BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148236.4 - phase: 0
(279 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine ma... 394 e-110
TC90977 similar to GP|10178227|dbj|BAB11607. ZW10-like protein {... 352 9e-98
TC81912 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine ma... 306 6e-84
BI266576 similar to GP|21700765|gb| unknown {Glycine max}, parti... 89 2e-18
BI308477 similar to GP|11994647|dbj UTP-glucose glucosyltransfer... 29 1.7
TC88093 homologue to PIR|D84431|D84431 probable endosomal protei... 29 2.3
TC84200 weakly similar to GP|23321153|gb|AAN23086.1 putative rp3... 29 2.3
AL369948 similar to GP|14587221|db contains ESTs AU108104(C12321... 28 3.9
TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeot... 28 3.9
TC79775 similar to GP|18175886|gb|AAL59945.1 unknown protein {Ar... 27 8.7
>TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine max}, partial
(93%)
Length = 1143
Score = 394 bits (1012), Expect = e-110
Identities = 189/253 (74%), Positives = 220/253 (86%)
Frame = +3
Query: 11 QTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRIEL 70
+T VRHAQG HNVEG+KN DAYLSYD FDA+LTPLGW+QV+NL++HVKA GLSK+IEL
Sbjct: 105 KTIHLVRHAQGVHNVEGEKNHDAYLSYDFFDANLTPLGWQQVENLQKHVKAIGLSKKIEL 284
Query: 71 VIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVVNSSRHAISSLNSPPFVAVELCRE 130
V+VSPLLRTMQTAVGVFGGEA+TDGV+ PPLM ENV +S A+SSLN PPFVAVELCRE
Sbjct: 285 VVVSPLLRTMQTAVGVFGGEANTDGVNKPPLMIENVGHSDHPAVSSLNCPPFVAVELCRE 464
Query: 131 HLGVHPCDKRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLWT 190
+G+HPCDKRR +SEY++MFP IDFSLIE D+D WKP+ REK EEV RGLKFLEWL T
Sbjct: 465 QMGLHPCDKRRTVSEYRHMFPGIDFSLIETDDDTWWKPE-REKKEEVTGRGLKFLEWLCT 641
Query: 191 RKEKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDESS 250
RKEKEIAVV+HS FLF+TLSAFGNDCH N+K+E+C HFANCELRS+VI+D+ IGS+ S+
Sbjct: 642 RKEKEIAVVTHSSFLFNTLSAFGNDCHPNIKTEMCAHFANCELRSMVIVDKCMIGSNNST 821
Query: 251 TNFPGKIPQGLDL 263
TN+PGKIP G DL
Sbjct: 822 TNYPGKIPHGPDL 860
>TC90977 similar to GP|10178227|dbj|BAB11607. ZW10-like protein {Arabidopsis
thaliana}, partial (84%)
Length = 779
Score = 352 bits (903), Expect = 9e-98
Identities = 169/249 (67%), Positives = 198/249 (78%), Gaps = 1/249 (0%)
Frame = +3
Query: 29 KNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRIELVIVSPLLRTMQTAVGVFG 88
KN AYL+ D FDA LTPLGW+QVDNLR+HV +SGL +I+LVI SPL+RT+QTAVGVFG
Sbjct: 3 KNYKAYLNPDYFDAHLTPLGWEQVDNLRKHVHSSGLINKIDLVIASPLMRTLQTAVGVFG 182
Query: 89 GEAHTDG-VDAPPLMNENVVNSSRHAISSLNSPPFVAVELCREHLGVHPCDKRRGISEYQ 147
GE +TD D PLM N NS AISS N PP VA ELCREHLGVHPCDKRR +SEYQ
Sbjct: 183 GEGYTDDKTDVLPLMVANAGNSFHGAISSHNCPPIVAGELCREHLGVHPCDKRRSVSEYQ 362
Query: 148 NMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVSHSGFLFH 207
+FPA+DFSLI+ DED+ WK ++RE EE+AARG++FL WLWTRKEKEIA+V+HSGFLFH
Sbjct: 363 FLFPAVDFSLIDSDEDVWWKDNVRETKEELAARGVEFLNWLWTRKEKEIAIVTHSGFLFH 542
Query: 208 TLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDESSTNFPGKIPQGLDLPSDV 267
TL+ FGNDCH VK EI HFANCELRS+V++DR IGS+ S+TN+PGKIP GLD PSD
Sbjct: 543 TLTTFGNDCHPLVKKEISKHFANCELRSMVLVDRNMIGSEASTTNYPGKIPSGLDKPSDA 722
Query: 268 ADEKLSGSG 276
DE + G
Sbjct: 723 VDENVEKQG 749
>TC81912 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine max}, partial
(48%)
Length = 758
Score = 306 bits (784), Expect = 6e-84
Identities = 146/150 (97%), Positives = 148/150 (98%)
Frame = +2
Query: 130 EHLGVHPCDKRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLW 189
EHLGVHPCD RRGISEY NMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLW
Sbjct: 2 EHLGVHPCDNRRGISEYHNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLW 181
Query: 190 TRKEKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDES 249
TRK+KEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDES
Sbjct: 182 TRKQKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDES 361
Query: 250 STNFPGKIPQGLDLPSDVADEKLSGSGPSK 279
STNFPGKIPQGLDLPSDVA+EKLSGSGPSK
Sbjct: 362 STNFPGKIPQGLDLPSDVAEEKLSGSGPSK 451
>BI266576 similar to GP|21700765|gb| unknown {Glycine max}, partial (18%)
Length = 427
Score = 89.0 bits (219), Expect = 2e-18
Identities = 41/46 (89%), Positives = 42/46 (91%)
Frame = +1
Query: 11 QTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLR 56
+T VRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQV NLR
Sbjct: 289 KTLHLVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVXNLR 426
>BI308477 similar to GP|11994647|dbj UTP-glucose glucosyltransferase
{Arabidopsis thaliana}, partial (3%)
Length = 805
Score = 29.3 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 160 RDEDIL-WKPDIREKNEEVAARGLKFLEWLWTRKEKEIAV 198
RD + L WK +++ + + R L L W WTRK K+ +
Sbjct: 500 RDSNQLNWKMNLKFRLSKTCFRNLFCLTWFWTRKLKKTVI 619
>TC88093 homologue to PIR|D84431|D84431 probable endosomal protein
[imported] - Arabidopsis thaliana, partial (55%)
Length = 1220
Score = 28.9 bits (63), Expect = 2.3
Identities = 20/71 (28%), Positives = 27/71 (37%), Gaps = 3/71 (4%)
Frame = +1
Query: 187 WLWTRKEKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVII---DRGT 243
W+W V H G + LS ICTHF NC L +I+ R
Sbjct: 97 WIWYPTVYPYGVHIHIGTCWCILSXQPRGSIHCTCCYICTHFRNCWLYCYLILLSTGRNK 276
Query: 244 IGSDESSTNFP 254
+GS+ + P
Sbjct: 277 LGSESTIDRMP 309
>TC84200 weakly similar to GP|23321153|gb|AAN23086.1 putative rp3 protein
{Zea mays}, partial (3%)
Length = 706
Score = 28.9 bits (63), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 164 ILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVSHSG 203
+ W+ D R++ ++ R L FL W ++ + ++ H+G
Sbjct: 359 LCWRSDARKEPGKIGIRYLTFLNWS*LKQNFTLGIIIHTG 478
>AL369948 similar to GP|14587221|db contains ESTs AU108104(C12321)
C26435(C12321)~similar to Arabidopsis thaliana
chromosome 3 F24P17., partial (5%)
Length = 510
Score = 28.1 bits (61), Expect = 3.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +3
Query: 164 ILWKPDIREKNEEVAA----RGLKFLEWLWTRKEKEIAVVSHS 202
+LW I E +A RGL FLEW + E E+A ++H+
Sbjct: 33 VLWWICIEEGVNCIAVQI*MRGL*FLEWTYALLEIELAAITHN 161
>TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeotic protein 29
{Solanum tuberosum}, partial (58%)
Length = 2740
Score = 28.1 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 184 FLEWLWTRKEKEIAVVSHSGFLFHTLS 210
FL W+ T EI++VSH TLS
Sbjct: 2018 FLHWILTETSNEISLVSHETITISTLS 1938
>TC79775 similar to GP|18175886|gb|AAL59945.1 unknown protein {Arabidopsis
thaliana}, partial (82%)
Length = 1147
Score = 26.9 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -3
Query: 70 LVIVSPLLRTMQTAVGVFGGEAHTDG 95
L +VSPLLR + +++G+ GG+ G
Sbjct: 839 LSLVSPLLRLLASSIGIGGGKVSPAG 762
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,828,062
Number of Sequences: 36976
Number of extensions: 142622
Number of successful extensions: 609
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 279
length of database: 9,014,727
effective HSP length: 95
effective length of query: 184
effective length of database: 5,502,007
effective search space: 1012369288
effective search space used: 1012369288
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC148236.4