BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148349.4 - phase: 0
(151 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF638163 62 9e-11
AL375902 similar to GP|9759134|dbj mutator-like transposase-like... 48 1e-06
BF646328 similar to PIR|F84533|F845 Mutator-like transposase [im... 37 0.004
TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like... 32 0.074
TC89641 similar to GP|9988432|dbj|BAB12698.1 hypothetical protei... 28 1.1
BE324290 similar to GP|19310639|gb unknown protein {Arabidopsis ... 28 1.4
TC91357 similar to GP|2194137|gb|AAB61112.1| ESTs gb|R29947 gb|H... 27 3.1
BG645191 similar to GP|2194137|gb| ESTs gb|R29947 gb|H76702 come... 27 3.1
TC80476 similar to GP|9988432|dbj|BAB12698.1 hypothetical protei... 27 3.1
TC92416 similar to PIR|S58321|S58321 probable membrane protein Y... 27 4.1
TC77880 similar to GP|9622153|gb|AAF89645.1| seed maturation pro... 27 4.1
BQ137236 weakly similar to GP|19070096|emb UL49 tegument protein... 26 5.3
BE319298 similar to GP|17385689|dbj putative Myb-related transcr... 26 5.3
TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar... 26 5.3
AA660199 26 5.3
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 26 6.9
CA859442 homologue to SP|P43955|NQRA_ Na(+)-translocating NADH-q... 26 6.9
CB065297 weakly similar to PIR|G83068|G830 hypothetical protein ... 25 9.1
TC78967 similar to GP|21554283|gb|AAM63358.1 putative transcript... 25 9.1
BQ150123 similar to GP|21109992|gb| TonB-dependent receptor {Xan... 25 9.1
>BF638163
Length = 687
Score = 62.0 bits (149), Expect = 9e-11
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = +2
Query: 118 MKRTYNDTQCGRCGLIGHNLRGCNKQGVARRPKD 151
MK+TYNDTQCGRCGL+GH+ R C K GVARRPK+
Sbjct: 380 MKKTYNDTQCGRCGLMGHSSRSCAK*GVARRPKN 481
>AL375902 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (20%)
Length = 542
Score = 48.1 bits (113), Expect = 1e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Frame = +2
Query: 59 TLGSYRATYNYFIQPVNSQIYWEPTPYEKSA-----------PPKVRRAAGRPKKNRRKD 107
T+ SYR Y+ I P+ + W PPK+RR GRPKK +
Sbjct: 119 TVQSYRMAYSQMIYPIPDKSQWREHGEGAEGGGGARVDIVIHPPKIRRPPGRPKKKVLRV 298
Query: 108 GNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGC 140
N KR QCGRC ++GH+ + C
Sbjct: 299 EN--------FKRPKRVVQCGRCHMLGHSQKKC 373
>BF646328 similar to PIR|F84533|F845 Mutator-like transposase [imported] -
Arabidopsis thaliana, partial (3%)
Length = 636
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = -3
Query: 65 ATYNYFIQPVNSQIYWEPTPYEKSAPPKVRRAAGRPKKNRRK 106
ATY++ + P + W T E P RR+AGRPKK R+K
Sbjct: 175 ATYSHIVLPSSGPKLWPVTNTEHINPLAKRRSAGRPKKLRKK 50
>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like transposase
{Arabidopsis thaliana}, partial (57%)
Length = 2129
Score = 32.3 bits (72), Expect = 0.074
Identities = 18/57 (31%), Positives = 23/57 (39%)
Frame = +3
Query: 90 PPKVRRAAGRPKKNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGCNKQGVA 146
PPK RR GRP+K R I R + C RC GH C + ++
Sbjct: 1746 PPKFRRPPGRPEKKR--------ICVEDHNRDKHTVHCSRCNQTGHYKTTCKAEMIS 1892
>TC89641 similar to GP|9988432|dbj|BAB12698.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (44%)
Length = 1080
Score = 28.5 bits (62), Expect = 1.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 126 QCGRCGLIGHNLRGCN 141
+C CG IGHN R CN
Sbjct: 93 KCSHCGNIGHNSRTCN 140
>BE324290 similar to GP|19310639|gb unknown protein {Arabidopsis thaliana},
partial (34%)
Length = 327
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/34 (41%), Positives = 17/34 (49%)
Frame = +3
Query: 37 TPLWSGDTPMQRYQIEHCHAWLTLGSYRATYNYF 70
T LWS ++RY E CH WL Y +YF
Sbjct: 201 TALWSS---LERYLSEVCHLWLH*AFYYMEEDYF 293
>TC91357 similar to GP|2194137|gb|AAB61112.1| ESTs gb|R29947 gb|H76702 come
from this gene. {Arabidopsis thaliana}, partial (40%)
Length = 766
Score = 26.9 bits (58), Expect = 3.1
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +3
Query: 127 CGRCGLIGHNLRGCNKQG 144
C +CG GHN R CN G
Sbjct: 228 CSQCGNNGHNSRTCNDGG 281
>BG645191 similar to GP|2194137|gb| ESTs gb|R29947 gb|H76702 come from this
gene. {Arabidopsis thaliana}, partial (40%)
Length = 649
Score = 26.9 bits (58), Expect = 3.1
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +1
Query: 127 CGRCGLIGHNLRGCNKQG 144
C +CG GHN R CN G
Sbjct: 121 CSQCGNNGHNSRTCNDGG 174
>TC80476 similar to GP|9988432|dbj|BAB12698.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (34%)
Length = 778
Score = 26.9 bits (58), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 126 QCGRCGLIGHNLRGC 140
+C CG IGHN R C
Sbjct: 46 KCSHCGKIGHNCRTC 90
>TC92416 similar to PIR|S58321|S58321 probable membrane protein YOR309c -
yeast (Saccharomyces cerevisiae), partial (15%)
Length = 448
Score = 26.6 bits (57), Expect = 4.1
Identities = 16/60 (26%), Positives = 26/60 (42%)
Frame = +1
Query: 64 RATYNYFIQPVNSQIYWEPTPYEKSAPPKVRRAAGRPKKNRRKDGNKEPIGRSQMKRTYN 123
+A +FIQP+ P + P +R G K+ RRK + R +++ YN
Sbjct: 88 QAFRKFFIQPLGHHHQLPLNPLGLNFQPWIRSLEGE*KEKRRKRRRRRRKRRRRIEPNYN 267
>TC77880 similar to GP|9622153|gb|AAF89645.1| seed maturation protein PM34
{Glycine max}, partial (98%)
Length = 1112
Score = 26.6 bits (57), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +3
Query: 22 QQSRLEKEKNASHNWTPLWSGDTPMQRYQIEHCH 55
Q S+ K++S +W LW+ MQ I CH
Sbjct: 180 QASK*ASRKDSSGDWR*LWNRTCSMQLVCIRRCH 281
>BQ137236 weakly similar to GP|19070096|emb UL49 tegument protein
{Pseudorabies virus}, partial (10%)
Length = 1224
Score = 26.2 bits (56), Expect = 5.3
Identities = 14/34 (41%), Positives = 17/34 (49%)
Frame = +2
Query: 96 AAGRPKKNRRKDGNKEPIGRSQMKRTYNDTQCGR 129
AAGRP+KNR + R RT T+ GR
Sbjct: 128 AAGRPRKNRGDRRAQGAAARRARGRTTKKTRAGR 229
>BE319298 similar to GP|17385689|dbj putative Myb-related transcription
factor {Oryza sativa (japonica cultivar-group)}, partial
(20%)
Length = 425
Score = 26.2 bits (56), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 126 QCGRCGLIGHNLRGCN 141
+C CG GHN R CN
Sbjct: 38 KCSYCGNFGHNSRTCN 85
>TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
thaliana}, partial (71%)
Length = 974
Score = 26.2 bits (56), Expect = 5.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 93 VRRAAGRPKKNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGC 140
V A G P+ +R ++E +GR +C CG+ GH R C
Sbjct: 266 VEFAKGVPRGSRDSRDSREYLGRGPPP---GSGRCFNCGIDGHWARDC 400
>AA660199
Length = 434
Score = 26.2 bits (56), Expect = 5.3
Identities = 9/26 (34%), Positives = 17/26 (64%)
Frame = -3
Query: 71 IQPVNSQIYWEPTPYEKSAPPKVRRA 96
+QP ++ ++ P+ +K PP V+RA
Sbjct: 342 MQPARARDFYXPSVIKKQTPPSVKRA 265
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 25.8 bits (55), Expect = 6.9
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = +1
Query: 80 WEPTPYEKSAPPKVRRAAGRPK 101
W +EKS PP ++ G PK
Sbjct: 532 WRGKSFEKSPPPPFQKGGGSPK 597
>CA859442 homologue to SP|P43955|NQRA_ Na(+)-translocating NADH-quinone
reductase subunit A (EC 1.6.5.-) (Na(+)-translocating
NQR subunit, partial (2%)
Length = 524
Score = 25.8 bits (55), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Frame = +3
Query: 105 RKDGNKEPIGRSQM--KRTYNDTQCGRCG 131
R G+ IGR K+TY+ T CG CG
Sbjct: 198 RSGGSGPKIGRIPPGEKKTYHQTICGSCG 284
>CB065297 weakly similar to PIR|G83068|G830 hypothetical protein PA4607
[imported] - Pseudomonas aeruginosa (strain PAO1),
partial (50%)
Length = 301
Score = 25.4 bits (54), Expect = 9.1
Identities = 10/26 (38%), Positives = 12/26 (45%)
Frame = -2
Query: 34 HNWTPLWSGDTPMQRYQIEHCHAWLT 59
H W+ L G P R CH+W T
Sbjct: 153 HRWSVLRLGPWPCLRTARSSCHSWRT 76
>TC78967 similar to GP|21554283|gb|AAM63358.1 putative transcription factor
{Arabidopsis thaliana}, partial (62%)
Length = 1340
Score = 25.4 bits (54), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 18 LCPWQQSRLEKEKNASHNWTPLWSGDTPMQRY 49
+ PW+Q ++E + +T LW +TP+ Y
Sbjct: 998 ILPWRQRKVENHQLTYIFFTRLWLHETPLFFY 903
>BQ150123 similar to GP|21109992|gb| TonB-dependent receptor {Xanthomonas
axonopodis pv. citri str. 306}, partial (2%)
Length = 1131
Score = 25.4 bits (54), Expect = 9.1
Identities = 20/53 (37%), Positives = 22/53 (40%)
Frame = +1
Query: 98 GRPKKNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGCNKQGVARRPK 150
GR KKNRRK G E G + KR G G G RG G + K
Sbjct: 58 GRKKKNRRKGGRGEG-GTKEQKRAERYDSKGPEG-AGGGKRGGKTNGTKKYKK 210
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,598,971
Number of Sequences: 36976
Number of extensions: 83597
Number of successful extensions: 511
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of query: 151
length of database: 9,014,727
effective HSP length: 88
effective length of query: 63
effective length of database: 5,760,839
effective search space: 362932857
effective search space used: 362932857
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148349.4