BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148236.5 - phase: 0 /pseudo
(478 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG588078 similar to GP|4314359|gb| unknown protein {Arabidopsis ... 244 7e-65
BE998695 similar to GP|16323222|gb AT4g24430/T22A6_260 {Arabidop... 235 3e-62
AL377340 similar to GP|2160178|gb| F21M12.27 gene product {Arabi... 211 5e-55
BE124386 weakly similar to GP|16323222|gb AT4g24430/T22A6_260 {A... 171 4e-43
AW690576 similar to GP|16323222|gb| AT4g24430/T22A6_260 {Arabido... 79 4e-15
BF641076 similar to GP|2160180|gb|A F21M12.30 gene product {Arab... 63 3e-10
BG588190 similar to GP|2160180|gb| F21M12.30 gene product {Arabi... 54 1e-07
AW691456 45 5e-05
AW773936 32 0.70
TC80958 similar to GP|16612320|gb|AAL27518.1 AT3g50560/T20E23_16... 29 3.5
BF649564 weakly similar to GP|21539507|gb unknown protein {Arabi... 29 4.5
TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20... 28 5.9
TC87292 similar to GP|21592994|gb|AAM64943.1 unknown {Arabidopsi... 28 7.7
TC88712 weakly similar to GP|9294466|dbj|BAB02685.1 gb|AAD14522.... 28 7.7
>BG588078 similar to GP|4314359|gb| unknown protein {Arabidopsis thaliana},
partial (20%)
Length = 623
Score = 244 bits (622), Expect = 7e-65
Identities = 118/207 (57%), Positives = 143/207 (69%), Gaps = 1/207 (0%)
Frame = +2
Query: 137 VRLVNPVEPEFKGEVDDKYEYACESRSNQVHGWISIDSSSDSTGCWLITPSYEFRSAGPL 196
V L NP+ P+F+ EVDDKY+Y+ E+R N VHGWI DS G W+ITPS EFR+ GP+
Sbjct: 2 VLLTNPINPQFRLEVDDKYQYSWENRDNTVHGWIGFDSDPP-VGFWMITPSNEFRNGGPI 178
Query: 197 KQYLGSHLGPTMLSVFHSTHYSGADLIMKFGENEPWKKVFGPIFIYLNSNSDGFSPIKLW 256
KQ L SH+GP LS+F STHY+G ++ M F E E +KKVFGP+F+YLN+ S LW
Sbjct: 179 KQDLTSHVGPIALSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNTASSENDNATLW 358
Query: 257 EDAKQQMVNEVESWPYTFPASEDFLSSAQRGKFEGRLLVRDRYIRDA-FVPVSGAYVGLA 315
DA QQ+ EV+SWPY FP S+D+ QRG GRLLV+D Y + + AYVGLA
Sbjct: 359 SDAVQQLSKEVQSWPYDFPQSQDYFPPNQRGAVFGRLLVQDWYFEGGRYQYANNAYVGLA 538
Query: 316 APGDVGSWQREYKGYQFWTITDDKGYF 342
PGD GSWQRE KGYQFWT TD KGYF
Sbjct: 539 LPGDAGSWQRESKGYQFWTQTDAKGYF 619
>BE998695 similar to GP|16323222|gb AT4g24430/T22A6_260 {Arabidopsis
thaliana}, partial (31%)
Length = 583
Score = 235 bits (599), Expect = 3e-62
Identities = 113/194 (58%), Positives = 142/194 (72%), Gaps = 3/194 (1%)
Frame = +2
Query: 166 VHGWISIDSSS-DSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADLIM 224
VHGWIS +S + +TG W+I PS EFRS G +KQ L SH+GP L++F S HY+G D+++
Sbjct: 2 VHGWISAESETIPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVL 181
Query: 225 KFGENEPWKKVFGPIFIYLNS--NSDGFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLS 282
K NEPWKKVFGP F+YLN+ + D +LWEDAK QM EV+SWPY FPAS+DF
Sbjct: 182 KLQPNEPWKKVFGPTFVYLNNLLDHDEDPLAQLWEDAKFQMNKEVQSWPYDFPASDDFQK 361
Query: 283 SAQRGKFEGRLLVRDRYIRDAFVPVSGAYVGLAAPGDVGSWQREYKGYQFWTITDDKGYF 342
++QRG G LLVRDR + D + GAYVGLA PGD GSWQRE KGYQFW+ ++++GYF
Sbjct: 362 ASQRGSVCGTLLVRDRCVSDKDIIAKGAYVGLAPPGDAGSWQRECKGYQFWSKSNEEGYF 541
Query: 343 SIINVLPGDYNLYS 356
SI N+ GDYNLY+
Sbjct: 542 SINNIRSGDYNLYA 583
>AL377340 similar to GP|2160178|gb| F21M12.27 gene product {Arabidopsis
thaliana}, partial (22%)
Length = 453
Score = 211 bits (537), Expect = 5e-55
Identities = 99/147 (67%), Positives = 117/147 (79%)
Frame = +1
Query: 103 KFNYMAIADNRQRFMPLPDDRLPPRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYACESR 162
+F+YMA AD RQR MPLPDDR+ PRGQ LAYPEAV LVNP+EPE KGEVDDKY+Y+C+++
Sbjct: 19 RFHYMARADKRQRNMPLPDDRVAPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNK 198
Query: 163 SNQVHGWISIDSSSDSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADL 222
+QVHGWI +D + G WLITPS EFRS GP+KQ L SH+GPT L+VF S HYSG DL
Sbjct: 199 DSQVHGWICMD---PAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDL 369
Query: 223 IMKFGENEPWKKVFGPIFIYLNSNSDG 249
+ KF E WKKVFGP+FIY+NS DG
Sbjct: 370 VPKFKAGEAWKKVFGPVFIYVNSPYDG 450
>BE124386 weakly similar to GP|16323222|gb AT4g24430/T22A6_260 {Arabidopsis
thaliana}, partial (37%)
Length = 634
Score = 171 bits (434), Expect = 4e-43
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = +2
Query: 391 HGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYT 450
HGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYT
Sbjct: 5 HGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYT 184
Query: 451 VGISDYKKDWFFAQVTR 467
VGISDYKKDWFFAQVTR
Sbjct: 185 VGISDYKKDWFFAQVTR 235
>AW690576 similar to GP|16323222|gb| AT4g24430/T22A6_260 {Arabidopsis
thaliana}, partial (7%)
Length = 413
Score = 79.0 bits (193), Expect = 4e-15
Identities = 33/39 (84%), Positives = 36/39 (91%)
Frame = +2
Query: 390 RHGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDR 428
R GPTLWEIGIPDRSAAEFYVPDPNP Y+N+LYVNH D+
Sbjct: 2 RDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDK 118
>BF641076 similar to GP|2160180|gb|A F21M12.30 gene product {Arabidopsis
thaliana}, partial (8%)
Length = 613
Score = 62.8 bits (151), Expect = 3e-10
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = +1
Query: 1 VVIDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRG 41
VV+DN IVQV +SNP+G VTGI+YNG+DNLLE+ N E++RG
Sbjct: 310 VVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRG 432
>BG588190 similar to GP|2160180|gb| F21M12.30 gene product {Arabidopsis
thaliana}, partial (15%)
Length = 547
Score = 53.9 bits (128), Expect = 1e-07
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = +2
Query: 434 LWERYADLYPNEDLVYTVGISDYKKDWFFAQVTR 467
L + Y +LYP+ +LVYT+G+SDY+KDWF+AQV R
Sbjct: 2 LLDIYTELYPDANLVYTIGVSDYRKDWFYAQVPR 103
>AW691456
Length = 660
Score = 45.4 bits (106), Expect = 5e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 1 VVIDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRG 41
VVI N I+ + ++NP G V GI Y G++N+LE N DRG
Sbjct: 308 VVISNGIMSLTLANPGGYVLGISYAGMENVLEAGNEADDRG 430
>AW773936
Length = 656
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 173 DSSSDSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHY 217
D+S+ TG +++T ++ S PLK + S L ++ FHS H+
Sbjct: 495 DNSALDTGIFMLTSTFTILS*TPLKNAIKSRLKRENINKFHSLHF 361
>TC80958 similar to GP|16612320|gb|AAL27518.1 AT3g50560/T20E23_160
{Arabidopsis thaliana}, partial (81%)
Length = 1411
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +2
Query: 358 VNGFIGDYQCNNIINITSGSEINVGELVYEPPRHGPTLWEIGIPDRSA 405
++GFIG + ++ +S + GE V +P T W I + DR+A
Sbjct: 893 IDGFIGPPRGSSATTTSSRGGGSGGESVMDPDALAQTYWHIHVQDRNA 1036
>BF649564 weakly similar to GP|21539507|gb unknown protein {Arabidopsis
thaliana}, partial (44%)
Length = 647
Score = 28.9 bits (63), Expect = 4.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 227 GENEPWKKVFGPIFIYLNSNSDGFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSAQR 286
G+ +K P + + G+ PIK + N +ESWP T SE F + QR
Sbjct: 316 GDPNQQEKCIPP*HLERRA*EHGYKPIKPYRQQSVDYKNAMESWPVT--ESETF*NKEQR 143
>TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20.13
[imported] - Arabidopsis thaliana, partial (38%)
Length = 1068
Score = 28.5 bits (62), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 368 NNIINITSGSEINVGELVYEPPRHG 392
NNI+++T G IN+ ++V+EP G
Sbjct: 538 NNILHLTQGHVINLRQMVHEPTGSG 464
>TC87292 similar to GP|21592994|gb|AAM64943.1 unknown {Arabidopsis
thaliana}, partial (72%)
Length = 1284
Score = 28.1 bits (61), Expect = 7.7
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -1
Query: 133 YPEAVRLVNPVEPEFKGEVDDKYEYACE 160
Y E+VR+ N E E + V+DK ++ CE
Sbjct: 234 YEESVRIPNISELEARKRVEDKVDFLCE 151
>TC88712 weakly similar to GP|9294466|dbj|BAB02685.1
gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein
{Arabidopsis thaliana}, partial (48%)
Length = 746
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = -2
Query: 249 GFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSAQR 286
G+ PIK + N +ESWP T SE F + QR
Sbjct: 247 GYKPIKPYRQQSVDYKNAMESWPVT--ESETF*NKEQR 140
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.144 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,873,970
Number of Sequences: 36976
Number of extensions: 240998
Number of successful extensions: 1249
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of query: 478
length of database: 9,014,727
effective HSP length: 100
effective length of query: 378
effective length of database: 5,317,127
effective search space: 2009874006
effective search space used: 2009874006
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148236.5