BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148359.7 + phase: 0
(789 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 402 e-112
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 294 8e-80
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 113 3e-25
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 7e-18
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 79 7e-15
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 77 3e-14
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 6e-11
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 50 3e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 49 7e-06
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 7e-06
TC92306 49 1e-05
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 42 7e-04
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 40 0.003
BG644720 38 0.017
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 38 0.017
BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrio... 37 0.038
CB892255 37 0.038
TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG00... 35 0.15
TC83398 similar to PIR|T05150|T05150 hypothetical protein F18E5.... 33 0.42
TC77920 similar to GP|15809948|gb|AAL06901.1 AT3g10210/F14P13_19... 30 2.7
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 402 bits (1032), Expect = e-112
Identities = 191/197 (96%), Positives = 194/197 (97%)
Frame = -2
Query: 188 KSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 247
KSKDCEEPLI EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 248 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 307
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 308 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGE 367
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 368 NVVGYKPWYYDIKQFLL 384
NVV YKPWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 294 bits (753), Expect = 8e-80
Identities = 131/167 (78%), Positives = 154/167 (91%)
Frame = -2
Query: 92 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARGQMLLSEYDIVFKT 151
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK +TG+IAR QMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 152 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVF 211
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMYLK KDC+EPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 212 DGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 258
DGAVN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 46.6 bits (109), Expect = 4e-05
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +2
Query: 58 CVLGQRDETGKKEHAIYYLSKKFT 81
CVLGQ+DETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 113 bits (282), Expect = 3e-25
Identities = 62/196 (31%), Positives = 97/196 (48%)
Frame = +2
Query: 406 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 465
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 466 AMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRF 525
M D + + KC CQ + N + F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 526 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 585
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 586 EEFKIEHHNSSPYRPQ 601
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 686
Score = 58.9 bits (141), Expect(2) = 7e-18
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -3
Query: 635 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 691
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 692 NLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNY 750
IEE+R A+ R +YQ ++++ ++K V + K+G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 751 EG 752
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 7e-18
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 562 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 613
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial
(14%)
Length = 1708
Score = 79.0 bits (193), Expect = 7e-15
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 15/353 (4%)
Frame = +2
Query: 434 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 493
+L+ + HD T H G + +++ ++W ++ R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 494 ALNVMSSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 548
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 549 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 608
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 609 ANKNIKRIVQKMVT-TYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 667
N+ I+ +++ V + NW ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 668 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKV 727
+ V+ E + + + D I+ + + A R + + + D+ ++V
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 728 GELV---LKRRISQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 771
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 76.6 bits (187), Expect = 3e-14
Identities = 39/97 (40%), Positives = 59/97 (60%)
Frame = +3
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L N+ VW+++C+EAF+ +K YL PP+L P G L LY+++ +V VL + D
Sbjct: 477 LCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIAISSTAVSSVLIREDRG 656
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 103
+K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 657 EQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 65.9 bits (159), Expect = 6e-11
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 223 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 282
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 283 KGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 331
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 50.1 bits (118), Expect = 3e-06
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 53 DESVGCVLGQRDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 108
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 48.9 bits (115), Expect = 7e-06
Identities = 34/113 (30%), Positives = 51/113 (45%)
Frame = +2
Query: 208 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 267
G V+ +N G GA++++ G + + L T AEY A + G++ A K
Sbjct: 563 G*VW*SNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFK 742
Query: 268 HLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDEN 320
++ GDS LVINQI W+ +L A L F + HI R+ N
Sbjct: 743 YVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 48.9 bits (115), Expect = 7e-06
Identities = 35/101 (34%), Positives = 51/101 (49%), Gaps = 3/101 (2%)
Frame = +1
Query: 690 QLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVL--KRRISQQPDPRGKWT 747
+LN +EE R+DA Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 748 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 787
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>TC92306
Length = 521
Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 255 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 314
I G+ EA + +H+ + GD V Q G W+ ++ NL + A L + F V + H
Sbjct: 2 ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181
Query: 315 IPRDENQMADALA 327
+PR N ADA A
Sbjct: 182 VPRGXNXAADAQA 220
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 42.4 bits (98), Expect = 7e-04
Identities = 44/158 (27%), Positives = 69/158 (42%), Gaps = 3/158 (1%)
Frame = +2
Query: 34 PILVPPVEGRPLILYLSVFDESV---GCVLGQRDETGKKEHAIYYLSKKFTDCETRYTML 90
PILV P LI Y+ D S+ GCVL Q E I Y S++ E Y
Sbjct: 17 PILVLP----ELITYVVYTDASITGLGCVLTQH------EKVIAYASRQLRKHEGNYPTH 166
Query: 91 EKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARGQMLLSEYDIVFK 150
+ A+ +A K R YL + + +KYIF + + + R +++YD+
Sbjct: 167 DLEMAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDI- 343
Query: 151 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLK 188
T K +++AD L+ + +D E D D + L+
Sbjct: 344 TYYPGKANLVADALSRRRVDVSAEREADDLDGMVRALR 457
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Frame = +2
Query: 595 SSPYRPQMNGAVEAANKNIKRIVQ-KMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSL 653
SS Y P +G EA NK + ++ M T W + P+A + Y T+ S TPF
Sbjct: 83 SSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEYWYNTSYNISAAMTPFKA 262
Query: 654 VYGME 658
+YG +
Sbjct: 263 LYGRD 277
>BG644720
Length = 678
Score = 37.7 bits (86), Expect = 0.017
Identities = 31/112 (27%), Positives = 48/112 (42%)
Frame = -3
Query: 412 DILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDC 471
+ LY ++ VLL C+ E E Q H G+H + + + R GYYW
Sbjct: 358 ETLYI*LFEGVLL*CLGEEETIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYW------- 206
Query: 472 YQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 523
K + A+ I PP L+ + F W +++ G + PK+S GH
Sbjct: 205 --NT*IMLKGALLANFIQQPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 37.7 bits (86), Expect = 0.017
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = -3
Query: 521 NGHRFILVAIDYFTKWVEAASYTNVTKQVVA-KFIKNNIICRYGVPSKII-TDNGTNLNN 578
+ H++ + ID +K+ + + + A K + + Y KI+ +DNG +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 579 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV 621
++ + I H S PY PQ NG + NK++ + + ++
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLM 75
>BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrioides},
partial (2%)
Length = 780
Score = 36.6 bits (83), Expect = 0.038
Identities = 21/69 (30%), Positives = 32/69 (45%)
Frame = +1
Query: 261 AIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDEN 320
AI + I+ + Y DS L +N IK + HH + + + + LHH R+ N
Sbjct: 496 AISLNIEEMVCYSDSLLTVNLIKEDISQHHVYAVLIHNI--KYIMSSRNFTLHHTLREGN 669
Query: 321 QMADALATL 329
Q AD + L
Sbjct: 670 QCADFMVKL 696
>CB892255
Length = 853
Score = 36.6 bits (83), Expect = 0.038
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = +1
Query: 654 VYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMK 713
V+ ++A+ ++V++ S+ V +AK+ C R ++RG S +
Sbjct: 31 VFNVKALCHMKVKVLSMEVPKKAKID*T*KCYCRVP---------WTVISRG*SKYST-- 177
Query: 714 TAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYE 751
KK PRE + VLK + P+ RGKW PNY+
Sbjct: 178 ----KKARPRECQESGFVLKNML---PNSRGKWMPNYK 270
>TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG005I10.16 -
Arabidopsis thaliana, partial (19%)
Length = 2073
Score = 34.7 bits (78), Expect = 0.15
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 7/101 (6%)
Frame = -1
Query: 249 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYAR--RLLTY 306
AE+ AC+ IE+A+++ + ++ + DS V+N H IP++ R + +
Sbjct: 396 AEFCACMIAIEKAMELGLNNICLETDSLKVVNAF------HKIVGIPWQMRVRWHNCIRF 235
Query: 307 FTKVE--LHHIPRDENQMADALATLS---SMFRVNHWNDVP 342
+ HIPR+ N +ADALA S+F + W P
Sbjct: 234 CHSIACVCVHIPREGNLVADALARHGQGLSLFFLQWWPAPP 112
>TC83398 similar to PIR|T05150|T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana, partial (6%)
Length = 766
Score = 33.1 bits (74), Expect = 0.42
Identities = 28/99 (28%), Positives = 43/99 (43%)
Frame = +2
Query: 233 HIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAN 292
HI + ILF AE A + G++ A + I + Y DS +N I G +HA
Sbjct: 116 HIDHSNDILF------AELHAILMGLQLAQTLNIVDVVCYSDSLHYVNLINGPSVVYHAY 277
Query: 293 LIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 331
+D + ++ H R+ N+ AD LA L +
Sbjct: 278 ATLIQD-----IKDLIRLSKLHTLREGNRCADFLAKLGA 379
>TC77920 similar to GP|15809948|gb|AAL06901.1 AT3g10210/F14P13_19
{Arabidopsis thaliana}, partial (78%)
Length = 1156
Score = 30.4 bits (67), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -2
Query: 30 LLEPPILVPPVEGRPLILYLSVFDESVGC 58
+L PP+ +PP+ P +L+ SV GC
Sbjct: 117 MLRPPLRIPPMNSSPPLLFFSVIPVQRGC 31
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,745,309
Number of Sequences: 36976
Number of extensions: 380087
Number of successful extensions: 1922
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of query: 789
length of database: 9,014,727
effective HSP length: 104
effective length of query: 685
effective length of database: 5,169,223
effective search space: 3540917755
effective search space used: 3540917755
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC148359.7