)
          Length = 726

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
 Frame = +2

Query: 7   PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSL--LPILEQ 64
           P F G+  PD    WL+ +E +F+  + +E QKV+     L + A+ WW +L      E 
Sbjct: 347 PDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLKRKRNCEG 526

Query: 65  DDAAMTWAVFRREFLNRYV 83
                TW   R++   +Y+
Sbjct: 527 KSKIKTWDKMRQKLTRKYL 583


>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
           partial (7%)
          Length = 2304

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 7   PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDD 66
           P F+G    D    WL+ +E +F   +  E QKV+     L + A  WW +L    +++ 
Sbjct: 629 PDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREG 808

Query: 67  AA--MTWAVFRREFLNRYVP 84
            +   TW   R++   +Y+P
Sbjct: 809 KSKIKTWDKMRQKLTRKYLP 868


>TC77953 similar to PIR|D84890|D84890 probable AT-hook DNA-binding protein
            [imported] - Arabidopsis thaliana, partial (57%)
          Length = 1695

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
 Frame = +2

Query: 250  ILAHSARSLRRFGQVARYLH*LVRRL*I------RTDLSEVLVSLIVLL*LLL*ILVLLI 303
            +L H     R F  + R+ H L+R L +      R D   +LV ++++L*LLL +L+L +
Sbjct: 941  LLLHFMEGSRFFRWLDRFFHHLLRPLLLV*PYI*RADKGRLLVEVLLVL*LLLDLLLLCL 1120

Query: 304  VSLLLIVHISWVW 316
            + L+ ++   ++W
Sbjct: 1121 LLLVTLLMRDFLW 1159


>BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barbinervis},
           partial (17%)
          Length = 585

 Score = 32.0 bits (71), Expect = 0.69
 Identities = 16/35 (45%), Positives = 27/35 (76%)
 Frame = +2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLY 318
           +L+ L++LL LLL +L+LL++ LLL+    ++WLY
Sbjct: 5   LLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWLY 109



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/32 (40%), Positives = 27/32 (83%)
 Frame = +2

Query: 288 LIVLL*LLL*ILVLLIVSLLLIVHISWVWLYL 319
           L++LL LLL +L+LL++ LLL++ + ++++Y+
Sbjct: 5   LLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYM 100



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/35 (40%), Positives = 28/35 (80%)
 Frame = +2

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYL 319
           L+ L++LL LLL +L+LL++ LLL++   +++++L
Sbjct: 2   LLLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWL 106


>TC77772 similar to GP|22136300|gb|AAM91228.1 unknown protein {Arabidopsis
           thaliana}, partial (62%)
          Length = 2554

 Score = 32.0 bits (71), Expect = 0.69
 Identities = 21/59 (35%), Positives = 39/59 (65%), Gaps = 3/59 (5%)
 Frame = +2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEK---WLLKLQLRVQ*LLLL 339
           +L+ LI++L L+L*+++LL++ L  I  + W  L    +++   W L+L +R++ LLLL
Sbjct: 530 MLICLIIILGLIL*LVLLLLICL--IC*LRWNNLIFCRIQRVLIWFLRLCIRLERLLLL 700


>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
           {Arabidopsis thaliana}, partial (89%)
          Length = 1982

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
 Frame = -2

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVH---ISWVWLYLI*MEKWLLKLQLRVQ 334
           L+ L++LL LLL +L++LIV L+LI+H   +  + L LI M   LLK  +RV+
Sbjct: 319 LLLLLLLLILLLILLLILIVLLMLILHHVPLHILLLLLILMMWSLLKPGVRVR 161


>TC83679 weakly similar to PIR|G75403|G75403 DNA topoisomerase I -
           Deinococcus radiodurans (strain R1), partial (3%)
          Length = 596

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/54 (37%), Positives = 34/54 (62%)
 Frame = -2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LL 337
           +LV L + L L+L*+ +LL++ L L++H  W  L+L+    W L L + +Q +L
Sbjct: 301 LLVHLWLWLWLVL*LALLLVLLL*LVLHHQW--LFLLLSRPWRLLLDIFLQRVL 146


>TC81797 similar to GP|17065224|gb|AAL32766.1 Unknown protein {Arabidopsis
           thaliana}, partial (17%)
          Length = 758

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/43 (39%), Positives = 29/43 (66%)
 Frame = -2

Query: 289 IVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQL 331
           +VL+ +++ +L+LL++ LLL+    W+WL+L     WLL L L
Sbjct: 493 LVLMAIMMFLLLLLLLVLLLL----WLWLWL-----WLLLLML 392


>TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helicase
           {Arabidopsis thaliana}, partial (12%)
          Length = 885

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/37 (45%), Positives = 29/37 (77%)
 Frame = -1

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI 320
           +L+ LI+LL LLL +L++LIV L+LI+ +  V L+++
Sbjct: 693 LLLLLILLLILLLILLMMLIVLLMLILILHQVPLHIL 583


>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
           thaliana}, partial (34%)
          Length = 946

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/56 (39%), Positives = 37/56 (65%)
 Frame = +2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLLL 339
           +L ++++LL LLL +L+LL++ LLL++      L L+     LL L+LR++  LLL
Sbjct: 515 LLQAMLLLLRLLLLVLLLLLLVLLLLL------LLLLLRSMLLLHLKLRLRFGLLL 664


>AL385482 similar to GP|5106924|gb|A putative cell wall protein {Medicago
           truncatula}, partial (42%)
          Length = 402

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/32 (43%), Positives = 26/32 (80%)
 Frame = -2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWV 315
           +LV L+V++ LLL +L+L++V LLL+V + ++
Sbjct: 143 LLVLLLVVVLLLLVVLLLVVVLLLLVVELLYL 48


>TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene product
           {Drosophila melanogaster}, partial (5%)
          Length = 711

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/41 (39%), Positives = 32/41 (78%)
 Frame = -3

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEK 324
           +LV L++L+  LL ++VLL+V LLL++H+  + L+L+ +++
Sbjct: 313 LLVGLLLLVV*LL-LVVLLLVGLLLVLHLLQLVLHLLVLDE 194


>TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase 
           chloroplast precursor (EC 1.1.1.95) (3-PGDH). [Mouse-ear
           cress], partial (87%)
          Length = 2474

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/47 (38%), Positives = 33/47 (69%)
 Frame = +3

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQL 331
           +  L++ L +LL*+L+LLI+ LLL + + ++ L+L+   K +L L+L
Sbjct: 597 IYKLLLNLVVLL*MLLLLILLLLLNMGLLFLLLWLVTFLKLMLPLKL 737


>AW585096 similar to GP|11125147|emb MHC class I chain-related protein A
           {Homo sapiens}, partial (5%)
          Length = 231

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +3

Query: 280 DLSEVLVSLIVLL*LLL*ILVLLIVSLLLIVHIS 313
           ++  +L++L++LL LLL  L LLI+ L+L + I+
Sbjct: 111 EIMRLLLNLLLLLLLLLLFLTLLIILLILTIDIT 212


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.370    0.166    0.609 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,883,866
Number of Sequences: 36976
Number of extensions: 296650
Number of successful extensions: 4239
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 2710
Number of HSP's gapped (non-prelim): 1697
length of query: 598
length of database: 9,014,727
effective HSP length: 102
effective length of query: 496
effective length of database: 5,243,175
effective search space: 2600614800
effective search space used: 2600614800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 61 (28.1 bits)