TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148154.9 + phase: 0 /pseudo
         (481 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...   103  1e-22
TC92152 weakly similar to PIR|G86266|G86266 hypothetical protein...    31  1.2

>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (2%)
          Length = 592

 Score =  103 bits (257), Expect = 1e-22
 Identities = 53/64 (82%), Positives = 53/64 (82%)
 Frame = -1

Query: 13  EPNG*CSCYSIFHVPSKPLE*RAINQSTTPRKTFACVCYWGCDRSGW*KCG*L*TLVLRH 72
           EPNG*CS YSI HV SKPLE* A NQS TP KTF CVCYW CDRS  *KCG*L*TLVLRH
Sbjct: 196 EPNG*CSGYSILHVSSKPLE*CANNQSATP*KTFTCVCYWECDRSDR*KCG*L*TLVLRH 17

Query: 73  QTVL 76
           QTVL
Sbjct: 16  QTVL 5


>TC92152 weakly similar to PIR|G86266|G86266 hypothetical protein AAD31075.1
           [imported] - Arabidopsis thaliana, partial (5%)
          Length = 645

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -2

Query: 224 LTTSPSGLKQHLIPM*PSKW*LSSSKTTSSVDMVFPARLLPTMVPT*TIMW----CKLFV 279
           LTTSP  L+         KW LS+++ + S    F  R +     +    W    C LFV
Sbjct: 224 LTTSPQSLQFLSFSTSARKWFLSATRRSRSF-FTFWLRFISISESSCISRWSDFSCCLFV 48

Query: 280 KNSKLSIITLLPIDL 294
            +S LS   L+P DL
Sbjct: 47  SSSFLSFSNLIPSDL 3


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.364    0.161    0.620 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,665,810
Number of Sequences: 36976
Number of extensions: 233178
Number of successful extensions: 3114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 1876
Number of HSP's gapped (non-prelim): 1387
length of query: 481
length of database: 9,014,727
effective HSP length: 100
effective length of query: 381
effective length of database: 5,317,127
effective search space: 2025825387
effective search space used: 2025825387
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 60 (27.7 bits)