BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.12 - phase: 0
(214 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subun... 434 e-122
TC85331 homologue to GP|5738542|emb|CAB53034.1 photosystem I sub... 206 e-107
TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I sub... 337 3e-93
BG452001 homologue to GP|5738542|emb| photosystem I subunit XI p... 183 5e-47
BQ144745 homologue to GP|5738542|emb| photosystem I subunit XI p... 42 4e-08
BI271696 weakly similar to GP|21593120|gb putative splicing regu... 30 0.53
BQ144017 homologue to PIR|T06291|T062 extensin homolog T9E8.80 -... 28 2.0
BQ137338 similar to GP|6331377|dbj| KIAA1285 protein {Homo sapie... 28 3.4
TC88307 homologue to GP|6782273|emb|CAB70255.1 contains similari... 28 3.4
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr... 27 5.9
BQ144287 similar to PIR|G86292|G86 hypothetical protein AAF82153... 27 7.7
BG587171 SP|P56760|ATPH_ ATP synthase C chain (EC 3.6.3.14) (Lip... 27 7.7
>TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
precursor {Arabidopsis thaliana}, partial (85%)
Length = 826
Score = 434 bits (1116), Expect = e-122
Identities = 214/214 (100%), Positives = 214/214 (100%)
Frame = +1
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI 60
MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI
Sbjct: 46 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI 225
Query: 61 NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPL 120
NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPL
Sbjct: 226 NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPL 405
Query: 121 RNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTAD 180
RNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTAD
Sbjct: 406 RNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTAD 585
Query: 181 GWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
GWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK
Sbjct: 586 GWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 687
>TC85331 homologue to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
precursor {Arabidopsis thaliana}, partial (75%)
Length = 662
Score = 206 bits (524), Expect(2) = e-107
Identities = 102/112 (91%), Positives = 106/112 (94%)
Frame = +2
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI 60
MAAASPMASQLKSSFTRPL TPRGLCGSSPLHQ PS++Q N TVKAIQS+KPNYQ IQPI
Sbjct: 8 MAAASPMASQLKSSFTRPLGTPRGLCGSSPLHQSPSKKQSNSTVKAIQSKKPNYQGIQPI 187
Query: 61 NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVG 112
NGDP+IGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFL G
Sbjct: 188 NGDPYIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFL*G 343
Score = 198 bits (503), Expect(2) = e-107
Identities = 96/96 (100%), Positives = 96/96 (100%)
Frame = +1
Query: 119 PLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQT 178
PLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQT
Sbjct: 334 PLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQT 513
Query: 179 ADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
ADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK
Sbjct: 514 ADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 621
>TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
precursor {Arabidopsis thaliana}, partial (79%)
Length = 1068
Score = 337 bits (863), Expect = 3e-93
Identities = 166/175 (94%), Positives = 169/175 (95%)
Frame = +1
Query: 40 FNFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRG 99
FN+ + +Q PNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRG
Sbjct: 442 FNWKLPLLQ---PNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRG 612
Query: 100 IEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPS 159
IEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPS
Sbjct: 613 IEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPS 792
Query: 160 IAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
IAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK
Sbjct: 793 IAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 957
Score = 103 bits (258), Expect = 4e-23
Identities = 51/54 (94%), Positives = 53/54 (97%)
Frame = +3
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNY 54
MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEK ++
Sbjct: 15 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKVSH 176
>BG452001 homologue to GP|5738542|emb| photosystem I subunit XI precursor
{Arabidopsis thaliana}, partial (40%)
Length = 670
Score = 183 bits (464), Expect = 5e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +2
Query: 126 AGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTADGWSKF 185
AGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTADGWSKF
Sbjct: 2 AGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTADGWSKF 181
Query: 186 TGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
TGGFFFGGISGVTWAYFLLYVLDLPYFVK
Sbjct: 182 TGGFFFGGISGVTWAYFLLYVLDLPYFVK 268
>BQ144745 homologue to GP|5738542|emb| photosystem I subunit XI precursor
{Arabidopsis thaliana}, partial (14%)
Length = 645
Score = 42.0 bits (97), Expect(2) = 4e-08
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +3
Query: 181 GWSKFTGGFFFGGISGVT 198
GWSKFTGGFFFGG SGVT
Sbjct: 9 GWSKFTGGFFFGGXSGVT 62
Score = 31.6 bits (70), Expect(2) = 4e-08
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 201 YFLLYVLDLPYFVK 214
YFLLYV DLPYFVK
Sbjct: 71 YFLLYVXDLPYFVK 112
>BI271696 weakly similar to GP|21593120|gb putative splicing regulatory
protein {Arabidopsis thaliana}, partial (66%)
Length = 690
Score = 30.4 bits (67), Expect = 0.53
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Frame = -1
Query: 86 LPGYRTAVNPLLRGIEVGLAHGF------------FLVGPFVKAGPLRNTEYAGSAGSLA 133
+P +V P+LR +E +A F L+ PF K PL + S+ L
Sbjct: 447 VPILSLSVKPILRSMEATVAEAFEIK*WRSSKDLALLIAPFPKTKPLASMVLTASSAFLT 268
Query: 134 AAGLIVILSI 143
AAG+ L +
Sbjct: 267 AAGVCFWLGL 238
>BQ144017 homologue to PIR|T06291|T062 extensin homolog T9E8.80 - Arabidopsis
thaliana, partial (3%)
Length = 1126
Score = 28.5 bits (62), Expect = 2.0
Identities = 23/80 (28%), Positives = 32/80 (39%), Gaps = 3/80 (3%)
Frame = -3
Query: 120 LRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGR---KKQPDPL 176
L+NT+ + + V IC + S +G P A LT K++P P
Sbjct: 227 LKNTQNPATPCINLQSSKNVFFGIC-----IFSPTQGPPPTANRSQLTSNGPPKEEPPPT 63
Query: 177 QTADGWSKFTGGFFFGGISG 196
+GW K GG GG G
Sbjct: 62 PPREGWGKGGGGGGGGGGGG 3
>BQ137338 similar to GP|6331377|dbj| KIAA1285 protein {Homo sapiens}, partial
(1%)
Length = 1235
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 71 TPVTSSPLVAWYLSN--LPGYRTAVNPLLRGIEVG 103
TP+ +SP++ W++S+ + G +T P L+G + G
Sbjct: 9 TPLITSPIIIWFMSSPVVWGRQTGDFPSLKGTKTG 113
>TC88307 homologue to GP|6782273|emb|CAB70255.1 contains similarity to Pfam
domain: PF01748 (Domain of unknown function)
Score=122.0 E-value=3., partial (4%)
Length = 1681
Score = 27.7 bits (60), Expect = 3.4
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Frame = +2
Query: 6 PMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQ---------V 56
P +SQ + T LVT G + P H++PS + + +E+P Q
Sbjct: 158 PTSSQKEIGQT--LVTEHGFVENVPRHEIPSIAIIPTNSEELMNEQPMEQQRPLGETDAT 331
Query: 57 IQPINGDPFIGSLETPVTSSPL 78
++P+ + F+GS +S L
Sbjct: 332 VKPLQENTFVGSTSEKNVASTL 397
>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
{Arabidopsis thaliana}, partial (37%)
Length = 1366
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 55 QVIQPINGDPFIGSLETPVTSSPLVAWYLS 84
Q+ P PF L++P+TS+P WY S
Sbjct: 223 QISSPSATTPFHRPLKSPMTSTPS*GWYQS 312
>BQ144287 similar to PIR|G86292|G86 hypothetical protein AAF82153.1
[imported] - Arabidopsis thaliana, partial (4%)
Length = 1176
Score = 26.6 bits (57), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +2
Query: 168 GRKKQPDPLQTADGWSKFTGG 188
GRKK P + D W+ F GG
Sbjct: 563 GRKKTPPKVSVKDAWAIFIGG 625
>BG587171 SP|P56760|ATPH_ ATP synthase C chain (EC 3.6.3.14) (Lipid-binding
protein) (Subunit III). [Mouse-ear cress], partial (96%)
Length = 657
Score = 26.6 bits (57), Expect = 7.7
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Frame = -2
Query: 93 VNPLLRGIEV---GLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLI---VILSI--- 143
+NPL+ V GLA G +GP V G G A A G I ++LS+
Sbjct: 236 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 57
Query: 144 -CLTIYGV 150
LTIYG+
Sbjct: 56 EALTIYGL 33
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,540,073
Number of Sequences: 36976
Number of extensions: 90045
Number of successful extensions: 458
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of query: 214
length of database: 9,014,727
effective HSP length: 92
effective length of query: 122
effective length of database: 5,612,935
effective search space: 684778070
effective search space used: 684778070
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148289.12