Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148291.4 + phase: 0 /pseudo
         (659 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...   204  9e-53
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...   167  9e-42
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...   105  7e-26
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...   111  1e-24
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr...    72  3e-16
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ...    64  4e-14
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    53  3e-07
BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...    53  3e-07
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ...    43  3e-04
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p...    37  0.024
BG644733 weakly similar to GP|15289942|db putative polyprotein {...    37  0.024
TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical...    33  0.27
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t...    32  1.0
BF636649 similar to GP|21628724|emb OSJNBa0033H08.7 {Oryza sativ...    30  2.3
AL374660 similar to GP|16518983|gb| acyl carrier protein {Olea e...    30  3.9
AW980681 similar to GP|23237931|dbj contains ESTs C26074(C11585)...    29  5.0
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    29  6.6
TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H1...    29  6.6
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    29  6.6
TC83821 similar to GP|8953400|emb|CAB96673.1 1-D-deoxyxylulose 5...    28  8.6

>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score =  204 bits (519), Expect = 9e-53
 Identities = 114/251 (45%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
 Frame = +2

Query: 102 TIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAA 161
           T AP+L+LP+    +VVY DAS  GLG VL Q  KV+AYASRQLR HE NYPTHDLE+AA
Sbjct: 8   TSAPILVLPELIT-YVVYTDASITGLGCVLTQHEKVIAYASRQLRKHEGNYPTHDLEMAA 184

Query: 162 VVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNY 221
           VVF LKIWR YLYG+     + ++ +DHKSLKY+F Q ELN+RQRRW+E + DYD  + Y
Sbjct: 185 VVFALKIWRSYLYGA-----KVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITY 349

Query: 222 HPG*ANVVADALSRKTLHMSALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKID-SDFL 280
           +PG AN+VADALSR+ + +SA   +E + L+       +  L+  +  LG+  ++ +D  
Sbjct: 350 YPGKANLVADALSRRRVDVSA--EREADDLDGMVRALRLNVLTKATESLGLEAVNQADLF 523

Query: 281 NSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHK 340
             IR AQ  D    + +      + ++++    G +   G++ +P++  LK+ I+ E+HK
Sbjct: 524 TRIRLAQGQD----ENLQKVAQNDRTEYQTAKDGTILVNGRISVPNDRSLKEEIMSEAHK 691

Query: 341 SRLSIHPGATK 351
           SR S+HPGA +
Sbjct: 692 SRFSVHPGAPR 724


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
           blast fungus gypsy retroelement (fragment), partial
           (14%)
          Length = 1708

 Score =  167 bits (424), Expect = 9e-42
 Identities = 110/333 (33%), Positives = 168/333 (50%), Gaps = 14/333 (4%)
 Frame = +2

Query: 306 SDFKVDDQGVLRFRGKVCIPDNE-------ELKKLILEESHKSRLSIHPGATKMYHDLKK 358
           S+ ++D    L FRG++ +P ++       EL+  +++ESH S  + HPG       + +
Sbjct: 74  SECQLDSLKRLTFRGRIWVPGSDDEESPLNELRTKLVQESHDSTAAGHPGRNGTLEIVSR 253

Query: 359 LFWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTP 418
            F+W G  + V +FV  C +C    +  Q   G L PL VP      +SMDF+TSLP T 
Sbjct: 254 KFFWPGQSQTVRRFVRNCDVCGGIHIWRQAKRGFLKPLPVPNRLHSDLSMDFITSLPPTR 433

Query: 419 -RGHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTS 477
            RG   +WV+VDRL+KS     ++     A  A+ ++    + HG+P SIVSDR   +  
Sbjct: 434 GRGSQYLWVIVDRLSKSVTLEEMDTMEAEA-CAQRFLSCHYRFHGMPQSIVSDRGSNWVG 610

Query: 478 RFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFT 537
           RFW+      G    LS++YHPQTDG +ER  Q ++ +LR  V      W   LP ++  
Sbjct: 611 RFWREFCRLTGVTQLLSTSYHPQTDGGTERWNQEIQAVLRAYVCWSQDNWGDLLPTVQLA 790

Query: 538 YNNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPD-----LVHETTEKVRLIRER 592
             N ++SSIG  PF   +G     P+   E    VV   +     LV    +    I+  
Sbjct: 791 LRNRHNSSIGATPFFVEHGYHV-DPIPTVEDTGGVVSEGEAAAQLLVKRMKDVTGFIQAE 967

Query: 593 MKASQSRQKSYHDKRRKELE-FQEGDHVFLRVT 624
           + A+Q R ++  +KRR   + +Q GD V+L V+
Sbjct: 968 IVAAQQRSEASANKRRCPADRYQVGDKVWLNVS 1066


>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score =  105 bits (263), Expect(3) = 7e-26
 Identities = 50/78 (64%), Positives = 65/78 (83%)
 Frame = +3

Query: 245 VKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTSGNDTE 304
           ++ +  LE FRD+SLVCE+S QS+ LGMLKI+++FL+SI+EAQKVD+K VDLM   N TE
Sbjct: 51  LESWSCLEQFRDLSLVCEVSPQSVKLGMLKINNEFLDSIKEAQKVDVKLVDLMFGNNQTE 230

Query: 305 DSDFKVDDQGVLRFRGKV 322
           D DFKVDDQGVL+FR ++
Sbjct: 231 DGDFKVDDQGVLQFRDRI 284



 Score = 25.4 bits (54), Expect(3) = 7e-26
 Identities = 11/13 (84%), Positives = 12/13 (91%)
 Frame = +1

Query: 228 VVADALSRKTLHM 240
           VVAD LSRKTLH+
Sbjct: 1   VVADVLSRKTLHV 39



 Score = 24.6 bits (52), Expect(3) = 7e-26
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +2

Query: 330 LKKLILEESHKSRLS 344
           +KK+ILEESH+S ++
Sbjct: 284 MKKMILEESHRSNVN 328


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
            alternata}, partial (21%)
          Length = 1540

 Score =  111 bits (277), Expect = 1e-24
 Identities = 67/161 (41%), Positives = 89/161 (54%), Gaps = 6/161 (3%)
 Frame = +1

Query: 8    KCEFWLSEVSFLGHIIF-GSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEG 66
            KCEF ++ V ++G I+  G  ++ DP K+ A+  W    SV   RSFLG   YY+ FI G
Sbjct: 1030 KCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPG 1209

Query: 67   FSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLG 126
            +S++  P T+LT K   F W A+ E +F +LKR     PVL +  PE    V  D S   
Sbjct: 1210 YSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFA 1389

Query: 127  LGGVLMQD-----GKVVAYASRQLRVHEKNYPTHDLELAAV 162
            LGGVL Q+        VA+ S++L   E NYP HD EL AV
Sbjct: 1390 LGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAV 1512


>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
           sativa (japonica cultivar-group)}, partial (7%)
          Length = 674

 Score = 72.0 bits (175), Expect(2) = 3e-16
 Identities = 37/81 (45%), Positives = 46/81 (56%)
 Frame = +2

Query: 477 SRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEF 536
           S FWK+L    G+ L +SSAYHP +DGQSE   +  E  LR  +      W    P  E+
Sbjct: 32  SNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEY 211

Query: 537 TYNNSYHSSIGMAPFEALYGR 557
            YN SY+ S  M PF+ALYGR
Sbjct: 212 WYNTSYNISAAMTPFKALYGR 274



 Score = 31.6 bits (70), Expect(2) = 3e-16
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = +1

Query: 596 SQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALK 634
           +Q   K   DK+R+  EFQ G+HV +++ P      AL+
Sbjct: 388 AQQTMKHQADKKRRHFEFQLGEHVLVKLQPYQQSSVALR 504


>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (13%)
          Length = 763

 Score = 64.3 bits (155), Expect(2) = 4e-14
 Identities = 36/106 (33%), Positives = 55/106 (50%), Gaps = 4/106 (3%)
 Frame = +3

Query: 62  RFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCD 121
           RFI   +   LP  +L C  K FVWD +CE +F +LK+ LT  PVL  P+  +   +Y  
Sbjct: 429 RFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIA 608

Query: 122 ASKLGLGGVLMQDG----KVVAYASRQLRVHEKNYPTHDLELAAVV 163
            S   +  VL+++     K + Y S+++   E  YPT +    AV+
Sbjct: 609 ISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVI 746



 Score = 32.0 bits (71), Expect(2) = 4e-14
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = +2

Query: 7   SKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLG 55
           +KC F ++   FLG+I+    I V+P ++ A+    + K+  E++   G
Sbjct: 263 AKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDLPSPKNSREVQRLTG 409


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
           (10%)
          Length = 624

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
 Frame = +2

Query: 334 ILEESHKSRLSIHPGATKMYHDLKKL-FWWSGLKRDVAQFVYACLICQKS---KVEHQKP 389
           IL   H S  + H   +K    +++  FWW  + +D   F+  C  CQ+       ++ P
Sbjct: 104 ILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAHSFISKCDPCQRQGNIS*RNEMP 283

Query: 390 AGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYPVAQL 449
              +  ++V    +D   +DF+   P++   +  I V VD ++K    I    N     +
Sbjct: 284 QNFILEVEV----FDVWGIDFMGPFPSS-YNNKYILVAVDYVSKWVEAIASPTN-DATVV 445

Query: 450 AEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSE 506
            +++   +    GVP  ++SD    F ++ +++L    G + ++++AYHPQ   +S+
Sbjct: 446 VKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKNGVRHKVATAYHPQKAERSK 616


>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
           partial (82%)
          Length = 559

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 7/38 (18%)
 Frame = +2

Query: 628 GVGRALKSRKLTPKFIGPYQISD-------RVGLPPHL 658
           GVGRALKS+KLT +FIGPYQIS+       RVGLPPHL
Sbjct: 2   GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHL 115


>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
           melanogaster}, partial (20%)
          Length = 192

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 29/43 (66%)
 Frame = +1

Query: 138 VAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
           +AYASR L   E+NY   + E  A ++ ++ +RHYL+G +FE+
Sbjct: 64  IAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKFEL 192


>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (7%)
          Length = 686

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 20/71 (28%), Positives = 37/71 (51%)
 Frame = -2

Query: 461 HGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCV 520
           HG+P  IV+D    F S  ++   +    +L  +S  +PQ++GQ+E + + + D L+  +
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRL 506

Query: 521 LEQGGAWDSHL 531
             + G W   L
Sbjct: 505 DLKKGCWADEL 473


>BG644733 weakly similar to GP|15289942|db putative polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (1%)
          Length = 174

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 18/43 (41%), Positives = 26/43 (59%)
 Frame = -3

Query: 419 RGHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLH 461
           + +++I VVVDRLTKS  FIP   +Y     A I +  +V +H
Sbjct: 130 KSYESI*VVVDRLTKSTLFIPFKTSYSAK*YARILLDEIVCIH 2


>TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical
           protein~similar to gag-pol polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (4%)
          Length = 1019

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 13/84 (15%)
 Frame = +2

Query: 368 DVAQFVYACLICQKSKVEHQKPAGLLTPLD-------------VPEWKWDSISMDFVTSL 414
           D  +  +A L   + K E  KP G L  ++             VP+  W+ +++DF   L
Sbjct: 350 DAIKIKFAPLPLNEGKEEF-KPLGFLADMEPFKDKTKLCLLRPVPKPPWEDVTIDFSLGL 526

Query: 415 PNTPRGHDAIWVVVDRLTKSAHFI 438
             T +  D+  VV D+ ++ AHFI
Sbjct: 527 L*TQQLKDSKMVVGDKFSRMAHFI 598


>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
           partial (6%)
          Length = 469

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 23/68 (33%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 584 EKVRL-IRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKF 642
           E++RL   E  K  + R K +HD+R    EF+EG+ V L  + L      L   KL   +
Sbjct: 118 EELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRL-----KLFPGKLRSHW 282

Query: 643 IGPYQISD 650
            GP+Q+ +
Sbjct: 283 SGPFQVKN 306


>BF636649 similar to GP|21628724|emb OSJNBa0033H08.7 {Oryza sativa}, partial
           (4%)
          Length = 653

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/55 (30%), Positives = 26/55 (46%)
 Frame = +1

Query: 501 TDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALY 555
           +D Q+     +LE  L     EQ G  +  L   E  YN ++H + G  PF+ +Y
Sbjct: 7   SDEQAGLLNHTLETHLLYFTSEQQGV*NFFLTWAECLYNTNFHRTAGCTPFKVVY 171


>AL374660 similar to GP|16518983|gb| acyl carrier protein {Olea europaea},
           partial (45%)
          Length = 363

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = +1

Query: 168 IWRHYLYGSRFEVFRFE 184
           IW+ +L+G RF VF+FE
Sbjct: 262 IWKFFLFGKRFSVFQFE 312


>AW980681 similar to GP|23237931|dbj contains ESTs C26074(C11585)
           AU092275(C11585)~unknown protein, partial (11%)
          Length = 748

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 6   LSKCEFWLSEVSFLGHIIFGSDIAV 30
           LSK  FW S + FL H+ F +D+ V
Sbjct: 254 LSKVSFWASSIHFLYHVQFHNDLHV 328


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
           retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +2

Query: 617 DHVFLRVTPLT-GVGRALKSRKLTPKFIGPYQISDRVG-------LPPHLS 659
           + V L+V P   G  R  K  KL+ ++IGP+++  R+G       LPP LS
Sbjct: 2   EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLS 154


>TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H12R.24 -
            Arabidopsis thaliana, partial (38%)
          Length = 2831

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 25/93 (26%), Positives = 42/93 (44%)
 Frame = +1

Query: 220  NYHPG*ANVVADALSRKTLHMSALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDF 279
            +YHP   + +A  LS  +   + + + +   L  F+DMS+  ELSF+    G +K+++  
Sbjct: 2176 HYHPA-ISTMATGLSSMSTEQNQVFLSKSSPLLAFKDMSIDQELSFE--QSGSIKLNNKR 2346

Query: 280  LNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDD 312
              S   A    +        G+ T  S F  DD
Sbjct: 2347 KRSHGNATSDSI--------GSTTVTSSFNEDD 2421


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = -2

Query: 161 AVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLN 220
           A+ +  K  RHY+      +      S    +KY+F++  L  R  RW  LL +YD  + 
Sbjct: 623 ALAWAAKRLRHYMINHTTWLV-----SKMDPIKYIFEKPALTGRIARWQMLLSEYD--IE 465

Query: 221 YHPG*A---NVVADALSRKTL 238
           Y    A   +++AD L+ + L
Sbjct: 464 YRSQKAIKGSILADHLAHQPL 402


>TC83821 similar to GP|8953400|emb|CAB96673.1 1-D-deoxyxylulose 5-phosphate
           synthase-like protein {Arabidopsis thaliana}, partial
           (46%)
          Length = 1172

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = -3

Query: 403 WDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFI 438
           W+SI   FV     TPR   A W+V+D ++ S H +
Sbjct: 762 WNSIKYSFVFPNQGTPRIPKANWLVID-MSSSRHHV 658


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,247,623
Number of Sequences: 36976
Number of extensions: 297843
Number of successful extensions: 1368
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of query: 659
length of database: 9,014,727
effective HSP length: 102
effective length of query: 557
effective length of database: 5,243,175
effective search space: 2920448475
effective search space used: 2920448475
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)


Medicago: description of AC148291.4