BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148360.15 - phase: 0
(422 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG448416 similar to GP|13509833|em unnamed protein product {Zea ... 44 1e-04
TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - ... 42 3e-04
TC88458 homologue to GP|16323143|gb|AAL15306.1 At1g32540/T9G5_1 ... 37 0.011
TC84256 34 0.093
BG450607 similar to GP|21553745|gb| Yippee-like protein {Arabido... 33 0.21
BF647277 similar to GP|15810008|gb| At1g63980/F22C12_9 {Arabidop... 33 0.27
BF648545 32 0.35
BM779750 similar to PIR|T06036|T06 hypothetical protein T24A18.1... 32 0.35
TC83904 32 0.46
TC93474 GP|23615322|emb|CAD52313. hypothetical protein {Plasmodi... 32 0.60
AW697103 32 0.60
TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-lik... 31 0.79
TC83132 similar to GP|21593254|gb|AAM65203.1 S-adenosyl-L-methio... 30 1.8
TC83080 similar to PIR|E86445|E86445 hypothetical protein AAG234... 30 1.8
BF635065 weakly similar to GP|11037008|gb latent nuclear antigen... 30 1.8
BG450376 30 2.3
TC81331 similar to PIR|H96788|H96788 protein T4O12.26 [imported]... 30 2.3
TC77957 similar to GP|15450900|gb|AAK96721.1 Unknown protein {Ar... 30 2.3
BI311211 29 3.0
AJ498637 weakly similar to GP|10178104|dbj contains similarity t... 29 3.9
>BG448416 similar to GP|13509833|em unnamed protein product {Zea mays},
partial (61%)
Length = 658
Score = 43.9 bits (102), Expect = 1e-04
Identities = 36/134 (26%), Positives = 52/134 (37%), Gaps = 7/134 (5%)
Frame = +1
Query: 7 PPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAPS 66
PP ++ C GCRT A+G + C C ++ + IRC +C+ + P
Sbjct: 67 PPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPH 246
Query: 67 NLSKFPCPQCHVRIDVH-------ADVEEVNEKIDSEPVISCFHKFSQTVSQELDMLQNP 119
C CH +V V NE SE F SQTV +++NP
Sbjct: 247 GAPSVKCAVCHYITNVDMTNGRPPTPVRTPNETTSSETSRPRFE--SQTV-----VVENP 405
Query: 120 RETVGKQSVLVNEV 133
+V LV+ V
Sbjct: 406 M-SVDSSGKLVSNV 444
>TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - Arabidopsis
thaliana, partial (90%)
Length = 1472
Score = 42.4 bits (98), Expect = 3e-04
Identities = 17/71 (23%), Positives = 28/71 (38%)
Frame = +2
Query: 7 PPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAPS 66
PP ++ C GCRT +G + C C ++ V + + C +C+ + P
Sbjct: 404 PPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPY 583
Query: 67 NLSKFPCPQCH 77
C CH
Sbjct: 584 GAPSVKCAVCH 616
>TC88458 homologue to GP|16323143|gb|AAL15306.1 At1g32540/T9G5_1
{Arabidopsis thaliana}, partial (83%)
Length = 1084
Score = 37.4 bits (85), Expect = 0.011
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +1
Query: 8 PPPSTARAR--CAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAP 65
PPP T A+ C GC T +G + C C ++ + + C +C+ ++
Sbjct: 553 PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQ 732
Query: 66 SNLSKFPCPQCHVRIDVHA 84
C C+ V A
Sbjct: 733 YGARSVKCAVCNFVTSVGA 789
>TC84256
Length = 803
Score = 34.3 bits (77), Expect = 0.093
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 98 VISCFHKFSQTVSQEL 113
VISCFHKFSQTVSQ L
Sbjct: 305 VISCFHKFSQTVSQNL 352
Score = 32.3 bits (72), Expect = 0.35
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 98 VISCFHKFSQTVSQEL 113
VISC HKFSQTVSQ+L
Sbjct: 184 VISCIHKFSQTVSQKL 231
>BG450607 similar to GP|21553745|gb| Yippee-like protein {Arabidopsis
thaliana}, partial (53%)
Length = 573
Score = 33.1 bits (74), Expect = 0.21
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 83 HADVEEVNEKIDSEPVISCFHKFSQTVSQELDMLQNPRETVGKQSVLVNE 132
H + E+N K E +IS FHKFSQ V Q L + + T KQ++ E
Sbjct: 515 HGGLIEIN*KQFMENIISYFHKFSQMVLQVLVPVDKFK*TNSKQTIDAQE 366
>BF647277 similar to GP|15810008|gb| At1g63980/F22C12_9 {Arabidopsis
thaliana}, partial (9%)
Length = 671
Score = 32.7 bits (73), Expect = 0.27
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -2
Query: 96 EPVISCFHKFSQTVSQELDMLQNPR--ETVGKQSV 128
E VI+CFHKF QTVSQ L + + + +T K SV
Sbjct: 460 EHVINCFHKFCQTVSQILTCISSTKLIQTRPKHSV 356
>BF648545
Length = 567
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = -1
Query: 85 DVEEVNEKIDSEPVISCFHKFSQTVS 110
++ E+N KI + VISCFHK QTVS
Sbjct: 537 ELMEIN*KITFKHVISCFHKLYQTVS 460
>BM779750 similar to PIR|T06036|T06 hypothetical protein T24A18.10 -
Arabidopsis thaliana, partial (18%)
Length = 863
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = +3
Query: 149 DYRPSKLSIGSPHPDPIVETSSLSAVQPPEPTYDPKIKN 187
D +P G+P P + ETS L V P E DP +K+
Sbjct: 498 DSKPLSSDGGNPEPAVLTETSDLKNVNPDERKTDPSVKD 614
>TC83904
Length = 648
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 78 VRIDVHADVEEVNEKIDSEPVISCFHKFSQTVSQ 111
V I+ ++ E++ K + VISCFH+FSQT+SQ
Sbjct: 194 VFINYIGELMEIS*KKLMKIVISCFHEFSQTISQ 295
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 98 VISCFHKFSQTVSQEL 113
VISCFHKFS TVSQ L
Sbjct: 330 VISCFHKFS*TVSQVL 377
>TC93474 GP|23615322|emb|CAD52313. hypothetical protein {Plasmodium
falciparum 3D7}, partial (2%)
Length = 811
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = -3
Query: 92 KIDSEPVISCFHKFSQTVSQELDMLQNPRETVGKQSV------LVNEVEQ 135
K SE I+CF+KF QT+SQ L ++ R+ +S+ L+ E+++
Sbjct: 164 KTASEQAINCFYKFYQTISQVLMVVYKFRKVNPNKSIYMLIEHLIEEIQE 15
>AW697103
Length = 649
Score = 31.6 bits (70), Expect = 0.60
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 98 VISCFHKFSQTVSQEL 113
VISCFHK SQT+SQ L
Sbjct: 514 VISCFHKLSQTISQNL 561
>TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-like protein
{Arabidopsis thaliana}, partial (36%)
Length = 1176
Score = 31.2 bits (69), Expect = 0.79
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -3
Query: 98 VISCFHKFSQTVSQ 111
VISCFHKFS+TVSQ
Sbjct: 1171 VISCFHKFSRTVSQ 1130
>TC83132 similar to GP|21593254|gb|AAM65203.1
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase-like protein, partial (63%)
Length = 1075
Score = 30.0 bits (66), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 270 DMGASCISVHALNKLPYTKLDTKSVGVREGVIF 302
D+ S S+H L+K+P + LD KS+ +G +F
Sbjct: 52 DVFHSAFSLHWLSKIPESVLDKKSIAYNKGKVF 150
>TC83080 similar to PIR|E86445|E86445 hypothetical protein AAG23445.1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 1147
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2
Query: 92 KIDSEPVISCFHKFSQTVSQEL 113
K E VISCFHK SQTV Q L
Sbjct: 360 KTSFEHVISCFHKLSQTV*QVL 295
>BF635065 weakly similar to GP|11037008|gb latent nuclear antigen {Human
herpesvirus 8}, partial (3%)
Length = 681
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 152 PSKLSIGSPHPDPIVETSSLSAVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHL 211
P+ I HP P+V L P EPT+ + + L L L L++ RHL
Sbjct: 569 PADNPIEQLHPSPVVSLYLLHQHCPSEPTHSLSLVSPLFVLLVLLLLLRYHLLHLFLRHL 390
Query: 212 QH 213
QH
Sbjct: 389 QH 384
>BG450376
Length = 676
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 98 VISCFHKFSQTVSQEL 113
VIS FHKFSQT+SQ L
Sbjct: 188 VISYFHKFSQTISQNL 235
>TC81331 similar to PIR|H96788|H96788 protein T4O12.26 [imported] -
Arabidopsis thaliana, partial (69%)
Length = 696
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/76 (22%), Positives = 30/76 (39%)
Frame = -1
Query: 4 QPQPPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVN 63
+P PPPP R C FSA+ +A + + + S + S+ ++
Sbjct: 504 KPPPPPPPPPRRSF*ICSLCFSASLSIALFTASRPPISNRVTISGSVSNLASSNSLRALS 325
Query: 64 APSNLSKFPCPQCHVR 79
+ + P CHV+
Sbjct: 324 LRRSRHRTPLVSCHVK 277
>TC77957 similar to GP|15450900|gb|AAK96721.1 Unknown protein {Arabidopsis
thaliana}, partial (61%)
Length = 1689
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Frame = -2
Query: 155 LSIGSPHPDPIVETSSLSAVQPPEPTYD-PKIKNDLERSKA 194
LS S P P E+S LS++ P YD P NDL S+A
Sbjct: 602 LSSSSTCPKPDEESSCLSSLSSSAPKYDEPSFLNDLPYSRA 480
>BI311211
Length = 616
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 92 KIDSEPVISCFHKFSQTVSQ 111
K E VISCFHK QTVSQ
Sbjct: 476 KTTYEYVISCFHKLVQTVSQ 535
>AJ498637 weakly similar to GP|10178104|dbj contains similarity to unknown
protein~gb|AAF23194.1~gene_id:F15M7.1 {Arabidopsis
thaliana}, partial (33%)
Length = 655
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 99 ISCFHKFSQTVSQELDMLQNPRETVGKQSVLVNEVEQEEGDGGIAGET 146
ISCF KFS+TVSQ L P +L+N D +A ET
Sbjct: 312 ISCFIKFSKTVSQN---LCRPNIIASNGKLLINSTRTTSND-NLADET 181
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,326,934
Number of Sequences: 36976
Number of extensions: 247840
Number of successful extensions: 1556
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of query: 422
length of database: 9,014,727
effective HSP length: 99
effective length of query: 323
effective length of database: 5,354,103
effective search space: 1729375269
effective search space used: 1729375269
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148360.15