BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.9 - phase: 0
(52 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80139 homologue to PIR|T48868|T48868 zinc finger protein [impo... 119 2e-28
TC79355 similar to GP|15081721|gb|AAK82515.1 At1g04990/F13M7_1 {... 65 4e-12
CB894488 similar to GP|6437560|gb| hypothetical protein {Arabido... 63 2e-11
TC84075 similar to GP|3738297|gb|AAC63639.1| unknown protein {Ar... 62 6e-11
TC87644 similar to GP|10177307|dbj|BAB10568. contains similarity... 56 3e-09
TC83740 similar to GP|6437560|gb|AAF08587.1| hypothetical protei... 56 3e-09
AW682928 similar to GP|22507458|gb| Unknown (protein for MGC:303... 54 1e-08
TC80929 similar to GP|10177307|dbj|BAB10568. contains similarity... 54 1e-08
CB895149 similar to GP|6437560|gb|A hypothetical protein {Arabid... 50 1e-07
TC79991 similar to GP|10177307|dbj|BAB10568. contains similarity... 50 2e-07
TC85096 similar to GP|22507458|gb|AAH19429.1 Unknown (protein fo... 49 4e-07
TC82244 similar to GP|22507458|gb|AAH19429.1 Unknown (protein fo... 49 4e-07
AL365712 similar to GP|3738297|gb|A unknown protein {Arabidopsis... 45 4e-06
BM779407 similar to GP|6437560|gb|A hypothetical protein {Arabid... 40 2e-04
AL366906 weakly similar to PIR|T45743|T45 hypothetical protein F... 29 0.43
TC92368 weakly similar to GP|19347974|gb|AAL86319.1 unknown prot... 28 0.56
TC77987 weakly similar to GP|17979277|gb|AAL49864.1 unknown prot... 28 0.74
TC93043 weakly similar to PIR|C84918|C84918 probable ATP-depende... 27 1.3
BG646281 weakly similar to PIR|E84465|E844 hypothetical protein ... 25 6.2
>TC80139 homologue to PIR|T48868|T48868 zinc finger protein [imported] -
garden pea, partial (87%)
Length = 1402
Score = 119 bits (299), Expect = 2e-28
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +3
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL
Sbjct: 336 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 488
Score = 53.9 bits (128), Expect = 1e-08
Identities = 18/35 (51%), Positives = 27/35 (76%)
Frame = +3
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
+PE P +P+C +Y++TG C+FGA CRF+HP R +
Sbjct: 1128 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTI 1232
Score = 52.8 bits (125), Expect = 3e-08
Identities = 19/36 (52%), Positives = 26/36 (71%)
Frame = +3
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
YP P E +C+YY+RTG C+FG TC+F+HP +V
Sbjct: 657 YPLRPNESECAYYLRTGQCKFGNTCKFHHPQPSNMV 764
Score = 45.8 bits (107), Expect = 3e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 1269 PLRPGEPLCVFYSRHGICKFGPSCKFDHP 1355
>TC79355 similar to GP|15081721|gb|AAK82515.1 At1g04990/F13M7_1 {Arabidopsis
thaliana}, partial (42%)
Length = 1627
Score = 65.5 bits (158), Expect = 4e-12
Identities = 23/36 (63%), Positives = 30/36 (82%)
Frame = +1
Query: 13 ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
+S PYP+ PGEPDC YY+RTG+C +G+ CR+NHP N
Sbjct: 304 QSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPAN 411
Score = 53.5 bits (127), Expect = 2e-08
Identities = 16/33 (48%), Positives = 28/33 (84%)
Frame = +1
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 50
PE G+PDC Y+++TG C++G+TC+++HP +R+
Sbjct: 445 PERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRR 543
Score = 48.9 bits (115), Expect = 4e-07
Identities = 15/32 (46%), Positives = 24/32 (74%)
Frame = +2
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
P+ P +PDC Y++ TG C++G+ C+F+HP R
Sbjct: 998 PDRPEQPDCKYFMSTGTCKYGSDCKFHHPKER 1093
Score = 44.3 bits (103), Expect = 1e-05
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 7 RPSETMESGPY--PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
R ++T+ P P PG CSYY G+C+FG TC+F+HP
Sbjct: 1091 RIAQTLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHP 1216
Score = 42.0 bits (97), Expect = 5e-05
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +2
Query: 23 EPDCSYYIRTGLCRFGATCRFNHP 46
E C YY+RTG C+FG C+F+HP
Sbjct: 596 EKSCPYYMRTGSCKFGVACKFHHP 667
>CB894488 similar to GP|6437560|gb| hypothetical protein {Arabidopsis
thaliana}, partial (37%)
Length = 830
Score = 63.2 bits (152), Expect = 2e-11
Identities = 27/52 (51%), Positives = 34/52 (64%)
Frame = +1
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
MWQ+ L + E YP+ P E DC+YY+RTG C FG+ CRFNHP +R V
Sbjct: 211 MWQLGLGSGGSGEDS-YPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAV 363
Score = 55.5 bits (132), Expect = 4e-09
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = +1
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP PGE +CSY+++TG C+FGATC+F+HP
Sbjct: 535 YPLRPGEKECSYFVKTGQCKFGATCKFDHP 624
Score = 51.6 bits (122), Expect = 6e-08
Identities = 18/32 (56%), Positives = 25/32 (77%)
Frame = +1
Query: 15 GPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
G YPE G+P C YY+RT C+FGA+C+++HP
Sbjct: 388 GEYPERVGQPVCQYYMRTRSCKFGASCKYHHP 483
>TC84075 similar to GP|3738297|gb|AAC63639.1| unknown protein {Arabidopsis
thaliana}, partial (17%)
Length = 615
Score = 61.6 bits (148), Expect = 6e-11
Identities = 27/52 (51%), Positives = 34/52 (64%)
Frame = +3
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
MW +SL +ES YPE G P+C+YY+RTG C +G CRFNHP +R V
Sbjct: 282 MWHLSLGSGGGVES--YPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAV 431
Score = 59.3 bits (142), Expect = 3e-10
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3
Query: 14 SGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
+G YPE GEP C YY++TG C+FGA+C+F+HP N
Sbjct: 450 TGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKN 554
>TC87644 similar to GP|10177307|dbj|BAB10568. contains similarity to zinc
finger protein~gene_id:MDC12.23 {Arabidopsis thaliana},
partial (36%)
Length = 1541
Score = 55.8 bits (133), Expect = 3e-09
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +1
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE PGEP+CS++I+TG C+F + C+F+HP NR
Sbjct: 931 FPERPGEPECSFFIKTGDCKFKSNCKFHHPKNR 1029
Score = 48.5 bits (114), Expect = 5e-07
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P GE +C YY+RTG C+FG+ CRFNHP
Sbjct: 532 PIRLGERECPYYMRTGSCKFGSNCRFNHP 618
Score = 42.4 bits (98), Expect = 4e-05
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = +1
Query: 6 LRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
L P + G P P + CS+Y R G+C+FG CRF+HP
Sbjct: 1039 LPPCNLSDKG-LPLRPDQSVCSHYSRYGICKFGPACRFDHP 1158
Score = 40.4 bits (93), Expect = 1e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
QM + E E+ G+ +C YY R+G C+FG C++NH
Sbjct: 355 QMQAVREKVREREEPEENAGQTECKYYQRSGGCKFGKACKYNH 483
>TC83740 similar to GP|6437560|gb|AAF08587.1| hypothetical protein
{Arabidopsis thaliana}, partial (10%)
Length = 435
Score = 55.8 bits (133), Expect = 3e-09
Identities = 21/36 (58%), Positives = 26/36 (71%)
Frame = +2
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
YP+ P E DC YY+RTG C +G+ CRFNHP +R V
Sbjct: 296 YPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAV 403
>AW682928 similar to GP|22507458|gb| Unknown (protein for MGC:30371) {Mus
musculus}, partial (13%)
Length = 641
Score = 54.3 bits (129), Expect = 1e-08
Identities = 21/39 (53%), Positives = 28/39 (70%)
Frame = +3
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
PSET+ PE PGEPDC ++++T C+FG C+FNHP
Sbjct: 348 PSETL-----PERPGEPDCPFFLKTQKCKFGTKCKFNHP 449
Score = 53.9 bits (128), Expect = 1e-08
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
PSE + PE P EP C++Y++TG C++GA C+F+HP
Sbjct: 456 PSENDDVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHP 572
>TC80929 similar to GP|10177307|dbj|BAB10568. contains similarity to zinc
finger protein~gene_id:MDC12.23 {Arabidopsis thaliana},
partial (28%)
Length = 1274
Score = 54.3 bits (129), Expect = 1e-08
Identities = 18/33 (54%), Positives = 28/33 (84%)
Frame = +3
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE PGEP+CS++++TG C+F + C+F+HP NR
Sbjct: 603 FPERPGEPECSFFLKTGDCKFKSHCKFHHPKNR 701
Score = 42.4 bits (98), Expect = 4e-05
Identities = 17/43 (39%), Positives = 26/43 (59%)
Frame = +3
Query: 6 LRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
L P + G P PG+ C++Y R G+C+FG C+++HP N
Sbjct: 711 LPPCNLSDKG-LPLRPGQNVCTHYSRYGICKFGPACKYDHPIN 836
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 19 EHPGEPDCSYYIRTGLCRFGATCRFNH 45
E + +C YY R+G C+FG C+F+H
Sbjct: 47 ERSSQTECKYYSRSGGCKFGKDCKFDH 127
Score = 35.4 bits (80), Expect = 0.005
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = +2
Query: 30 IRTGLCRFGATCRFNHP 46
+RTG C+FGA C+FNHP
Sbjct: 224 MRTGSCKFGANCKFNHP 274
>CB895149 similar to GP|6437560|gb|A hypothetical protein {Arabidopsis
thaliana}, partial (12%)
Length = 860
Score = 50.4 bits (119), Expect = 1e-07
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = +2
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
PE P + +C +Y++TG C+FG+TCR++HPP+
Sbjct: 470 PERPDQQECQHYMKTGDCKFGSTCRYHHPPD 562
Score = 27.7 bits (60), Expect = 0.96
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 22 GEPDCSYYIRTGLCRFGATC 41
G C++Y + G C+FG+ C
Sbjct: 799 GAQPCTHYTQRGFCKFGSAC 858
>TC79991 similar to GP|10177307|dbj|BAB10568. contains similarity to zinc
finger protein~gene_id:MDC12.23 {Arabidopsis thaliana},
partial (8%)
Length = 1023
Score = 49.7 bits (117), Expect = 2e-07
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = +1
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 50
+P P DCS+Y++TG C+FG C+FNHP RK
Sbjct: 856 FPLRPEAEDCSFYMKTGSCKFGFNCKFNHPIRRK 957
>TC85096 similar to GP|22507458|gb|AAH19429.1 Unknown (protein for
MGC:30371) {Mus musculus}, partial (21%)
Length = 834
Score = 48.9 bits (115), Expect = 4e-07
Identities = 14/33 (42%), Positives = 27/33 (81%)
Frame = +1
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
YP+ PG+ +C +Y+++G+C+FG C+++HP +R
Sbjct: 268 YPQRPGQIECDFYMKSGICKFGERCKYHHPIDR 366
Score = 48.9 bits (115), Expect = 4e-07
Identities = 17/29 (58%), Positives = 23/29 (78%)
Frame = +1
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P P E DC +Y++TG C+FGA+CR+NHP
Sbjct: 13 PVRPREVDCPFYMKTGSCKFGASCRYNHP 99
Score = 46.6 bits (109), Expect = 2e-06
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 6 LRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPP 47
L+ + + + P G C YY++T C+FGATC+F+HPP
Sbjct: 385 LQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPP 510
>TC82244 similar to GP|22507458|gb|AAH19429.1 Unknown (protein for
MGC:30371) {Mus musculus}, partial (13%)
Length = 847
Score = 48.9 bits (115), Expect = 4e-07
Identities = 16/30 (53%), Positives = 24/30 (79%)
Frame = +3
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP+ PGE DC++Y+ T C+FG +C+F+HP
Sbjct: 678 YPQRPGEKDCAHYMLTRTCKFGESCKFDHP 767
>AL365712 similar to GP|3738297|gb|A unknown protein {Arabidopsis
thaliana}, partial (5%)
Length = 520
Score = 45.4 bits (106), Expect = 4e-06
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 22 GEPDCSYYIRTGLCRFGATCRFNHP 46
GEP C YY+RTG C+FG CR++HP
Sbjct: 1 GEPVCQYYMRTGDCKFGLACRYHHP 75
>BM779407 similar to GP|6437560|gb|A hypothetical protein {Arabidopsis
thaliana}, partial (16%)
Length = 532
Score = 40.0 bits (92), Expect = 2e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PG C++Y + G+C+FG C+F+HP
Sbjct: 375 PLRPGAALCTHYAQRGICKFGPACKFDHP 461
Score = 26.2 bits (56), Expect = 2.8
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 9 SETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
S +P P +P+ YY + F + R++ PP+
Sbjct: 210 SRNQNEQSFPASPNQPEYHYYSKPEELPFAPSYRYHKPPD 329
>AL366906 weakly similar to PIR|T45743|T45 hypothetical protein F24M12.160 -
Arabidopsis thaliana, partial (2%)
Length = 486
Score = 28.9 bits (63), Expect = 0.43
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P G+ C +Y +G CR GA+C + HP
Sbjct: 258 PLPKGQRVCKFY-ESGYCRKGASCEYFHP 341
>TC92368 weakly similar to GP|19347974|gb|AAL86319.1 unknown protein
{Arabidopsis thaliana}, partial (63%)
Length = 999
Score = 28.5 bits (62), Expect = 0.56
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 22 GEPDCSYYIRTGLCRFGATCRFNH 45
G+ C ++ +G C++G TC F H
Sbjct: 81 GDKLCFKFVSSGSCQWGETCNFRH 152
>TC77987 weakly similar to GP|17979277|gb|AAL49864.1 unknown protein
{Arabidopsis thaliana}, partial (53%)
Length = 1338
Score = 28.1 bits (61), Expect = 0.74
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 26 CSYYIRTGLCRFGATCRFNH 45
CSYY + G C +G+ CR+ H
Sbjct: 180 CSYY-QKGSCAYGSRCRYKH 236
>TC93043 weakly similar to PIR|C84918|C84918 probable ATP-dependent RNA
helicase A [imported] - Arabidopsis thaliana, partial
(14%)
Length = 735
Score = 27.3 bits (59), Expect = 1.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 24 PDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
P C ++ CR G +C F+H +R V
Sbjct: 73 PQCKFFFSLQGCRNGGSCLFSHDVDRPAV 159
>BG646281 weakly similar to PIR|E84465|E844 hypothetical protein At2g05160
[imported] - Arabidopsis thaliana, partial (15%)
Length = 637
Score = 25.0 bits (53), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 28 YYIRTGLCRFGATCRFNH 45
+Y G CR G CR+ H
Sbjct: 398 HYFSKGYCRHGGNCRYFH 451
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.140 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,502,288
Number of Sequences: 36976
Number of extensions: 33430
Number of successful extensions: 180
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of query: 52
length of database: 9,014,727
effective HSP length: 28
effective length of query: 24
effective length of database: 7,979,399
effective search space: 191505576
effective search space used: 191505576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC148289.9