TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148360.12 + phase: 0 /pseudo
         (102 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG583023 similar to PIR|A86220|A86 protein F22O13.29 [imported] ...    29  0.33
TC86337 MtN1                                                           27  1.6
BG449703 weakly similar to PIR|T45588|T455 arm repeat containing...    27  1.6
TC82959 similar to GP|12321948|gb|AAG51005.1 unknown protein; 13...    25  3.7
TC76433 weakly similar to GP|15810483|gb|AAL07129.1 unknown prot...    25  6.3

>BG583023 similar to PIR|A86220|A86 protein F22O13.29 [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 827

 Score = 28.9 bits (63), Expect = 0.33
 Identities = 24/83 (28%), Positives = 35/83 (41%), Gaps = 2/83 (2%)
 Frame = -2

Query: 7   PPFDVIWVYSAIKFGCRK--SLKGDILEQISAAKALFQLISACSASVGGSKSIALLAPKA 64
           P  DVI +   + F  R    L+ D+    S  K+ F   ++   SV     I      +
Sbjct: 292 PVSDVISLLPDLMFSSRSMAGLRSDVSSSSSVLKSYFSFDTSTGTSV-----IFDNIGTS 128

Query: 65  MKEVKSLVDMILGFMSICCSKIS 87
           +KE+ SL D     +SICC   S
Sbjct: 127 LKEIGSLGDGQTSLLSICCQSSS 59


>TC86337 MtN1
          Length = 925

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 8   PFDVIWVYSAIKFGCRKSLKGDILEQI 34
           PFD+IWV S   FG  K+L   +LE++
Sbjct: 611 PFDLIWVKSDNSFGTYKNL---VLEKV 682


>BG449703 weakly similar to PIR|T45588|T455 arm repeat containing protein
           homolog - Arabidopsis thaliana, partial (6%)
          Length = 671

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (63%)
 Frame = +3

Query: 57  IALLAPKAMKEVKSLVDMILGFMSICCSKIS 87
           ++L  PK++     L+ ++L FMSICC  I+
Sbjct: 468 LSLEGPKSI-----LIHLVLSFMSICCLSIT 545


>TC82959 similar to GP|12321948|gb|AAG51005.1 unknown protein; 13339-10119
           {Arabidopsis thaliana}, partial (9%)
          Length = 710

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -1

Query: 18  IKFGCRKSLKGDILEQISAAKALFQLISACS 48
           +KF CR S   D  E +S+ +  F    ACS
Sbjct: 548 VKFKCR*SHSQDTKESLSSPRKTFNSFFACS 456


>TC76433 weakly similar to GP|15810483|gb|AAL07129.1 unknown protein
            {Arabidopsis thaliana}, partial (61%)
          Length = 2810

 Score = 24.6 bits (52), Expect = 6.3
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = +2

Query: 8    PFDVIWVYSAIKFGCRKS 25
            P+ ++W++S + F C+++
Sbjct: 1265 PYKMVWMFSTVLFNCQRT 1318


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,988,257
Number of Sequences: 36976
Number of extensions: 30223
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of query: 102
length of database: 9,014,727
effective HSP length: 78
effective length of query: 24
effective length of database: 6,130,599
effective search space: 147134376
effective search space used: 147134376
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)