TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148240.10 - phase: 0 /pseudo
         (1012 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    47  1e-09
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...    42  0.002
TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidops...    33  0.42
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...    32  0.94

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 46.6 bits (109), Expect(2) = 1e-09
 Identities = 32/99 (32%), Positives = 48/99 (48%)
 Frame = -3

Query: 603 ETKPDLLLKVTVNKKALITLKHLLQLQDWKQSGYFYPMQLTMA*YCIKWMSKVLFLMVSL 662
           E  P    K T+ KK    ++    L +WK   +   +  +    C KWM +V  LM   
Sbjct: 417 EINPSWWCKDTIKKKE*TMMRLFHLLPEWKLLEF**LLLHSWGSSCTKWM*RVHLLMEIS 238

Query: 663 KKKYMSNNLLGLRILSILTMFINLRNHYMA*NKLPELGM 701
           K++ +S+NLL L++     M  +   HYM *+KL E GM
Sbjct: 237 KRRCLSSNLLDLKMQRYQIMCSD*IRHYMV*SKLQEHGM 121



 Score = 35.4 bits (80), Expect(2) = 1e-09
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = -1

Query: 542 LSLKLLKKLSQMMVGY*PCKKN*ISFREMMCGI*YPNLFRRTLLEQNGYSETS 594
           LS ++LKK   M  G   CKKN IS +E+  G  + +L  +  LE  G+ ETS
Sbjct: 590 LSPRMLKKHCVMQTGSILCKKNSISLKEVRYGTWFLDLKAKQ*LELGGFLETS 432


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
           partial (9%)
          Length = 675

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 43/129 (33%), Positives = 62/129 (47%)
 Frame = +2

Query: 573 GI*YPNLFRRTLLEQNGYSETS*MKKEK*PETKPDLLLKVTVNKKALITLKHLLQLQDWK 632
           GI +  L  R LL  +G+ E    + +     KPD  L+V+V    +ITLK  L   +  
Sbjct: 149 GILFLFLHTRKLLAASGFIELKKTQMDLLTNLKPD*WLRVSVKHLDVITLKLSLL**NLS 328

Query: 633 QSGYFYPMQLTMA*YCIKWMSKVLFLMVSLKKKYMSNNLLGLRILSILTMFINLRNHYMA 692
            SG F P+   +     K +S + F MV  K+K +  NL  L++L I     +  NH MA
Sbjct: 329 LSGSFSPLLSLINGKFNKLISTMPF*MVFFKRKCICLNLRDLKLL-INLWCAS*TNHSMA 505

Query: 693 *NKLPELGM 701
           *+K    GM
Sbjct: 506 *SKHHVHGM 532


>TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidopsis
           thaliana}, partial (6%)
          Length = 890

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 21/96 (21%), Positives = 52/96 (53%), Gaps = 11/96 (11%)
 Frame = +2

Query: 419 LMIESLEIKLQSKVKVMQVQL-ILKMHQNLINLLILKSIQKLNLVQK----------LKS 467
           + I+ +E+K++ KVKV+ + L +L +H+  + L ++K+ + +  ++K          L  
Sbjct: 401 MRIKMMEVKVKVKVKVLSLNLRVLLLHRRRLVLTVMKTTKTMQKMKKKGR*VMMRRWLLG 580

Query: 468 LQKLSLIQKQKLVQ*NRMKMLLRMFKITLSRLFSQN 503
           ++ + ++   K++ *+++   +R   +  S LF  N
Sbjct: 581 VRLMVILMMMKML**DQLSQRMRFSLVYSSVLFCSN 688


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
           thaliana}, partial (14%)
          Length = 778

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 16/220 (7%)
 Frame = +1

Query: 585 LEQNGYSETS*MKKEK*PETKPDLLLKVTVNKKALITLKHLLQLQDWKQSGY---FYPMQ 641
           L+ NG  + S*M+ E+    K DL  + T+N   L T K L Q  D  +S +     P  
Sbjct: 166 LDSNGSLKQS*MRMERLRSIKLDLWPRGTLNNMVLTTPKFLHQWLDGTRSEW*LLLLPKL 345

Query: 642 LTMA*YCIKWMSKVLFLMVSLKKKYMSNNLLGL-------RILSILTMFINLRN-HYMA* 693
             M   C+    K   L+  ++      +  GL         L  L M +N  + H  A 
Sbjct: 346 KGME--CVSARCKKRILVWRIE*GSFC*STTGLCEEG**AEGLKGLCMALNKHHEHGTAA 519

Query: 694 NKLPELGMID*VIS*LKMILKEDKLTQHSSERHL-----RRTF*LCKYMLMI*YLVLLMH 748
           +KL              +  ++D  + H +   L        F L  +MLMI*YL ++M 
Sbjct: 520 SKL--------------ISPRKDSRSVHMNTPCL*S*VKEVKFSLLVFMLMI*YLSVMMR 657

Query: 749 LFAKNSLS*CRMNLK*V*WEN*SSFLEFKSTKVKKEYMFI 788
           +  K+  S  + NL          FLE K  +++KE++F+
Sbjct: 658 ICLKSLKSP*KRNLTCQTLARCIIFLELK*LRMRKEFIFV 777


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.359    0.160    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,157,925
Number of Sequences: 36976
Number of extensions: 378717
Number of successful extensions: 4129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 2765
Number of HSP's gapped (non-prelim): 1617
length of query: 1012
length of database: 9,014,727
effective HSP length: 106
effective length of query: 906
effective length of database: 5,095,271
effective search space: 4616315526
effective search space used: 4616315526
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)