TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147538.7 - phase: 0 /pseudo
         (113 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF643893 similar to GP|17047034|gb| Putative xyloglucan endo-tra...    29  0.31
BQ139365 similar to PIR|S52815|S52 probable membrane protein YPR...    28  0.40
TC80272 similar to GP|15620810|dbj|BAB67768. RPS6-like protein {...    28  0.40
TC90503 weakly similar to GP|22655264|gb|AAM98222.1 unknown prot...    28  0.69
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {...    27  0.90
TC86517 homologue to PIR|T09640|T09640 protein phosphatase 2C - ...    27  1.2
TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical prot...    27  1.5
TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Ar...    27  1.5
TC76847 homologue to SP|P08927|RUBB_PEA RuBisCO subunit binding-...    27  1.5
TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical prot...    27  1.5
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel...    27  1.5
TC76846 similar to GP|7208784|emb|CAB76914.1 60S ribosomal prote...    26  2.0
TC76845 similar to GP|7208784|emb|CAB76914.1 60S ribosomal prote...    26  2.0
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome...    26  2.0
BE319693                                                               26  2.6
TC86679 similar to GP|17065046|gb|AAL32677.1 Unknown protein {Ar...    26  2.6
TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot...    26  2.6
TC82791 similar to GP|8809639|dbj|BAA97190.1 contains similarity...    26  2.6
TC82478 similar to GP|15146316|gb|AAK83641.1 AT5g67220/K21H1_18 ...    26  2.6
CA860191 homologue to GP|19697342|gb hypothetical protein {Dicty...    26  2.6

>BF643893 similar to GP|17047034|gb| Putative xyloglucan
           endo-transglycosylase {Oryza sativa}, partial (4%)
          Length = 429

 Score = 28.9 bits (63), Expect = 0.31
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 50  HVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDSFEVKLEQELNGLRQKAGG 108
           H QVN++S   N   I   +L + T+K  N C     + D   V  E   + LR+  GG
Sbjct: 405 HTQVNYLSCIRNSKQIKYDELIKPTKKDTNRC-----VHDEKGVCKELRSDALRKLKGG 244


>BQ139365 similar to PIR|S52815|S52 probable membrane protein YPR002w - yeast
           (Saccharomyces cerevisiae), partial (29%)
          Length = 486

 Score = 28.5 bits (62), Expect = 0.40
 Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 1/41 (2%)
 Frame = -2

Query: 32  VDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIAD-QDLA 71
           +DED   + ++ E  +E H  ++ V  +H   NIAD +DLA
Sbjct: 323 LDEDNVVQTDLVERVLEGHAALDLVGPDHGLENIADLEDLA 201


>TC80272 similar to GP|15620810|dbj|BAB67768. RPS6-like protein {Arabidopsis
           thaliana}, partial (35%)
          Length = 1026

 Score = 28.5 bits (62), Expect = 0.40
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = +3

Query: 33  DEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDL 70
           +E+ D+E E D+ED ED    + + G      I D DL
Sbjct: 729 EEESDDEGEWDDEDEEDGSDYDDIEGGDGIFIIDDDDL 842


>TC90503 weakly similar to GP|22655264|gb|AAM98222.1 unknown protein
           {Arabidopsis thaliana}, partial (8%)
          Length = 846

 Score = 27.7 bits (60), Expect = 0.69
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 14  KSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVED 49
           K  ++  F+ N    L  VDEDG++   +D+ D+ D
Sbjct: 114 KICSVFNFTANANFILSYVDEDGEQVNLVDDNDLND 221


>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
           thaliana}, partial (39%)
          Length = 883

 Score = 27.3 bits (59), Expect = 0.90
 Identities = 12/17 (70%), Positives = 13/17 (75%)
 Frame = +3

Query: 33  DEDGDEEMEIDEEDVED 49
           D+DGDEE E D ED ED
Sbjct: 483 DDDGDEEDEEDGEDEED 533


>TC86517 homologue to PIR|T09640|T09640 protein phosphatase 2C - alfalfa,
           complete
          Length = 1616

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -3

Query: 34  EDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDSFEV 93
           E+G+E+ E +EED ED V V        + N+   DL Q  +++    G        FE 
Sbjct: 306 EEGEEQGEGEEEDDEDVVVVVEDGLR*ERDNVNVSDLLQKRDEEGENTG-------EFET 148

Query: 94  KLEQEL 99
             EQ++
Sbjct: 147 ATEQDM 130


>TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
           arietinum}, partial (95%)
          Length = 1084

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 15/49 (30%), Positives = 26/49 (52%)
 Frame = +3

Query: 32  VDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNP 80
           VD++ D+E + +EED ED  +  F   +H          A + +++NNP
Sbjct: 300 VDDEDDDEDDDNEEDYEDEDEDAFDVHDH----------ASVGDRENNP 416


>TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Arabidopsis
           thaliana}, partial (17%)
          Length = 746

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = +1

Query: 33  DEDGDEEMEIDEEDVE 48
           DEDGDEE + D+ED E
Sbjct: 496 DEDGDEEEDDDDEDDE 543


>TC76847 homologue to SP|P08927|RUBB_PEA RuBisCO subunit binding-protein
           beta subunit  chloroplast precursor (60 kDa chaperonin
           beta subunit), partial (96%)
          Length = 2096

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
 Frame = -2

Query: 33  DEDGDEEMEIDEEDV-EDHVQVNFVSGNHNKM 63
           +EDG+EEME +EE + ED      V  N  KM
Sbjct: 208 EEDGNEEMEAEEERLHEDRFNDAMVVWNWEKM 113


>TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
           arietinum}, partial (91%)
          Length = 1311

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 15/49 (30%), Positives = 26/49 (52%)
 Frame = +1

Query: 32  VDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNP 80
           VD++ D+E + +EED ED  +  F   +H          A + +++NNP
Sbjct: 481 VDDEDDDEDDDNEEDYEDEDEDAFDVHDH----------ASVGDRENNP 597


>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
           herpesvirus 3}, partial (8%)
          Length = 986

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = +3

Query: 33  DEDGDEEMEIDEEDVED 49
           DEDGD++ E D+ED +D
Sbjct: 606 DEDGDDQDEDDDEDEDD 656



 Score = 24.3 bits (51), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 33  DEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKK 77
           DED D+E E  EED E+ V       N  +    D++  Q  +K+
Sbjct: 645 DEDDDDEEEGGEEDEEEGVD---EEDNEEEEEDEDEEALQPPKKR 770


>TC76846 similar to GP|7208784|emb|CAB76914.1 60S ribosomal protein L6
           {Cicer arietinum}, partial (68%)
          Length = 718

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 70  LAQLTEKKNNPCGFQASIKDSFEVKLEQELNGLRQK 105
           L+ L+  KN+P  F     DSFE  L   L+ L ++
Sbjct: 359 LSSLSASKNSPSPFLVFFWDSFEKYLSSNLSALTEE 252


>TC76845 similar to GP|7208784|emb|CAB76914.1 60S ribosomal protein L6
           {Cicer arietinum}, complete
          Length = 984

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 70  LAQLTEKKNNPCGFQASIKDSFEVKLEQELNGLRQK 105
           L+ L+  KN+P  F     DSFE  L   L+ L ++
Sbjct: 665 LSSLSASKNSPSPFLVFFWDSFEKYLSSNLSALTEE 558


>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
           protein 1 {Atropa belladonna}, partial (46%)
          Length = 583

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = +2

Query: 33  DEDGDEEMEIDEEDVED 49
           DEDGDEE + D++D +D
Sbjct: 95  DEDGDEEDDDDDDDDDD 145


>BE319693 
          Length = 605

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
 Frame = +1

Query: 14  KSLNILQFSLNRPSSLCCVDED-GDEEMEIDEEDVEDHVQVNFVSG 58
           K   +++  LN+       DE+  DEE+EID + ++D V+   + G
Sbjct: 421 KHEKVVEIMLNKDDDAKSNDENVDDEEVEIDAKIIDDSVKAACIVG 558


>TC86679 similar to GP|17065046|gb|AAL32677.1 Unknown protein {Arabidopsis
           thaliana}, partial (48%)
          Length = 1445

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (59%)
 Frame = +1

Query: 22  SLNRPSSLCCVDEDGDEEMEIDEEDVEDHV 51
           S +    LC +D++ D+ +   E+D EDHV
Sbjct: 424 SESEDDELCPLDDEEDDHVGDVEQDEEDHV 513


>TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
           {Homo sapiens}, partial (25%)
          Length = 557

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 11/18 (61%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = -1

Query: 33  DEDGDEEME-IDEEDVED 49
           +EDG+EE E +D+EDV+D
Sbjct: 398 NEDGEEEEEEVDDEDVDD 345


>TC82791 similar to GP|8809639|dbj|BAA97190.1 contains similarity to
           DNA-binding protein~gene_id:MMI9.9 {Arabidopsis
           thaliana}, partial (17%)
          Length = 765

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (53%)
 Frame = -3

Query: 26  PSSLCCVDEDGDEEMEIDEEDVED 49
           PS+ CC   DGD+E    ++   D
Sbjct: 226 PSASCCCAPDGDQEENFPQQPARD 155


>TC82478 similar to GP|15146316|gb|AAK83641.1 AT5g67220/K21H1_18
           {Arabidopsis thaliana}, partial (31%)
          Length = 661

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 50  HVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIK 88
           H +   VS   N +     D+  ++++ N+PC FQ +I+
Sbjct: 615 HQESTIVSLFSNPLRTPKIDINVISKRLNSPCSFQQNIR 499


>CA860191 homologue to GP|19697342|gb hypothetical protein {Dictyostelium
           discoideum}, partial (1%)
          Length = 504

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 18/55 (32%), Positives = 21/55 (37%), Gaps = 16/55 (29%)
 Frame = +2

Query: 37  DEEMEIDEEDVEDHVQVNFVSGN----------------HNKMNIADQDLAQLTE 75
           DEE E ++E+ ED     F S N                HNK N  D  L Q  E
Sbjct: 248 DEEEEEEDEEEEDEFTTTFNSNNNNNNSNNNNNNNEDNHHNKFNSEDAMLPQTQE 412


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.314    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,276,734
Number of Sequences: 36976
Number of extensions: 34928
Number of successful extensions: 279
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 113
length of database: 9,014,727
effective HSP length: 89
effective length of query: 24
effective length of database: 5,723,863
effective search space: 137372712
effective search space used: 137372712
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)