BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.5 - phase: 0
(130 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644741 42 5e-05
AL366605 36 0.004
BG580885 31 0.12
TC81331 similar to PIR|H96788|H96788 protein T4O12.26 [imported]... 29 0.60
BG647389 27 2.3
TC79202 similar to PIR|T01970|T01970 probable wound-induced prot... 27 3.0
TC82238 weakly similar to GP|8570046|dbj|BAA96751.1 Similar to A... 27 3.0
TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 26 3.9
TC87841 similar to PIR|C86334|C86334 hypothetical protein AAF799... 26 5.0
TC83511 similar to GP|18252961|gb|AAL62407.1 unknown protein {Ar... 25 6.6
TC90098 weakly similar to GP|9758140|dbj|BAB08632.1 disease resi... 25 6.6
TC79755 weakly similar to PIR|T04972|T04972 hypothetical protein... 25 6.6
>BG644741
Length = 735
Score = 42.4 bits (98), Expect = 5e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -2
Query: 81 LHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLARSSP 120
L +FP L A WF LP SI W+QLR FLAR P
Sbjct: 587 LRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYP 468
>AL366605
Length = 422
Score = 36.2 bits (82), Expect = 0.004
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -3
Query: 38 LLNIVQQNQFFELPTED-------PNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRD 90
L++ V + F++P D P HI ++R G K N +++ +H F L +
Sbjct: 363 LVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDN----DSLMIHCFQDSLME 196
Query: 91 RASAWFHSLPNGSITPWDQLRQAF 114
A+ W+ SL I +D+L AF
Sbjct: 195 DAAEWYTSLSKNDIHTFDELAAAF 124
>BG580885
Length = 609
Score = 31.2 bits (69), Expect = 0.12
Identities = 16/67 (23%), Positives = 34/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 51 PTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWF--HSLPNGSITPWD 108
P E P H+S F ++ ++N + ++ +FP L + ++ W+ + P WD
Sbjct: 66 PNESPITHLSRFNKVC---RANNASSVEMQKKIFPVTLEEESALWYDLNIEPYYISLSWD 236
Query: 109 QLRQAFL 115
+++ +FL
Sbjct: 237 EIKLSFL 257
>TC81331 similar to PIR|H96788|H96788 protein T4O12.26 [imported] -
Arabidopsis thaliana, partial (69%)
Length = 696
Score = 28.9 bits (63), Expect = 0.60
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 68 TLKSNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQL 110
T + TI L+LFP LLR ++ HSL + P D L
Sbjct: 502 TATATATATATILLNLFPLLLRKLINSVIHSLTSTDKQPSDNL 374
>BG647389
Length = 718
Score = 26.9 bits (58), Expect = 2.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 87 LLRDRASAWFHSLPNGSITPWDQLRQAFLARSSPKQNCSV 126
+L++ W+ +LP SIT + + + + S ++C V
Sbjct: 445 ILKEATQQWYMNLPRFSITGYQNMTHKLVHQFSASKHCKV 564
>TC79202 similar to PIR|T01970|T01970 probable wound-induced protein T9A4.6
- Arabidopsis thaliana, partial (83%)
Length = 773
Score = 26.6 bits (57), Expect = 3.0
Identities = 12/35 (34%), Positives = 20/35 (56%)
Frame = -1
Query: 51 PTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFP 85
P +HISTF + TL+S+ + P + L+ +P
Sbjct: 671 PNYKDQIHISTFSFIFLTLQSSPLPPNSTNLYKYP 567
>TC82238 weakly similar to GP|8570046|dbj|BAA96751.1 Similar to Arabidopsis
thaliana chromosome4 BAC clone T16H5; lectin like
protein (AL024486), partial (24%)
Length = 819
Score = 26.6 bits (57), Expect = 3.0
Identities = 19/91 (20%), Positives = 34/91 (36%)
Frame = +3
Query: 5 HTLKEYATPSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLR 64
H K+Y + ++Y + + P +QQ E TE L +L
Sbjct: 381 HKTKKYWVEKNSKANCFMLYARALSITWAEDPNYWKWIQQKDVSEGTTEVAELKRVCWLE 560
Query: 65 LSGTLKSNGVTPETIRLHLFPFLLRDRASAW 95
+ G + ++P + F +L+D A W
Sbjct: 561 VHGKFDTRKLSPGILYQVSFIIMLKDPAQGW 653
>TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 695
Score = 26.2 bits (56), Expect = 3.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 59 ISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPW 107
+ST L L+ KSNG T+R FL + + F S G + PW
Sbjct: 247 LSTLLVLTDLTKSNGSRAVTVR-----FLYSTCSRSRFPSSLGGELLPW 116
>TC87841 similar to PIR|C86334|C86334 hypothetical protein AAF79906.1
[imported] - Arabidopsis thaliana, partial (18%)
Length = 1126
Score = 25.8 bits (55), Expect = 5.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +2
Query: 12 TPSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKS 71
TP + + Y + + NFD LLN+ QQ Q P P H+S L + L
Sbjct: 290 TPKKNKRGSNCNYISNPSQNFDTYAGLLNLPQQKQ----PPLLPLPHVSAILHHNKPLLP 457
Query: 72 NGVTPETIRL 81
+ +++ L
Sbjct: 458 RNLNTQSLSL 487
>TC83511 similar to GP|18252961|gb|AAL62407.1 unknown protein {Arabidopsis
thaliana}, complete
Length = 1014
Score = 25.4 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 74 VTPETIRLHLFPFLLRDRASAWFHSLPNGSITP 106
V+ ++L LFP + A F S PN S+TP
Sbjct: 65 VSMGVVQLDLFPTETSLKKIACFLSFPNSSVTP 163
>TC90098 weakly similar to GP|9758140|dbj|BAB08632.1 disease resistance
protein-like {Arabidopsis thaliana}, partial (16%)
Length = 1128
Score = 25.4 bits (54), Expect = 6.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 49 ELPTEDPNLHISTFLRLSGTLKSNGVTPETI 79
ELP NLH+ FL +SG + S PE I
Sbjct: 706 ELPNSIRNLHVLKFLNISGCI-SLSQLPENI 795
>TC79755 weakly similar to PIR|T04972|T04972 hypothetical protein T16L1.40 -
Arabidopsis thaliana, partial (33%)
Length = 707
Score = 25.4 bits (54), Expect = 6.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 83 LFPFLLRDRASAWFHSLPNGSITPW 107
LF F + AS W NG TPW
Sbjct: 287 LFSFFSDEFASTWDIKASNGCTTPW 213
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,047,061
Number of Sequences: 36976
Number of extensions: 52877
Number of successful extensions: 275
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of query: 130
length of database: 9,014,727
effective HSP length: 85
effective length of query: 45
effective length of database: 5,871,767
effective search space: 264229515
effective search space used: 264229515
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148395.5