BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.14 + phase: 0
(129 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 53 4e-08
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 43 4e-05
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 37 0.002
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 35 0.006
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 35 0.008
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 35 0.008
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 33 0.031
CB894419 weakly similar to GP|10177935|db copia-type polyprotein... 30 0.26
AL383732 27 1.7
AW560027 similar to GP|20466318|gb unknown protein {Arabidopsis ... 27 2.2
TC91434 weakly similar to PIR|T06144|T06144 disease resistance p... 27 2.9
TC81061 similar to SP|Q9XFK7|MFT_ARATH MOTHER of FT and TF1 prot... 25 6.4
AL367277 homologue to PIR|S14974|S149 extensin class I (clone uG... 25 6.4
TC88415 similar to GP|18057164|gb|AAL58187.1 putative retinoblas... 25 8.4
TC79410 similar to PIR|H84518|H84518 pathogenesis-related PR-1-l... 25 8.4
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 52.8 bits (125), Expect = 4e-08
Identities = 22/35 (62%), Positives = 30/35 (84%)
Frame = -2
Query: 1 MKVKSAFLNGAISEEVYVKQPPGFEDLKHPDYVYK 35
M VKSAF+NG + EEV+VKQPPGFED + P++V++
Sbjct: 274 MDVKSAFINGDLKEEVFVKQPPGFEDAEVPNHVFR 170
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 42.7 bits (99), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (56%)
Frame = +1
Query: 52 IQINQCKDEVYVHQSKYTKDLLMKFKVDDCNEMNTPMHPTCTLSEEDADAKVDQKLFRGI 111
+++ Q ++ +Y+ Q KY DLL +F ++ N P+ P C L +++ KVD ++ I
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 112 I 112
+
Sbjct: 181 V 183
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 37.0 bits (84), Expect = 0.002
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = +1
Query: 36 DEIEMSMMGELKFFLRIQINQCKDEVYVHQSKYTKDLLMKFKVDDCNEMNTPMHPTC 92
+E E+ +G LK+FL +++ + K + Q KY DLL + ++ C + P C
Sbjct: 199 EEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPYGCNC 369
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 35.4 bits (80), Expect = 0.006
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = +1
Query: 3 VKSAFLNGAISEEVYVKQPPGFE 25
+ +AFLNG + EEVY+ QP GFE
Sbjct: 388 INNAFLNGFLQEEVYMSQPQGFE 456
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 35.0 bits (79), Expect = 0.008
Identities = 20/87 (22%), Positives = 41/87 (46%)
Frame = +2
Query: 26 DLKHPDYVYKDEIEMSMMGELKFFLRIQINQCKDEVYVHQSKYTKDLLMKFKVDDCNEMN 85
+++H D ++ +G L++FL +++ + K + ++Q KYT +LL
Sbjct: 221 EIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGNLAVKSTL 400
Query: 86 TPMHPTCTLSEEDADAKVDQKLFRGII 112
TP + L D+ D+ +R +I
Sbjct: 401 TPYDISLKLHNSDSPLYNDETQYRRLI 481
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 35.0 bits (79), Expect = 0.008
Identities = 15/27 (55%), Positives = 19/27 (69%)
Frame = -1
Query: 1 MKVKSAFLNGAISEEVYVKQPPGFEDL 27
M VK+AFL G + +EVY+ PPG E L
Sbjct: 237 MDVKNAFLQGELEDEVYMYPPPGLEHL 157
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 33.1 bits (74), Expect = 0.031
Identities = 14/24 (58%), Positives = 19/24 (78%)
Frame = +2
Query: 1 MKVKSAFLNGAISEEVYVKQPPGF 24
+ VKSAFL G ++EEV+V QP G+
Sbjct: 368 LDVKSAFLYGELNEEVFVDQPQGY 439
Score = 26.9 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 24 FEDLKHPDYVYKDEIEMSMMGELKFFLRIQINQCKDEVYV 63
FE+ K K E MS +G++ +FL +++ Q + +Y+
Sbjct: 663 FEEFKKS---MKKEFNMSDLGKMHYFLGVEVTQNEKGIYI 773
>CB894419 weakly similar to GP|10177935|db copia-type polyprotein
{Arabidopsis thaliana}, partial (2%)
Length = 170
Score = 30.0 bits (66), Expect = 0.26
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = +3
Query: 67 KYTKDLLMKFKVDDCNEMNTPMHPTCTLSEEDADAKVDQKLFRGII 112
K D+L KFK++ ++TP+ L+ E +VD ++ +I
Sbjct: 6 KCASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLI 143
>AL383732
Length = 366
Score = 27.3 bits (59), Expect = 1.7
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = -1
Query: 52 IQINQCKDEVYVHQSKYTKDLLMKFK 77
IQ+NQCK +Y+H ++L ++F+
Sbjct: 99 IQLNQCKQTIYIHNK--PRNLTLQFR 28
>AW560027 similar to GP|20466318|gb unknown protein {Arabidopsis thaliana},
partial (24%)
Length = 585
Score = 26.9 bits (58), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +2
Query: 22 PGFEDLKHPDYVYKDEIEMSMMGE 45
P +DLK PDYV + EI+ +G+
Sbjct: 113 PVIDDLKKPDYVERVEIKQFSLGD 184
>TC91434 weakly similar to PIR|T06144|T06144 disease resistance protein
homolog F24J7.70 - Arabidopsis thaliana, partial (4%)
Length = 940
Score = 26.6 bits (57), Expect = 2.9
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 13/65 (20%)
Frame = -3
Query: 22 PGFEDLKHPD-YVYKDEIEMSM-MGEL-------KF----FLRIQINQCKDEVYVHQSKY 68
PGF +L+HPD + Y E+ +M +G L KF FLR I+ ++H SK+
Sbjct: 554 PGFINLEHPDIFRYLRELRPNMLLGMLTRL*QRSKFK*TSFLRSPIDGSNSTSFIHLSKF 375
Query: 69 TKDLL 73
L
Sbjct: 374 NHSRL 360
>TC81061 similar to SP|Q9XFK7|MFT_ARATH MOTHER of FT and TF1 protein.
[Mouse-ear cress] {Arabidopsis thaliana}, complete
Length = 846
Score = 25.4 bits (54), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = -1
Query: 72 LLMKFKVDDCNEMNTPMHPTCTLSEEDADA 101
LL++ KVD C+ T +H TC ++ + D+
Sbjct: 591 LLLRVKVD-CSYRKTKVHLTCKITSVETDS 505
>AL367277 homologue to PIR|S14974|S149 extensin class I (clone uG-18) -
tomato (fragment), partial (46%)
Length = 254
Score = 25.4 bits (54), Expect = 6.4
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +1
Query: 17 YVKQPPGFEDLKHPDYVYK 35
Y K PP +++ HP Y YK
Sbjct: 148 YYKSPPPPKEISHPPYNYK 204
>TC88415 similar to GP|18057164|gb|AAL58187.1 putative retinoblastoma
binding protein {Oryza sativa}, partial (2%)
Length = 1410
Score = 25.0 bits (53), Expect = 8.4
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +2
Query: 37 EIEMSMMGELKFFL---RIQINQCKDEVY--VHQSKYTKDLLMKFKVDDCNEMNTPMHPT 91
+++M+++ L L IQ+ C+ + VH+ + KF C +HP
Sbjct: 89 QMDMNLIASLNLIL*LNFIQLQDCQQIIQSVVHKINLFWGIAQKFLNQKCPTFPFLLHPL 268
Query: 92 CTLSEEDADAKVDQKLFRGII 112
L + + K+ RGI+
Sbjct: 269 FVLYQNLMTVPLLPKMLRGIV 331
>TC79410 similar to PIR|H84518|H84518 pathogenesis-related PR-1-like protein
[imported] - Arabidopsis thaliana, partial (84%)
Length = 1002
Score = 25.0 bits (53), Expect = 8.4
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 8 LNGAISEEVYVKQPPGF 24
LN +EEVY+ QPP F
Sbjct: 911 LNETFNEEVYMSQPPVF 961
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,771,945
Number of Sequences: 36976
Number of extensions: 46342
Number of successful extensions: 217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of query: 129
length of database: 9,014,727
effective HSP length: 85
effective length of query: 44
effective length of database: 5,871,767
effective search space: 258357748
effective search space used: 258357748
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147714.14