TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147959.10 + phase: 1 /pseudo
         (378 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW329067 similar to GP|9955519|emb| putative protein {Arabidopsi...    39  0.003
TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protei...    29  3.4
TC83256 similar to GP|21537173|gb|AAM61514.1 unknown {Arabidopsi...    28  5.8
TC93692 similar to GP|20161344|dbj|BAB90268. contains ESTs AU086...    28  7.6
TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Ar...    28  7.6
TC80360 PIR|T01970|T01970 probable wound-induced protein T9A4.6 ...    27  9.9

>AW329067 similar to GP|9955519|emb| putative protein {Arabidopsis thaliana},
           partial (6%)
          Length = 672

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +2

Query: 297 YPYMEAESKDLAMEDVDILLNHYKDLVAKYTIICKAINYLSMS 339
           +PYM A   DL + DV+ LL +YK LV+KY  + K +   S S
Sbjct: 197 FPYMFASVGDLTVSDVEDLLKNYKRLVSKYVCLSKGLGVSSSS 325


>TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protein {Medicago
           sativa}, complete
          Length = 1190

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 24/96 (25%), Positives = 43/96 (44%)
 Frame = +3

Query: 69  LLQTFLKPEHLDIPPVLHNEASWLLAEKELQKINAFKAPQEKLSTIMNCCRVINNLLLNA 128
           +L T     H  +PP L  E+ W L    L  I +       +  I+ CC     + LN 
Sbjct: 813 ILPTQSTTTHGPMPPTLFPESEWSLC--FLLCILSCNVLPAGM*IIIMCC-----MQLNV 971

Query: 129 AMSEYVPAGADDFIPVLIYVTIKARLALLVQTSNSL 164
           ++  YV   +   IP+ +++TI A    L+++  ++
Sbjct: 972 SLFFYVNLLSQSHIPIFMFLTIYATKIELIKSLKNI 1079


>TC83256 similar to GP|21537173|gb|AAM61514.1 unknown {Arabidopsis
           thaliana}, partial (17%)
          Length = 531

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = -1

Query: 317 NHYKDLVAKYTIIC--------KAINYLSMSEKEPLLHQLEMQGEGSMLSECH 361
           NH K  + K T+ C        ++ NY   +     LHQL+  GE    + CH
Sbjct: 339 NHNKPYIIKQTLTCDSRVPAIPRS*NYYQKTLFTCNLHQLQQHGEACFYACCH 181


>TC93692 similar to GP|20161344|dbj|BAB90268. contains ESTs AU086067(S4642)
           D41819(S4642)~similar to Arabidopsis thaliana chromosome
           1  At1g49040~, partial (7%)
          Length = 626

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 198 PSQLMKSNLRSACKQPNWPRKSQVNYTLHVKLNKK 232
           P QL       A  QP+W R+ Q NY + +  ++K
Sbjct: 214 P*QLFSVGFCKAANQPSWTRRCQKNYQVSLGADEK 110


>TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Arabidopsis
           thaliana}, partial (43%)
          Length = 1068

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 300 MEAESKDLAMEDVDILLNHYKDLVAKYTIICKAINYLSMSEK-EPLL 345
           M  E +   +E+ + LLN  +DL+A YT   K++  L  SE  EP++
Sbjct: 520 MTVEGQKKKLEESEQLLNQRRDLIANYT---KSVEELVRSEP*EPVI 651


>TC80360 PIR|T01970|T01970 probable wound-induced protein T9A4.6 -
           Arabidopsis thaliana, partial (21%)
          Length = 679

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/46 (32%), Positives = 25/46 (53%)
 Frame = +3

Query: 37  LEKYIMTKLFSRTFAASPEDAKIDHEISEKISLLQTFLKPEHLDIP 82
           L+++I  K+FS+ F      +K+DH+  EK  L+ T    E+   P
Sbjct: 129 LKRFIRAKIFSKLFQTWRRQSKMDHK--EKTLLVLTKAPQEYNTFP 260


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.328    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,536,308
Number of Sequences: 36976
Number of extensions: 152402
Number of successful extensions: 956
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of query: 378
length of database: 9,014,727
effective HSP length: 98
effective length of query: 280
effective length of database: 5,391,079
effective search space: 1509502120
effective search space used: 1509502120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)