TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148241.10 - phase: 1 /pseudo
         (611 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77054 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 M...    47  8e-06
AW329864                                                               39  0.004
TC93825 similar to GP|23498747|emb|CAD50817. hypothetical protei...    39  0.004
TC90625 weakly similar to GP|10177856|dbj|BAB11208. phloem-speci...    34  0.14
TC80319 similar to GP|20259261|gb|AAM14366.1 putative HhoA prote...    33  0.42
TC80479 homologue to PIR|S12720|HHPM17 heat shock protein 17.7 -...    31  1.2
BF647413 similar to GP|13877625|gb Unknown protein {Arabidopsis ...    30  2.7

>TC77054 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 Myb-like
           DNA-binding domain.  EST gb|Z18152 comes from this
           gene., partial (11%)
          Length = 643

 Score = 47.0 bits (110), Expect(2) = 8e-06
 Identities = 25/27 (92%), Positives = 26/27 (95%)
 Frame = +1

Query: 13  GR*YSKR*SYNFFIRT*TCS*ESKN*R 39
           GR*YSKR*SYNFFIRT*T S*ESKN*+
Sbjct: 289 GR*YSKR*SYNFFIRT*TSS*ESKN*K 369



 Score = 20.8 bits (42), Expect(2) = 8e-06
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 1   EVSKN*FYFQE 11
           E SKN FYFQE
Sbjct: 257 EDSKNRFYFQE 289


>AW329864 
          Length = 401

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/27 (77%), Positives = 22/27 (80%)
 Frame = +2

Query: 1   EVSKN*FYFQEEGR*YSKR*SYNFFIR 27
           E SKN FYFQ+EG *Y KR*S NFFIR
Sbjct: 200 EDSKNRFYFQKEGC*Y*KR*SCNFFIR 280


>TC93825 similar to GP|23498747|emb|CAD50817. hypothetical protein
           {Plasmodium falciparum 3D7}, partial (0%)
          Length = 948

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/27 (77%), Positives = 22/27 (80%)
 Frame = -1

Query: 1   EVSKN*FYFQEEGR*YSKR*SYNFFIR 27
           E SKN FYFQ+EG *Y KR*S NFFIR
Sbjct: 561 EDSKNRFYFQKEGC*Y*KR*SCNFFIR 481


>TC90625 weakly similar to GP|10177856|dbj|BAB11208. phloem-specific
           lectin-like protein {Arabidopsis thaliana}, partial (9%)
          Length = 892

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 428 KEIENLLETGEIVTGKGKNQVGTVKR 453
           +E+E LLE  EI++GKG  Q+G +KR
Sbjct: 69  EEVEYLLEIDEIISGKGAKQIGALKR 146


>TC80319 similar to GP|20259261|gb|AAM14366.1 putative HhoA protease
           precursor {Arabidopsis thaliana}, partial (47%)
          Length = 1195

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 1/53 (1%)
 Frame = -2

Query: 73  STKTNGCNTKSLSKMGSLSIKLRKLSH-VRYRESTKAISTQLV*LVFFVARIF 124
           S+  + C ++S S+ G   +KLRKLSH    R   K ++ +LV +   V R+F
Sbjct: 297 SSSCSCCESESESESGCAELKLRKLSHEATTRLELKTMALRLVAVTVVVGRVF 139


>TC80479 homologue to PIR|S12720|HHPM17 heat shock protein 17.7 - garden
           pea, partial (96%)
          Length = 764

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = +2

Query: 52  SGRH*NFFRKGSRKTYSNLEISTKTNGCNTKSLSKMGSL 90
           +G H    R+ S++T +NL    K+NGCNT    ++  L
Sbjct: 179 NGPHRRHNREESKRTNTNLRSRRKSNGCNTSRRERVSKL 295


>BF647413 similar to GP|13877625|gb Unknown protein {Arabidopsis thaliana},
           partial (41%)
          Length = 667

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +1

Query: 402 FEKLIFVVNVVGSSTKRHDELQAAQSKEIENLLETG------EIVTGKGKNQVGTVKRAG 455
           F  LIF+ +   ++T + +  +    KEI N +         +  +GKGK  V       
Sbjct: 115 FTSLIFISHFASAATLKLNTQEVKALKEIGNKIGKKDWDFGVDPCSGKGKWNV------S 276

Query: 456 DTRWGSHFNSICSLISMYGATCPVLKIIAKDAKKIAQRADADSSYNHLKSFD 507
           D+R G     IC+    + ++C V+ I  K        +   S   HLK  D
Sbjct: 277 DSRKGFESAVICNCSFNHNSSCHVVSIFLKAQNLSGTLSPEFSKLPHLKILD 432


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.359    0.157    0.535 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,745,859
Number of Sequences: 36976
Number of extensions: 235705
Number of successful extensions: 2490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 1205
length of query: 611
length of database: 9,014,727
effective HSP length: 102
effective length of query: 509
effective length of database: 5,243,175
effective search space: 2668776075
effective search space used: 2668776075
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)