BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147964.4 + phase: 0 /pseudo
(276 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85069 similar to GP|1354468|gb|AAD12774.1| U1 snRNP 70K trunca... 333 3e-92
BF646398 similar to GP|14028993|gb Putative U1 small nuclear rib... 262 1e-79
BG450526 similar to GP|18252907|gb putative U1 small nuclear rib... 109 1e-24
TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Ar... 62 2e-10
TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei... 62 2e-10
BG580560 similar to GP|14028993|gb| Putative U1 small nuclear ri... 61 4e-10
TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garde... 57 6e-09
TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown prot... 55 2e-08
TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-... 55 2e-08
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 55 4e-08
TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding pr... 55 4e-08
TC79604 similar to GP|18175762|gb|AAL59923.1 unknown protein {Ar... 54 5e-08
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 54 7e-08
TC87506 similar to GP|9843655|emb|CAC03601.1 SC35-like splicing ... 54 7e-08
TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava ... 54 9e-08
AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding pr... 52 3e-07
TC77695 similar to PIR|T09704|T09704 probable arginine/serine-ri... 51 4e-07
CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein c... 51 6e-07
AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich prot... 51 6e-07
TC80464 weakly similar to GP|13548328|emb|CAC35875. putative pro... 50 1e-06
>TC85069 similar to GP|1354468|gb|AAD12774.1| U1 snRNP 70K truncated protein
{Arabidopsis thaliana}, partial (79%)
Length = 675
Score = 333 bits (855), Expect = 3e-92
Identities = 164/167 (98%), Positives = 166/167 (99%)
Frame = +2
Query: 1 MEDPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPE 60
MEDPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPE
Sbjct: 107 MEDPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPE 286
Query: 61 KRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEK 120
KRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEK
Sbjct: 287 KRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEK 466
Query: 121 YDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLV 167
YDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRV ++
Sbjct: 467 YDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVGIL 607
>BF646398 similar to GP|14028993|gb Putative U1 small nuclear
ribonucleoprotein {Oryza sativa}, partial (29%)
Length = 503
Score = 262 bits (670), Expect(2) = 1e-79
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +2
Query: 148 ESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVL 207
ESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVL
Sbjct: 71 ESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVL 250
Query: 208 VDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHAD 267
VDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHAD
Sbjct: 251 VDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHAD 430
Query: 268 RDREKSRER 276
RDREKSRER
Sbjct: 431 RDREKSRER 457
Score = 51.6 bits (122), Expect(2) = 1e-79
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 125 NDPNISGDPYKTLFVARLSYETT 147
NDPNISGDPYKTLFVARLSYETT
Sbjct: 1 NDPNISGDPYKTLFVARLSYETT 69
>BG450526 similar to GP|18252907|gb putative U1 small nuclear
ribonucleoprotein 70 kDa {Arabidopsis thaliana}, partial
(51%)
Length = 569
Score = 109 bits (273), Expect = 1e-24
Identities = 56/141 (39%), Positives = 78/141 (54%)
Frame = +3
Query: 112 AKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAE 171
A+ + YDP DP +GDPY TLFV RLS TTE +++ +G +K +RLV D
Sbjct: 144 AQLCSSIGLYDPFGDPKATGDPYCTLFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIV 323
Query: 172 SNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTT 231
+ RGYAF+E+ R+M+ AY A ++ ++VD R + +P W PRRLGGGL
Sbjct: 324 TGASRGYAFVEFETEREMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGN 503
Query: 232 RVGGDEVNQRHSGREQQQSGP 252
+ G R GRE+ P
Sbjct: 504 KESG---QLRFGGREKPFRAP 557
>TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Arabidopsis
thaliana}, partial (49%)
Length = 1143
Score = 62.4 bits (150), Expect = 2e-10
Identities = 30/78 (38%), Positives = 47/78 (59%)
Frame = +1
Query: 135 KTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYK 194
K LFV LS+ T+E ++ FE +G + V+++ D S + +GYAFIEY AA K
Sbjct: 577 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALK 756
Query: 195 QADGRKIEGRRVLVDVER 212
+ +G+ I G ++VDV +
Sbjct: 757 EMNGKIINGWMIVVDVAK 810
>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
[imported] - Arabidopsis thaliana, partial (41%)
Length = 552
Score = 62.4 bits (150), Expect = 2e-10
Identities = 33/116 (28%), Positives = 60/116 (51%)
Frame = +2
Query: 129 ISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRD 188
+SG +FV L ++ TE +++ F+ YG I +++ + ++ +PRG+ FI + R
Sbjct: 119 MSGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRG 298
Query: 189 MKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSG 244
M+ A K+ DGR+I R + V+ + R+GGD+ +QR+ G
Sbjct: 299 MEDAIKEMDGREIGDRIISVNKAQ------------------PRMGGDDADQRYRG 412
>BG580560 similar to GP|14028993|gb| Putative U1 small nuclear
ribonucleoprotein {Oryza sativa}, partial (5%)
Length = 625
Score = 61.2 bits (147), Expect = 4e-10
Identities = 28/29 (96%), Positives = 29/29 (99%)
Frame = +1
Query: 163 RVRLVTDAESNKPRGYAFIEYLHTRDMKA 191
+VRLVTDAESNKPRGYAFIEYLHTRDMKA
Sbjct: 538 KVRLVTDAESNKPRGYAFIEYLHTRDMKA 624
>TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garden pea,
partial (79%)
Length = 1141
Score = 57.4 bits (137), Expect = 6e-09
Identities = 27/83 (32%), Positives = 45/83 (53%)
Frame = +1
Query: 132 DPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKA 191
+P ++VA L++E SR+++ F +G I R+V D E+ + RG+ F+ +M
Sbjct: 643 EPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMND 822
Query: 192 AYKQADGRKIEGRRVLVDVERGR 214
A DG+ +EGR + V V R
Sbjct: 823 AIAALDGQSLEGRTIRVSVAEDR 891
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/73 (17%), Positives = 36/73 (48%)
Frame = +1
Query: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
LFV ++ ++ F G ++ ++ + +++ RG+ F+ + ++A ++
Sbjct: 367 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 546
Query: 197 DGRKIEGRRVLVD 209
+G GR ++V+
Sbjct: 547 NGYDYNGRSLVVN 585
>TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown protein
{Arabidopsis thaliana}, partial (64%)
Length = 729
Score = 55.5 bits (132), Expect = 2e-08
Identities = 30/114 (26%), Positives = 56/114 (48%)
Frame = +3
Query: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
LFV LS+ TTE + F +YG + +++TD S K +GY F+ + + + A +
Sbjct: 132 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 311
Query: 197 DGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQS 250
+ + + GR V VD + T + G+ R +++N++H+ Q +
Sbjct: 312 NEKALNGRVVFVDYAKPDT-------KRSMGMPIARGPPEDLNKQHTTDSPQDA 452
>TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-rich
splicing factor - alfalfa, partial (95%)
Length = 1494
Score = 55.5 bits (132), Expect = 2e-08
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Frame = +3
Query: 127 PNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHT 186
P+IS D Y +L V +++ TT + F+ YG + + + D + + RG+AF+ Y +
Sbjct: 66 PDIS-DTY-SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYA 239
Query: 187 RDMKAAYKQADGRKIEGRRVLVD----------VERGRTVPNWRPRRLGGGLGTTRVGGD 236
+ A + DGR ++GR + V +++GR + PR +R
Sbjct: 240 DEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIET-SPRSKS---SRSRSPSK 407
Query: 237 EVNQRHSGREQQQSGPSRSEE-PRVREERHADRDREKSR 274
R +E+ SRS R +RH RDR+ R
Sbjct: 408 RSRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRR 524
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 54.7 bits (130), Expect = 4e-08
Identities = 34/133 (25%), Positives = 60/133 (44%)
Frame = +3
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIE 182
P D S D FV L++ T +++ F +G I +++ D E+ + RG+ F+
Sbjct: 15 PQFDSMGSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVT 194
Query: 183 YLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRH 242
+ + M+ A ++ +G+ I+GR + V+ + R GGG G G
Sbjct: 195 FAEEKSMRDAIEEMNGQDIDGRNITVNEAQSRGSGGGGRGGGGGGYGGGGGYGGGGGGYG 374
Query: 243 SGREQQQSGPSRS 255
G ++ G SRS
Sbjct: 375 GGGGRRDGGYSRS 413
>TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding protein -
garden pea, partial (89%)
Length = 813
Score = 54.7 bits (130), Expect = 4e-08
Identities = 28/93 (30%), Positives = 45/93 (48%)
Frame = +3
Query: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
LF+ LSY + ++ F +YG + R++TD E+ + RG+ F+ + +A
Sbjct: 192 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM- 368
Query: 197 DGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLG 229
DG+ + GR + V R RP GGG G
Sbjct: 369 DGQDLNGRNIRVSYANDRQAGGPRP---GGGYG 458
>TC79604 similar to GP|18175762|gb|AAL59923.1 unknown protein {Arabidopsis
thaliana}, partial (56%)
Length = 727
Score = 54.3 bits (129), Expect = 5e-08
Identities = 26/86 (30%), Positives = 43/86 (49%)
Frame = +2
Query: 132 DPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKA 191
+P LFV+ LS TT ++ F+ +G + R+VTD S +G+ F++Y D
Sbjct: 230 EPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAK 409
Query: 192 AYKQADGRKIEGRRVLVDVERGRTVP 217
+ DG+ +EG + + R R P
Sbjct: 410 GIEGMDGKFLEGWVIFAEYARPRPPP 487
>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 754
Score = 53.9 bits (128), Expect = 7e-08
Identities = 28/98 (28%), Positives = 50/98 (50%)
Frame = +2
Query: 138 FVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQAD 197
FV L++ T +++ F YG I +++ D E+ + RG+ F+ + + + M A + +
Sbjct: 110 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 289
Query: 198 GRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGG 235
G+ ++GR + TV + R GGG G R GG
Sbjct: 290 GQDLDGRNI--------TVNQAQSRGSGGGGGGGRGGG 379
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -2
Query: 51 PPLEYKPPPEKRKCPPL--TGMAQFVSKFAEPGEPEYSPPVP 90
PPL Y PPP PPL S + P P Y PP P
Sbjct: 552 PPLLYPPPPYPPPPPPLL*PPPPPRRSPYPPPPPPPYPPPPP 427
>TC87506 similar to GP|9843655|emb|CAC03601.1 SC35-like splicing factor
SCL28 28 kD {Arabidopsis thaliana}, partial (51%)
Length = 1558
Score = 53.9 bits (128), Expect = 7e-08
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Frame = +3
Query: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
L V L + ++ FE YG +K V L + + +PRG+ F++Y H D A +Q
Sbjct: 411 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQL 590
Query: 197 DGRKIEGRRV-LVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQS----- 250
+ I GR + +V E R P + R+ G+ R GG +R R ++S
Sbjct: 591 NHTIIGGREIRIVFAEENRKTP--QEMRVTTSHGSGRSGGGGSRRRARSRSPRRSRYRSY 764
Query: 251 ----GPSR--SEEPRVREERHADRDREKSR 274
P+R S + R R++ R R SR
Sbjct: 765 SKSPSPARDDSRDGRGRDDYSPKRSRSYSR 854
>TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava bean
(fragment), partial (90%)
Length = 1214
Score = 53.5 bits (127), Expect = 9e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
LFV L++ T + + F+ +G + R++ D E+ K RGY F+ Y +M A
Sbjct: 670 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 849
Query: 197 DGRKIEGRRVLVDVERGR 214
D ++EGR + V + +G+
Sbjct: 850 DNVELEGRTLRVSLAQGK 903
Score = 44.3 bits (103), Expect = 5e-05
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 108 EKGAAKAAEELEKYDPHNDPNISG------DPYKTLFVARLSYETTESRIKREFESYGAI 161
EK + E+ E+ NI G D L+ L Y + + E YG+
Sbjct: 292 EKVVVEEEEKEEEEVVEEKENIGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSA 471
Query: 162 KRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVD 209
+ + ++ D ++ K RG+AF+ D A + DG++ GR + V+
Sbjct: 472 ELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVN 615
>AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding protein
{Medicago sativa}, complete
Length = 437
Score = 51.6 bits (122), Expect = 3e-07
Identities = 25/92 (27%), Positives = 48/92 (52%)
Frame = +1
Query: 138 FVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQAD 197
FV L++ T +++ F YG I +++ D E+ + RG+ F+ + + + M A + +
Sbjct: 67 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 246
Query: 198 GRKIEGRRVLVDVERGRTVPNWRPRRLGGGLG 229
G+ ++GR + TV + R +GGG G
Sbjct: 247 GQDLDGRNI--------TVNQAQSRGIGGGGG 318
>TC77695 similar to PIR|T09704|T09704 probable arginine/serine-rich splicing
factor - alfalfa, partial (83%)
Length = 1657
Score = 51.2 bits (121), Expect = 4e-07
Identities = 42/162 (25%), Positives = 73/162 (44%), Gaps = 12/162 (7%)
Frame = +1
Query: 127 PNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHT 186
P+I+ D Y +L V +++ TT + F+ YG + + + D + + RG+AF+ Y +
Sbjct: 94 PDIA-DTY-SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYA 267
Query: 187 RDMKAAYKQADGRKIEGRRVLVD----------VERGRTV-PNWRPRRLGGGLGTTRVGG 235
+ A + DGR ++GR + V + +GR + + R + + R
Sbjct: 268 DEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHH 447
Query: 236 DEVNQRHSGREQQQSGPSRSEEPRVREERHADRD-REKSRER 276
D+ + R + R E R R R DRD R +SR R
Sbjct: 448 DDYRDKGYRRRSRSRSYDRYERDRYRGGR--DRDYRRRSRSR 567
>CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein cp29 protein
- Arabidopsis thaliana, partial (20%)
Length = 298
Score = 50.8 bits (120), Expect = 6e-07
Identities = 27/94 (28%), Positives = 50/94 (52%)
Frame = +2
Query: 151 IKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
+K +FE +G ++ ++ D E+ + RG+ F+ Y + +AA + + ++ +GR + VD
Sbjct: 5 LKGKFEEFGNVEDAVVIRDRETGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVDR 184
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSG 244
R+ P R GGG G GG ++ +SG
Sbjct: 185 ASERSTPAPRSGGYGGGGG----GGGYSSRGNSG 274
>AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich protein-1
(RGP-1c) - wood tobacco, partial (62%)
Length = 310
Score = 50.8 bits (120), Expect = 6e-07
Identities = 26/98 (26%), Positives = 49/98 (49%)
Frame = +2
Query: 138 FVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQAD 197
FV L++ T +++ F YG I +++ D E+ + RG+ F+ + + M+ A + +
Sbjct: 23 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 202
Query: 198 GRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGG 235
G+ ++GR + V+ + R GGG G GG
Sbjct: 203 GQDMDGRNITVNEAQSRGSGG------GGGRGGGGYGG 298
>TC80464 weakly similar to GP|13548328|emb|CAC35875. putative protein
{Arabidopsis thaliana}, partial (19%)
Length = 1437
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/167 (23%), Positives = 68/167 (40%)
Frame = +3
Query: 108 EKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLV 167
+K A EE + D +P + LFV L Y TTE ++ F +G++ + LV
Sbjct: 921 DKSQVNATEEEGQLSNPEDKKGVSEPCR-LFVRNLPYSTTEEELEEHFSQFGSVSQAHLV 1097
Query: 168 TDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGG 227
D ++ + +G A+I + A +++D +GR + V +P
Sbjct: 1098 VDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLHVMP----AIP---------- 1235
Query: 228 LGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSR 274
RHS E+ + S++ + R EER A + +R
Sbjct: 1236 -------------RHSNNEENKDQGSKTLKQRRDEERKAAEAKGDTR 1337
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,171,249
Number of Sequences: 36976
Number of extensions: 108057
Number of successful extensions: 1240
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of query: 276
length of database: 9,014,727
effective HSP length: 95
effective length of query: 181
effective length of database: 5,502,007
effective search space: 995863267
effective search space used: 995863267
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147964.4