TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147961.4 - phase: 0 
         (266 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91234 similar to GP|2766715|gb|AAB95486.1| chromomethylase {Ar...    31  0.57
BF641018 similar to PIR|G96769|G96 unknown protein F9E11.1 [impo...    29  1.6
BQ751814 similar to GP|18043248|gb| RIKEN cDNA 4833422F24 gene {...    28  4.8

>TC91234 similar to GP|2766715|gb|AAB95486.1| chromomethylase {Arabidopsis
           arenosa}, partial (24%)
          Length = 803

 Score = 30.8 bits (68), Expect = 0.57
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +2

Query: 105 LTDDKLDEADSGSYNVLSRVFKFNRSRPRIVQDTTVGSATNENAKICGVMLTDGSICKRP 164
           L  +KL      ++ V+SR        P   ++ TV  +TNEN ++   +  +G+I   P
Sbjct: 56  LATEKLPSYPLPTHKVVSRSVI-----PTEFEEITVAYSTNENCQLAKALNLEGAINDLP 220

Query: 165 PVEKRVRCPEHK-GMRINASTTKAIRSPKSEL 195
           PVE      E   G        K IR  +SE+
Sbjct: 221 PVENDDSDDERSYGTTPRTDFQKYIRLQRSEM 316


>BF641018 similar to PIR|G96769|G96 unknown protein F9E11.1 [imported] -
           Arabidopsis thaliana, partial (2%)
          Length = 583

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 163 RPPVEKRVRCPEHKGMRINASTTKAIRSPKSELE 196
           +PP+EKR+RC  H   +I  STT     P+S  E
Sbjct: 128 QPPIEKRLRCHLHLE*KIL*STTVFFIKPESATE 229


>BQ751814 similar to GP|18043248|gb| RIKEN cDNA 4833422F24 gene {Mus
           musculus}, partial (4%)
          Length = 531

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 239 DDGSTCRRQPVKGRKRCQEHKGRRIR 264
           D+GS  RR    GR +C+ H GRR R
Sbjct: 526 DEGSRGRRFGCGGRPQCRAHGGRRNR 449


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,640,618
Number of Sequences: 36976
Number of extensions: 95276
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of query: 266
length of database: 9,014,727
effective HSP length: 94
effective length of query: 172
effective length of database: 5,538,983
effective search space: 952705076
effective search space used: 952705076
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)