BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148404.4 - phase: 0
(385 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC88572 weakly similar to GP|20145851|emb|CAD29616. auxin respon... 452 e-127
BG646843 similar to GP|20145851|emb auxin response factor 36 {Ar... 248 2e-96
TC89357 similar to GP|20145851|emb|CAD29616. auxin response fact... 276 1e-74
TC81461 256 1e-68
TC79718 248 4e-66
AW573956 similar to GP|20145851|emb auxin response factor 36 {Ar... 234 5e-62
TC81996 similar to GP|20145851|emb|CAD29616. auxin response fact... 229 1e-60
TC76370 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati... 63 2e-10
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati... 62 4e-10
TC93851 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern... 59 3e-09
TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern... 59 3e-09
BI312120 PIR|D84274|D84 coenzyme PQQ synthesis protein [imported... 58 7e-09
CA990321 weakly similar to PIR|S03170|S03 homeotic protein cut -... 55 3e-08
TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern... 51 7e-07
TC85081 similar to GP|21240658|gb|AAM44369.1 putative protein co... 51 7e-07
BF003537 49 2e-06
BF632358 weakly similar to GP|19352296|gb MULTIPLE BANDED ANTIGE... 48 7e-06
BF638658 45 4e-05
AA660213 39 0.003
TC80302 39 0.003
>TC88572 weakly similar to GP|20145851|emb|CAD29616. auxin response factor
36 {Arabidopsis thaliana}, partial (21%)
Length = 1755
Score = 452 bits (1162), Expect = e-127
Identities = 212/268 (79%), Positives = 233/268 (86%)
Frame = +2
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLK KLP NVTLKGPSGVVW++GLT RDDTIY T+GWQ+FVKDHSLK+NDFL
Sbjct: 134 ALPKTFSDNLKNKLPANVTLKGPSGVVWDIGLTTRDDTIYSTDGWQQFVKDHSLKQNDFL 313
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPSNG 134
VFKYNGESLFEVLIFHG+SFCEKAASYF+ + GQAHT Q K K +N SVEEV+TPSNG
Sbjct: 314 VFKYNGESLFEVLIFHGESFCEKAASYFILERGQAHTGQRGRKAKDTNTSVEEVNTPSNG 493
Query: 135 SVECSLPEKSWEEDIYWTHFQFIHFTQLLPEDFKQQLALPKTFSDNLNKKLPENVTLKGP 194
SVEC LPEKSWEEDIYWTHFQFIHFTQ L DF+QQLALPKTFSDNL KKLPENVTLKGP
Sbjct: 494 SVECGLPEKSWEEDIYWTHFQFIHFTQFLRADFEQQLALPKTFSDNLKKKLPENVTLKGP 673
Query: 195 GGVAWKIGLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEK 254
GV W IGL TRDD VYF++GW+RF+ DHSLK NDFLVF YNG+S F+VLIFDG+SFCEK
Sbjct: 674 SGVVWNIGLTTRDDIVYFVDGWKRFIKDHSLKQNDFLVFKYNGKSLFEVLIFDGDSFCEK 853
Query: 255 EASYFVGKCSHTQTELGGSKANETNNSI 282
ASYFVGKC + Q E GG KA +TN S+
Sbjct: 854 AASYFVGKCGNAQIEQGGRKAKDTNKSV 937
Score = 227 bits (578), Expect = 7e-60
Identities = 112/160 (70%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Frame = +2
Query: 143 KSWEEDIYWTHFQFIHFTQLL-PEDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKI 201
+SWEEDIYWTHFQFI FTQ L P +QQLALPKTFSDNL KLP NVTLKGP GV W I
Sbjct: 44 RSWEEDIYWTHFQFIRFTQFLQPTHLEQQLALPKTFSDNLKNKLPANVTLKGPSGVVWDI 223
Query: 202 GLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVG 261
GL TRDDT+Y +GWQ+FV DHSLK NDFLVF YNGES F+VLIF GESFCEK ASYF+
Sbjct: 224 GLTTRDDTIYSTDGWQQFVKDHSLKQNDFLVFKYNGESLFEVLIFHGESFCEKAASYFIL 403
Query: 262 KCSHTQTELGGSKANETNNSIEEVNTASSDGGVECGLYEK 301
+ T G KA +TN S+EEVNT S+G VECGL EK
Sbjct: 404 ERGQAHTGQRGRKAKDTNTSVEEVNT-PSNGSVECGLPEK 520
>BG646843 similar to GP|20145851|emb auxin response factor 36 {Arabidopsis
thaliana}, partial (5%)
Length = 758
Score = 248 bits (633), Expect(2) = 2e-96
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +3
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL
Sbjct: 228 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 407
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPS 132
VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPS
Sbjct: 408 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPS 581
Score = 228 bits (581), Expect = 3e-60
Identities = 107/149 (71%), Positives = 119/149 (79%), Gaps = 2/149 (1%)
Frame = +3
Query: 143 KSWEEDIYWTHFQFIHFTQLLPE--DFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWK 200
KSWE++IYWTHFQFIHF Q L DF+QQLALPKTFSDNL KKLP NVTLKGP GV W
Sbjct: 135 KSWEKEIYWTHFQFIHFIQFLQTTTDFQQQLALPKTFSDNLKKKLPGNVTLKGPSGVVWN 314
Query: 201 IGLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFV 260
+GL RDDT+YF NGWQRFV DHSLK+NDFLVF YNGES F+VLIF G+SFCEK ASYFV
Sbjct: 315 VGLTARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFHGDSFCEKAASYFV 494
Query: 261 GKCSHTQTELGGSKANETNNSIEEVNTAS 289
GKC TE +K +NNS+EEV+T S
Sbjct: 495 GKCGQAHTEQVCNKGKSSNNSVEEVSTPS 581
Score = 122 bits (307), Expect(2) = 2e-96
Identities = 56/58 (96%), Positives = 57/58 (97%)
Frame = +2
Query: 134 GSVECSLPEKSWEEDIYWTHFQFIHFTQLLPEDFKQQLALPKTFSDNLNKKLPENVTL 191
GSVECSLPEKSWEEDIYWTHFQFIHFTQLLP DFKQQLALPKTFSD+LNKKLPENVTL
Sbjct: 584 GSVECSLPEKSWEEDIYWTHFQFIHFTQLLPRDFKQQLALPKTFSDHLNKKLPENVTL 757
Score = 37.0 bits (84), Expect = 0.013
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 15 ALPKTFSDNLKKKLPGNVTL 34
ALPKTFSD+L KKLP NVTL
Sbjct: 698 ALPKTFSDHLNKKLPENVTL 757
>TC89357 similar to GP|20145851|emb|CAD29616. auxin response factor 36
{Arabidopsis thaliana}, partial (21%)
Length = 843
Score = 276 bits (705), Expect = 1e-74
Identities = 146/225 (64%), Positives = 166/225 (72%), Gaps = 10/225 (4%)
Frame = +3
Query: 143 KSWEEDIYWTHFQFIHFTQLL-PEDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKI 201
+SWEEDIYWTHFQFIHFTQ L DF QQLALPKTFS+N+ KKLPENV LKGPGGV W I
Sbjct: 174 RSWEEDIYWTHFQFIHFTQFLRSNDFDQQLALPKTFSNNVKKKLPENVVLKGPGGVTWNI 353
Query: 202 GLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVG 261
GL +RD T YF GW++FV DHSLK+NDFL F YNGES F+VLIFDG+SFCEK A+YFV
Sbjct: 354 GLTSRDGTFYFTQGWEQFVKDHSLKENDFLFFKYNGESLFEVLIFDGKSFCEKAAAYFVR 533
Query: 262 KCSH----TQTELGG---SKANETNNSIEEVNTASSDGGVECGL-YEKFQDLNNIGTPLA 313
KC H QTE GG SK ETNNS++EVNT S+ GV+ G+ +EK LN+I P A
Sbjct: 534 KCGHAEAAAQTEQGGGCSSKGRETNNSVDEVNTPSN--GVDEGVSHEKSLHLNSIRVPFA 707
Query: 314 VPVETTNEKTFNAGVESDSPELLIAD-TVTKTTAIQFPYQPTGKR 357
VP ETTN KT NA VES +PE L++D VT T P Q TGKR
Sbjct: 708 VPSETTNGKTSNAAVESATPEQLMSDAAVTXTEPTAVPXQTTGKR 842
Score = 190 bits (483), Expect = 7e-49
Identities = 96/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +3
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFS+N+KKKLP NV LKGP GV WN+GLT+RD T YFT GW++FVKDHSLKENDFL
Sbjct: 264 ALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFL 443
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQ----AHTEQ---VCNKGKSSNNSVEE 127
FKYNGESLFEVLIF G SFCEKAA+YFV KCG A TEQ +KG+ +NNSV+E
Sbjct: 444 FFKYNGESLFEVLIFDGKSFCEKAAAYFVRKCGHAEAAAQTEQGGGCSSKGRETNNSVDE 623
Query: 128 VSTPSNGSVECSLPEKS 144
V+TPSNG E EKS
Sbjct: 624 VNTPSNGVDEGVSHEKS 674
>TC81461
Length = 745
Score = 256 bits (653), Expect = 1e-68
Identities = 133/220 (60%), Positives = 146/220 (65%), Gaps = 2/220 (0%)
Frame = +1
Query: 143 KSWEEDIYWTHFQFIHFTQLLPE--DFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWK 200
KSWEE+IYW HFQFIHFT L +F+QQ ALPKTFSDNL KKLPENVTLKGP GV W
Sbjct: 142 KSWEEEIYWNHFQFIHFTLFLHSTTNFQQQPALPKTFSDNLKKKLPENVTLKGPSGVVWN 321
Query: 201 IGLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFV 260
IGL T DDTVYF NGWQ+FVNDHSLK++DFL F YNGES F+VLIFDG SFCEK ASYFV
Sbjct: 322 IGLTTIDDTVYFTNGWQQFVNDHSLKESDFLFFKYNGESLFEVLIFDGRSFCEKAASYFV 501
Query: 261 GKCSHTQTELGGSKANETNNSIEEVNTASSDGGVECGLYEKFQDLNNIGTPLAVPVETTN 320
GKC H QTE GG KA +TN S+EE++TA G
Sbjct: 502 GKCGHAQTEQGGIKAKDTNKSVEEIDTAFDAG---------------------------- 597
Query: 321 EKTFNAGVESDSPELLIADTVTKTTAIQFPYQPTGKRSKR 360
VES SPE L+AD VTKTT + P Q GKR KR
Sbjct: 598 -------VESASPEQLMADAVTKTTPVAAPSQSIGKRIKR 696
Score = 203 bits (517), Expect = 8e-53
Identities = 98/129 (75%), Positives = 107/129 (81%)
Frame = +1
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLKKKLP NVTLKGPSGVVWN+GLT DDT+YFTNGWQ+FV DHSLKE+DFL
Sbjct: 235 ALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTIDDTVYFTNGWQQFVNDHSLKESDFL 414
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPSNG 134
FKYNGESLFEVLIF G SFCEKAASYFVGKCG A TEQ K K +N SVEE+ T +
Sbjct: 415 FFKYNGESLFEVLIFDGRSFCEKAASYFVGKCGHAQTEQGGIKAKDTNKSVEEIDTAFDA 594
Query: 135 SVECSLPEK 143
VE + PE+
Sbjct: 595 GVESASPEQ 621
>TC79718
Length = 1377
Score = 248 bits (632), Expect = 4e-66
Identities = 136/244 (55%), Positives = 159/244 (64%), Gaps = 2/244 (0%)
Frame = +2
Query: 143 KSWEEDIYWTHFQFIHFTQLLPE--DFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWK 200
+SWEEDIYWTHFQFIHFTQ L +F+QQLALPKTFSDNL KKLPENVTLKGP GV W
Sbjct: 95 RSWEEDIYWTHFQFIHFTQFLQTTTNFQQQLALPKTFSDNLKKKLPENVTLKGPSGVVWN 274
Query: 201 IGLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFV 260
IGL TRD+TVYF++GWQ+FVNDHSLK+NDFLVF YNGES F+VLIFDG SFCEK SYFV
Sbjct: 275 IGLTTRDNTVYFVDGWQQFVNDHSLKENDFLVFKYNGESLFEVLIFDGNSFCEKATSYFV 454
Query: 261 GKCSHTQTELGGSKANETNNSIEEVNTASSDGGVECGLYEKFQDLNNIGTPLAVPVETTN 320
GKC H QTE G SKA + NT++ + GVE + D+ TP AVP +TT+
Sbjct: 455 GKCGHAQTEQGDSKAKDN-------NTSAFNAGVE-SASPQVADVVAKTTPAAVPSQTTS 610
Query: 321 EKTFNAGVESDSPELLIADTVTKTTAIQFPYQPTGKRSKRRRSSTSANCCWRALDRVAYN 380
++T K I+ T KR + +S S R D VA N
Sbjct: 611 KRT------------------KKKPVIEVTPVQTKKRGRPPKSDDSGEKLLR--DLVACN 730
Query: 381 KQHS 384
K+HS
Sbjct: 731 KEHS 742
Score = 191 bits (486), Expect = 3e-49
Identities = 93/128 (72%), Positives = 103/128 (79%)
Frame = +2
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLKKKLP NVTLKGPSGVVWN+GLT RD+T+YF +GWQ+FV DHSLKENDFL
Sbjct: 188 ALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTRDNTVYFVDGWQQFVNDHSLKENDFL 367
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPSNG 134
VFKYNGESLFEVLIF G+SFCEKA SYFVGKCG A TEQ +K K +N S N
Sbjct: 368 VFKYNGESLFEVLIFDGNSFCEKATSYFVGKCGHAQTEQGDSKAKDNNTSA------FNA 529
Query: 135 SVECSLPE 142
VE + P+
Sbjct: 530 GVESASPQ 553
>AW573956 similar to GP|20145851|emb auxin response factor 36 {Arabidopsis
thaliana}, partial (15%)
Length = 555
Score = 234 bits (596), Expect = 5e-62
Identities = 109/146 (74%), Positives = 120/146 (81%), Gaps = 1/146 (0%)
Frame = +2
Query: 143 KSWEEDIYWTHFQFIHFTQLLPE-DFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKI 201
+SWEEDIYW +FQFIHFTQ L DF+QQLALPKTFSDNL KKLPENVTLKGP G W I
Sbjct: 116 RSWEEDIYWNNFQFIHFTQFLQTTDFQQQLALPKTFSDNLKKKLPENVTLKGPSGAVWDI 295
Query: 202 GLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVG 261
GL TRD+TVYF+ GW+RFV DHSLK+NDFLVF YNGES F+VLIFDG++FCEK SYFV
Sbjct: 296 GLTTRDNTVYFVGGWERFVKDHSLKENDFLVFKYNGESLFEVLIFDGDNFCEKATSYFVR 475
Query: 262 KCSHTQTELGGSKANETNNSIEEVNT 287
KC H QTE GGSK TN S+ EVNT
Sbjct: 476 KCGHAQTEEGGSKVKNTNTSVGEVNT 553
Score = 191 bits (485), Expect = 4e-49
Identities = 90/116 (77%), Positives = 101/116 (86%)
Frame = +2
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLKKKLP NVTLKGPSG VW++GLT RD+T+YF GW+RFVKDHSLKENDFL
Sbjct: 206 ALPKTFSDNLKKKLPENVTLKGPSGAVWDIGLTTRDNTVYFVGGWERFVKDHSLKENDFL 385
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVST 130
VFKYNGESLFEVLIF GD+FCEKA SYFV KCG A TE+ +K K++N SV EV+T
Sbjct: 386 VFKYNGESLFEVLIFDGDNFCEKATSYFVRKCGHAQTEEGGSKVKNTNTSVGEVNT 553
>TC81996 similar to GP|20145851|emb|CAD29616. auxin response factor 36
{Arabidopsis thaliana}, partial (15%)
Length = 700
Score = 229 bits (585), Expect = 1e-60
Identities = 125/228 (54%), Positives = 141/228 (61%), Gaps = 1/228 (0%)
Frame = +3
Query: 143 KSWEEDIYWTHFQFIHFTQLLPE-DFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKI 201
+SWEEDIYW HFQFIHFT L DF+QQLALPKTFSDNL KLPENVTLKGP GV W I
Sbjct: 54 RSWEEDIYWNHFQFIHFTLFLSTFDFQQQLALPKTFSDNLKNKLPENVTLKGPSGVVWNI 233
Query: 202 GLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVG 261
GL TRD TVYF +GWQRFV DHSLK+NDFLVF YNGES F+VLIFD ++FCEK SYFVG
Sbjct: 234 GLTTRDYTVYFTDGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFDRDNFCEKATSYFVG 413
Query: 262 KCSHTQTELGGSKANETNNSIEEVNTASSDGGVECGLYEKFQDLNNIGTPLAVPVETTNE 321
KC H QTE GSKA NN NT++ + GVE
Sbjct: 414 KCGHAQTEQEGSKAK--NN-----NTSAFNTGVE-------------------------- 494
Query: 322 KTFNAGVESDSPELLIADTVTKTTAIQFPYQPTGKRSKRRRSSTSANC 369
S SPE ++AD VTKTT + P Q ++ + S C
Sbjct: 495 --------SASPEQIMADAVTKTTPVAVPSQKNQQKDQEEACY*SYTC 614
Score = 192 bits (489), Expect = 1e-49
Identities = 95/129 (73%), Positives = 104/129 (79%)
Frame = +3
Query: 15 ALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFL 74
ALPKTFSDNLK KLP NVTLKGPSGVVWN+GLT RD T+YFT+GWQRFVKDHSLKENDFL
Sbjct: 144 ALPKTFSDNLKNKLPENVTLKGPSGVVWNIGLTTRDYTVYFTDGWQRFVKDHSLKENDFL 323
Query: 75 VFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPSNG 134
VFKYNGESLFEVLIF D+FCEKA SYFVGKCG A TEQ +K K++N S N
Sbjct: 324 VFKYNGESLFEVLIFDRDNFCEKATSYFVGKCGHAQTEQEGSKAKNNNTSA------FNT 485
Query: 135 SVECSLPEK 143
VE + PE+
Sbjct: 486 GVESASPEQ 512
>TC76370 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
1 {Arabidopsis thaliana}, partial (36%)
Length = 1840
Score = 62.8 bits (151), Expect = 2e-10
Identities = 32/87 (36%), Positives = 49/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 162 LLPEDFK-QQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFV 220
+LP + +QL +P F +L TL P G W++GL D+ ++F++GWQ FV
Sbjct: 157 ILPSSLQTRQLRIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFV 336
Query: 221 NDHSLKDNDFLVFNYNGESHFDVLIFD 247
+++ FLVF Y G S+F V IF+
Sbjct: 337 QRYAIGIGYFLVFTYEGNSNFIVHIFN 417
Score = 57.4 bits (137), Expect = 9e-09
Identities = 30/75 (40%), Positives = 41/75 (54%)
Frame = +1
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 75
+P F +L TL P G VW +GL D+ I+F +GWQ FV+ +++ FLV
Sbjct: 193 IPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYAIGIGYFLV 372
Query: 76 FKYNGESLFEVLIFH 90
F Y G S F V IF+
Sbjct: 373 FTYEGNSNFIVHIFN 417
Score = 31.6 bits (70), Expect = 0.54
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 75
LP F++ + G + L+ G W V + + GW F +++L E D V
Sbjct: 1072 LPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNLGEGDICV 1251
Query: 76 FKY--NGESLFEVLIF 89
F+ E + +V +F
Sbjct: 1252 FELLRTREVVLQVTLF 1299
>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
1 {Arabidopsis thaliana}, partial (37%)
Length = 1760
Score = 62.0 bits (149), Expect = 4e-10
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +2
Query: 169 QQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFVNDHSLKDN 228
+QL LP F + VTL P G W++ + D+ +FL+GW FV ++S+
Sbjct: 257 KQLRLPDDFMRKYGGDISPTVTLTVPDGSVWRVIMKKVDNKFWFLDGWNEFVQNYSISTG 436
Query: 229 DFLVFNYNGESHFDVLIF 246
LVF Y G+SHF V IF
Sbjct: 437 YLLVFKYEGKSHFTVNIF 490
Score = 57.4 bits (137), Expect = 9e-09
Identities = 32/81 (39%), Positives = 44/81 (53%), Gaps = 4/81 (4%)
Frame = +2
Query: 13 LQALPKTFSDNLKKKLPGN----VTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSL 68
LQA D+ +K G+ VTL P G VW V + D+ +F +GW FV+++S+
Sbjct: 248 LQAKQLRLPDDFMRKYGGDISPTVTLTVPDGSVWRVIMKKVDNKFWFLDGWNEFVQNYSI 427
Query: 69 KENDFLVFKYNGESLFEVLIF 89
LVFKY G+S F V IF
Sbjct: 428 STGYLLVFKYEGKSHFTVNIF 490
Score = 31.2 bits (69), Expect = 0.70
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 75
LP F++ + G + L+ G W V R + GW F +++L E D V
Sbjct: 1139 LPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCV 1318
Query: 76 FKY--NGESLFEVLIF 89
F+ E + +V +F
Sbjct: 1319 FELVATKEVVLQVTVF 1366
>TC93851 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
response 1 {Arabidopsis thaliana}, partial (9%)
Length = 710
Score = 58.9 bits (141), Expect = 3e-09
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Frame = +1
Query: 157 IHFTQ-LLPED-FKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLN 214
IHF + +LP + +++ +P+ F +L T+ P G W++ L + VYF N
Sbjct: 223 IHFKKAILPSPIYDKEIRIPENFITMFGNELENVATVTVPDGCDWEMDLKKCGEDVYFCN 402
Query: 215 G-WQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGES 250
WQ+F +SL+ FL F Y G S+F V+IFD S
Sbjct: 403 KEWQQFAEYYSLRYGCFLSFRYEGNSNFSVIIFDATS 513
Score = 50.8 bits (120), Expect = 9e-07
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNG-WQRFVKDHSLKENDFL 74
+P+ F +L T+ P G W + L + +YF N WQ+F + +SL+ FL
Sbjct: 277 IPENFITMFGNELENVATVTVPDGCDWEMDLKKCGEDVYFCNKEWQQFAEYYSLRYGCFL 456
Query: 75 VFKYNGESLFEVLIFHGDS 93
F+Y G S F V+IF S
Sbjct: 457 SFRYEGNSNFSVIIFDATS 513
>TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
response 1 {Arabidopsis thaliana}, partial (26%)
Length = 695
Score = 58.9 bits (141), Expect = 3e-09
Identities = 30/78 (38%), Positives = 44/78 (55%)
Frame = +1
Query: 169 QQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFVNDHSLKDN 228
+QL +P F +L TL PGG W++GL D+++ F++GWQ FV +S+
Sbjct: 142 KQLRIPDNFLRKHGDQLSTVATLTIPGGSVWRLGLKKVDNSICFVDGWQDFVQRYSIGIG 321
Query: 229 DFLVFNYNGESHFDVLIF 246
LVF Y G S+F + IF
Sbjct: 322 YLLVFIYEGRSNFIIHIF 375
Score = 52.0 bits (123), Expect = 4e-07
Identities = 29/74 (39%), Positives = 39/74 (52%)
Frame = +1
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 75
+P F +L TL P G VW +GL D++I F +GWQ FV+ +S+ LV
Sbjct: 154 IPDNFLRKHGDQLSTVATLTIPGGSVWRLGLKKVDNSICFVDGWQDFVQRYSIGIGYLLV 333
Query: 76 FKYNGESLFEVLIF 89
F Y G S F + IF
Sbjct: 334 FIYEGRSNFIIHIF 375
>BI312120 PIR|D84274|D84 coenzyme PQQ synthesis protein [imported] -
Halobacterium sp. NRC-1, partial (3%)
Length = 550
Score = 57.8 bits (138), Expect = 7e-09
Identities = 43/108 (39%), Positives = 47/108 (42%), Gaps = 2/108 (1%)
Frame = +1
Query: 278 TNNSIEEVNTASSDGGVECGLYEKFQDLNNIGTPLAVPVETTNEKTFNAGVESDSPELLI 337
TNNSIEEV+T S+ G DSPE
Sbjct: 1 TNNSIEEVDTDSNGG--------------------------------------DSPEQFT 66
Query: 338 ADTVTKTTAIQFPYQPTGKRSKRRRSSTSANCCW--RALDRVAYNKQH 383
D V KTTAIQ P+ PTGKR+KRRR S A W RA V NKQH
Sbjct: 67 DDAVPKTTAIQSPFIPTGKRTKRRRRSPKAAANWGARAHAWVTCNKQH 210
>CA990321 weakly similar to PIR|S03170|S03 homeotic protein cut - fruit fly
(Drosophila melanogaster), partial (2%)
Length = 451
Score = 55.5 bits (132), Expect = 3e-08
Identities = 30/94 (31%), Positives = 48/94 (50%)
Frame = +3
Query: 25 KKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLF 84
K+K+ + L+ G W+V D +YF GW++F +++SL+E+DFLVF + ++F
Sbjct: 105 KRKVIKDFILRDRRGRDWHVKARLIGDELYFDGGWKQFREENSLEEDDFLVFTHIENTVF 284
Query: 85 EVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKG 118
I S CEK V + E+ N G
Sbjct: 285 RFKILELSSMCEKKKVSVVEENNNMEDEEEVNDG 386
Score = 49.7 bits (117), Expect = 2e-06
Identities = 33/129 (25%), Positives = 61/129 (46%), Gaps = 2/129 (1%)
Frame = +3
Query: 165 EDFKQQLALPKTFSDNLN--KKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFVND 222
E +++ +P F + + +K+ ++ L+ G W + D +YF GW++F +
Sbjct: 48 EKHTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKARLIGDELYFDGGWKQFREE 227
Query: 223 HSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVGKCSHTQTELGGSKANETNNSI 282
+SL+++DFLVF + + F I + S CEK+ V + ++ + E
Sbjct: 228 NSLEEDDFLVFTHIENTVFRFKILELSSMCEKKKVSVVEENNNMEDE------------- 368
Query: 283 EEVNTASSD 291
EEVN D
Sbjct: 369 EEVNDGDDD 395
>TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
response 1 {Arabidopsis thaliana}, partial (6%)
Length = 910
Score = 51.2 bits (121), Expect = 7e-07
Identities = 32/99 (32%), Positives = 47/99 (47%)
Frame = +3
Query: 169 QQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFVNDHSLKDN 228
+QL +P F +L TL P G W + L D+ + F++GWQ FV +S+
Sbjct: 156 KQLRIPDNFLRKHGAQLSTITTLTVPDGTVWHLRLKKVDNQICFVDGWQDFVQRYSIGIG 335
Query: 229 DFLVFNYNGESHFDVLIFDGESFCEKEASYFVGKCSHTQ 267
FLVF G +F V +F + E +Y SHT+
Sbjct: 336 *FLVFTCEGNLNFIVHMF---NISTAELNYQSAMRSHTE 443
Score = 46.6 bits (109), Expect = 2e-05
Identities = 32/101 (31%), Positives = 46/101 (44%)
Frame = +3
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 75
+P F +L TL P G VW++ L D+ I F +GWQ FV+ +S+ FLV
Sbjct: 168 IPDNFLRKHGAQLSTITTLTVPDGTVWHLRLKKVDNQICFVDGWQDFVQRYSIGIG*FLV 347
Query: 76 FKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCN 116
F G F V +F+ A ++HTE C+
Sbjct: 348 FTCEGNLNFIVHMFN-----ISTAELNYQSAMRSHTEGPCH 455
>TC85081 similar to GP|21240658|gb|AAM44369.1 putative protein contains
similarity to topoisomerase-related function protein,
partial (1%)
Length = 823
Score = 51.2 bits (121), Expect = 7e-07
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +3
Query: 31 NVTLKGPSGVVWNVGLTARDDTIYFTN-GWQRFVKDHSLKENDFLVFKYNGESLFEVLIF 89
++ L SG W V + + + IY N GWQ+F+KD+S+ +FLVF Y GE+LF V I+
Sbjct: 219 SIILVCSSGEKWEVKILKKANDIYVRNFGWQKFLKDNSVGLEEFLVFTYIGENLFNVEIY 398
Score = 47.0 bits (110), Expect = 1e-05
Identities = 24/68 (35%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Frame = +3
Query: 188 NVTLKGPGGVAWKIGLITRDDTVYFLN-GWQRFVNDHSLKDNDFLVFNYNGESHFDVLIF 246
++ L G W++ ++ + + +Y N GWQ+F+ D+S+ +FLVF Y GE+ F+V I+
Sbjct: 219 SIILVCSSGEKWEVKILKKANDIYVRNFGWQKFLKDNSVGLEEFLVFTYIGENLFNVEIY 398
Query: 247 DGESFCEK 254
G++ EK
Sbjct: 399 -GKNGLEK 419
>BF003537
Length = 397
Score = 49.3 bits (116), Expect = 2e-06
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 158 HFTQLL-PEDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGW 216
HF L P Q L +P F + V+L GP G W++ L+ +D+ ++F +GW
Sbjct: 186 HFYHLFNPSSTSQSLRVPDGFVHQMEGATCGLVSLTGPSGNTWQVRLVEQDNHLFFHHGW 365
Query: 217 QRFVNDHSLK 226
FV DH L+
Sbjct: 366 STFVGDHHLQ 395
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/54 (38%), Positives = 31/54 (56%)
Frame = +3
Query: 16 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLK 69
+P F ++ G V+L GPSG W V L +D+ ++F +GW FV DH L+
Sbjct: 234 VPDGFVHQMEGATCGLVSLTGPSGNTWQVRLVEQDNHLFFHHGWSTFVGDHHLQ 395
>BF632358 weakly similar to GP|19352296|gb MULTIPLE BANDED ANTIGEN
(FRAGMENT). 6/101 {Dictyostelium discoideum}, partial
(3%)
Length = 578
Score = 47.8 bits (112), Expect = 7e-06
Identities = 22/56 (39%), Positives = 32/56 (56%)
Frame = +2
Query: 42 WNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFHGDSFCEK 97
W V D YF +GW++F +++ L ENDFLVF + ++F+ I S CEK
Sbjct: 221 WYVKARRIGDEFYFDDGWKKFRQENCLVENDFLVFTHIENNVFKFKILELSSMCEK 388
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 159 FTQLLPEDFKQQLALPKTFSDNLNKK--LPENVTLKGPGGVAWKIGLITRDDTVYFLNGW 216
F L E +++ +P F + ++ K + ++ L+ W + D YF +GW
Sbjct: 95 FKVFLKEKHSERMLIPNAFMNLVHSKRRVIKDFILRDRRRRDWYVKARRIGDEFYFDDGW 274
Query: 217 QRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEK 254
++F ++ L +NDFLVF + + F I + S CEK
Sbjct: 275 KKFRQENCLVENDFLVFTHIENNVFKFKILELSSMCEK 388
>BF638658
Length = 185
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 143 KSWEEDIYWTHFQFIHFTQ 161
+SWEEDIYWTHFQ IHFTQ
Sbjct: 126 RSWEEDIYWTHFQXIHFTQ 182
>AA660213
Length = 250
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/65 (38%), Positives = 28/65 (42%), Gaps = 4/65 (6%)
Frame = +2
Query: 142 EKSWEEDIYWTHFQFIHFTQLLPEDFKQQLALPKTFSDNLNKKLPENVT----LKGPGGV 197
E WEEDI WTH FIH T L S N+ ++ E V KG GV
Sbjct: 47 EAIWEEDI*WTHLPFIHCTXLXQTTTXFN---NNXHS*NIFRQFKEEVARKCDXKGXSGV 217
Query: 198 AWKIG 202
W IG
Sbjct: 218 VWNIG 232
Score = 38.5 bits (88), Expect = 0.004
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 174 PKTFSDNLNKKLPENVTLK 192
PKTFSDNL KKLPENVT K
Sbjct: 147 PKTFSDNLKKKLPENVTXK 203
Score = 37.7 bits (86), Expect = 0.008
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 17 PKTFSDNLKKKLPGNVTLK 35
PKTFSDNLKKKLP NVT K
Sbjct: 147 PKTFSDNLKKKLPENVTXK 203
>TC80302
Length = 886
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/82 (36%), Positives = 37/82 (44%), Gaps = 13/82 (15%)
Frame = +3
Query: 316 VETTNEKTFNAGVESDSPELLIADTVTKTTAIQFPYQPTGKRSK-------------RRR 362
V+TT++ T NA ES SP K + FP QPTG+R+K R R
Sbjct: 9 VKTTDKMTLNAFFESASP---------KELPVYFPKQPTGQRTKKPANEVTPGQTKKRGR 161
Query: 363 SSTSANCCWRALDRVAYNKQHS 384
N ALD A NK+HS
Sbjct: 162 PPKEGNSREGALDLRASNKEHS 227
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,360,092
Number of Sequences: 36976
Number of extensions: 196433
Number of successful extensions: 1117
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of query: 385
length of database: 9,014,727
effective HSP length: 98
effective length of query: 287
effective length of database: 5,391,079
effective search space: 1547239673
effective search space used: 1547239673
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC148404.4