BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147961.1 - phase: 0
(46 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82822 similar to GP|2317909|gb|AAC24373.1| CER1-like protein {... 53 3e-08
TC87337 similar to GP|10716610|gb|AAG21908.1 putative CER1 {Oryz... 48 9e-07
TC80863 similar to GP|498038|gb|AAA33934.1|| lipid transfer prot... 28 0.99
TC76709 similar to GP|20259017|gb|AAM14224.1 unknown protein {Ar... 27 1.3
BI263281 weakly similar to GP|498038|gb|A lipid transfer protein... 27 1.7
TC91683 weakly similar to GP|9757799|dbj|BAB08297.1 contains sim... 27 1.7
TC81981 similar to GP|11994545|dbj|BAB02732. emb|CAB62106.1~gene... 27 2.2
TC76756 similar to PIR|S70586|S70586 proline-rich protein 14K -... 26 3.8
TC84025 25 8.4
TC90298 25 8.4
TC86219 similar to GP|17065520|gb|AAL32914.1 Unknown protein {Ar... 25 8.4
>TC82822 similar to GP|2317909|gb|AAC24373.1| CER1-like protein
{Arabidopsis thaliana}, partial (19%)
Length = 580
Score = 52.8 bits (125), Expect = 3e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1
Query: 1 MASKPGILTNWPWEPLGSFKVLLIYSYI 28
MASKPGILTNWPWEPLGSFK +++ +I
Sbjct: 7 MASKPGILTNWPWEPLGSFKFVIVIPWI 90
>TC87337 similar to GP|10716610|gb|AAG21908.1 putative CER1 {Oryza
sativa}, partial (70%)
Length = 2272
Score = 47.8 bits (112), Expect = 9e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 1 MASKPGILTNWPWEPLGSFKVLLIYSYIFTKT 32
MAS+PGILT+WPW+PLGSFK +++ ++ T
Sbjct: 33 MASRPGILTDWPWKPLGSFKYVVLAPWVIHST 128
>TC80863 similar to GP|498038|gb|AAA33934.1|| lipid transfer protein
{Senecio odorus}, partial (75%)
Length = 1474
Score = 27.7 bits (60), Expect = 0.99
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 8 LTNWPWEPLGSFKVLL----IYSYIFTKTNASPSF 38
L++WPWE G FK +L + ++ N PS+
Sbjct: 13 LSSWPWENFGIFKYVLYGPIVGKVLYEILNEEPSY 117
>TC76709 similar to GP|20259017|gb|AAM14224.1 unknown protein {Arabidopsis
thaliana}, partial (87%)
Length = 2358
Score = 27.3 bits (59), Expect = 1.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 22 LLIYSYIFTKTNASPSFFLT 41
LLI+S IFTK N FFLT
Sbjct: 748 LLIFSIIFTKPNTKILFFLT 689
>BI263281 weakly similar to GP|498038|gb|A lipid transfer protein {Senecio
odorus}, partial (28%)
Length = 681
Score = 26.9 bits (58), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = +3
Query: 8 LTNWPWEPLGSFKVLLIYSYI 28
L++WPWE G FK +L ++
Sbjct: 27 LSSWPWENFGIFKYVLYGPFV 89
>TC91683 weakly similar to GP|9757799|dbj|BAB08297.1 contains similarity to
lipase~gene_id:MUA22.18 {Arabidopsis thaliana}, partial
(67%)
Length = 1235
Score = 26.9 bits (58), Expect = 1.7
Identities = 10/35 (28%), Positives = 21/35 (59%)
Frame = +1
Query: 10 NWPWEPLGSFKVLLIYSYIFTKTNASPSFFLTHSL 44
NW W+ L + + ++ Y+F++T + ++ HSL
Sbjct: 502 NWSWDELVIYDLPAVFDYVFSQTGQKIN-YVGHSL 603
>TC81981 similar to GP|11994545|dbj|BAB02732.
emb|CAB62106.1~gene_id:MGD8.12~similar to unknown
protein {Arabidopsis thaliana}, partial (4%)
Length = 635
Score = 26.6 bits (57), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 13 WEPLGSFKVLLIYSYIFTKTNASPSFFL 40
W PLG+F+V+ ++S I + SP FFL
Sbjct: 222 W*PLGTFRVVSLFSMI----SQSPWFFL 293
>TC76756 similar to PIR|S70586|S70586 proline-rich protein 14K - kidney
bean, partial (79%)
Length = 711
Score = 25.8 bits (55), Expect = 3.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 12 PWEPLGSFKVLLIYSYIF 29
PW+P G +VL+++S I+
Sbjct: 73 PWKPFGMIEVLILFSLIW 20
>TC84025
Length = 776
Score = 24.6 bits (52), Expect = 8.4
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +2
Query: 16 LGSFKVLLIYSYIFTKTNASPSFFLTHSL 44
LG+F+ LLIYSY+ T FFL +SL
Sbjct: 308 LGTFE-LLIYSYVANYTIR*HFFFLRNSL 391
>TC90298
Length = 1593
Score = 24.6 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 19 FKVLLIYSYIFTKTNASPSFF 39
F + +YSY F K N P +
Sbjct: 190 FTITTVYSYFFDKVNGKPDVY 252
>TC86219 similar to GP|17065520|gb|AAL32914.1 Unknown protein {Arabidopsis
thaliana}, complete
Length = 522
Score = 24.6 bits (52), Expect = 8.4
Identities = 7/16 (43%), Positives = 12/16 (74%)
Frame = -3
Query: 10 NWPWEPLGSFKVLLIY 25
NWPW L F++L+++
Sbjct: 91 NWPWIELSHFQMLMLW 44
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,640,611
Number of Sequences: 36976
Number of extensions: 15011
Number of successful extensions: 134
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of query: 46
length of database: 9,014,727
effective HSP length: 22
effective length of query: 24
effective length of database: 8,201,255
effective search space: 196830120
effective search space used: 196830120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147961.1