BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.6 + phase: 0
(80 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76533 homologue to PIR|T47865|T47865 transport protein subunit... 157 9e-40
TC79958 similar to PIR|T47865|T47865 transport protein subunit-l... 146 1e-36
BI312088 similar to PIR|T47865|T4786 transport protein subunit-l... 134 5e-33
BQ155502 similar to GP|9757748|dbj| gene_id:MUF9.9~unknown prote... 65 5e-12
TC89554 similar to GP|13605675|gb|AAK32831.1 AT5g62640/MRG21_6 {... 29 0.29
BQ141681 weakly similar to GP|15145793|gb| basic proline-rich pr... 28 0.49
BF521488 weakly similar to GP|18447433|gb RE28280p {Drosophila m... 28 0.64
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 28 0.64
BF646401 similar to PIR|A02951|KRMS keratin type II cytoskeleta... 27 1.1
TC86218 weakly similar to GP|14488275|dbj|BAB60898. serine palmi... 27 1.9
CA859196 weakly similar to PIR|C34715|R6BY 60s acidic ribosomal ... 26 2.4
TC89191 similar to GP|14272369|emb|CAC40022. bZIP transcription ... 26 2.4
BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 26 3.2
BQ144499 similar to GP|20378854|gb| similar to quaking II {Mus m... 26 3.2
BQ141784 homologue to GP|23172168|gb| CG13615-PA {Drosophila mel... 26 3.2
CA917046 similar to PIR|T04894|T048 hypothetical protein F18F4.2... 26 3.2
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 26 3.2
BF637847 weakly similar to PIR|T02119|T021 probable DnaJ protein... 25 4.2
AL372330 similar to GP|21322752|dbj cold shock protein-1 {Tritic... 25 5.4
BQ141925 homologue to GP|10727150|gb| Rm62 gene product {alt 1} ... 25 5.4
>TC76533 homologue to PIR|T47865|T47865 transport protein subunit-like -
Arabidopsis thaliana, partial (90%)
Length = 591
Score = 157 bits (396), Expect = 9e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +1
Query: 1 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 58 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 237
Query: 61 GFIAFVAVLHVVGKLYLREA 80
GFIAFVAVLHVVGKLYLREA
Sbjct: 238 GFIAFVAVLHVVGKLYLREA 297
>TC79958 similar to PIR|T47865|T47865 transport protein subunit-like -
Arabidopsis thaliana, partial (90%)
Length = 429
Score = 146 bits (369), Expect = 1e-36
Identities = 73/79 (92%), Positives = 76/79 (95%)
Frame = +1
Query: 1 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
MA GG APQRGSAAATASMRRRKT GGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 28 MASGGAAPQRGSAAATASMRRRKTPGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 207
Query: 61 GFIAFVAVLHVVGKLYLRE 79
GFIAFVA+LHV+GKLYLR+
Sbjct: 208 GFIAFVAILHVIGKLYLRK 264
>BI312088 similar to PIR|T47865|T4786 transport protein subunit-like -
Arabidopsis thaliana, partial (80%)
Length = 663
Score = 134 bits (338), Expect = 5e-33
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +3
Query: 12 SAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHV 71
SAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHV
Sbjct: 3 SAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHV 182
Query: 72 VGKLYLREA 80
VGKLYLREA
Sbjct: 183VGKLYLREA 209
>BQ155502 similar to GP|9757748|dbj| gene_id:MUF9.9~unknown protein
{Arabidopsis thaliana}, partial (56%)
Length = 356
Score = 65.1 bits (157), Expect = 5e-12
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 36 TMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKLYLREA 80
T +FYTDDAPGLKISP VVLVMS+ FI FV LHV GKLY +A
Sbjct: 85 TCXRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYKA 219
>TC89554 similar to GP|13605675|gb|AAK32831.1 AT5g62640/MRG21_6 {Arabidopsis
thaliana}, partial (50%)
Length = 1467
Score = 29.3 bits (64), Expect = 0.29
Identities = 20/63 (31%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
Frame = -2
Query: 1 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTML--QFYTDDAPGLKISPNVVLVM 58
M GGG+ + A ++ + GGG GG A T DDA L +PN ++
Sbjct: 698 MGGGGGSGKDAGKTAPSAELASGSGGGGGGGGTANTQSSDSVAEDDAAVLDEAPNKGILG 519
Query: 59 SIG 61
IG
Sbjct: 518 PIG 510
>BQ141681 weakly similar to GP|15145793|gb| basic proline-rich protein {Sus
scrofa}, partial (9%)
Length = 516
Score = 28.5 bits (62), Expect = 0.49
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAA 34
A GGG P+R A R +AGGGA+GG+A
Sbjct: 450 ARGGGGPRRVRGGAG---RPSGSAGGGAAGGSA 361
>BF521488 weakly similar to GP|18447433|gb RE28280p {Drosophila
melanogaster}, partial (84%)
Length = 470
Score = 28.1 bits (61), Expect = 0.64
Identities = 16/31 (51%), Positives = 19/31 (60%)
Frame = +2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAA 34
GGG GSA+A+AS AGGG GG+A
Sbjct: 299 GGGGGGGGSASASAS---ANAAGGGFRGGSA 382
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 28.1 bits (61), Expect = 0.64
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGG 32
G G P G A A A R R GGG GG
Sbjct: 341 GRGGPGAGGAKAGAKERLRGGGGGGGGGG 255
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = -2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGG 32
GGG G+ A A + R GGG GG
Sbjct: 347 GGGRGGPGAGGAKAGAKERLRGGGGGGGG 261
>BF646401 similar to PIR|A02951|KRMS keratin type II cytoskeletal - mouse
(fragment), partial (5%)
Length = 557
Score = 27.3 bits (59), Expect = 1.1
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -3
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GG QR + T + + GGG+SGG G
Sbjct: 354 GGGQQRSGSGGTINFTVVEEMGGGSSGGRVG 262
>TC86218 weakly similar to GP|14488275|dbj|BAB60898. serine
palmitoyltransferase {Arabidopsis thaliana}, partial
(26%)
Length = 997
Score = 26.6 bits (57), Expect = 1.9
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 2/60 (3%)
Frame = -3
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLK--ISPNVVLVMSIG 61
GGG ++ A + R AGGG GG Q + +A ++ S V+V+ +G
Sbjct: 227 GGG*VEKKEEAIVTGVERMVVAGGGRYGGGRSHRRQRWLQEATRMEGGTSSLFVVVVEVG 48
>CA859196 weakly similar to PIR|C34715|R6BY 60s acidic ribosomal protein
p1-alpha - fission yeast (Schizosaccharomyces pombe),
partial (88%)
Length = 512
Score = 26.2 bits (56), Expect = 2.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAA 34
GGGAP G A+ GGG GGAA
Sbjct: 248 GGGAPMAGGASG----------GGGGGGGAA 310
>TC89191 similar to GP|14272369|emb|CAC40022. bZIP transcription factor
{Arabidopsis thaliana}, partial (42%)
Length = 1158
Score = 26.2 bits (56), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 20 RRRKTAGGGASGGAAG 35
RRR T GGA GGAAG
Sbjct: 945 RRRSTTHGGA*GGAAG 992
>BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (10%)
Length = 1067
Score = 25.8 bits (55), Expect = 3.2
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 4 GGGAPQRGSAAATAS-MRRRKTAGGGASGGAAG 35
GGG RG+ RRK A GG +GG G
Sbjct: 127 GGGREGRGAERGRGEESERRKRARGGGAGGGYG 225
>BQ144499 similar to GP|20378854|gb| similar to quaking II {Mus musculus},
partial (11%)
Length = 1317
Score = 25.8 bits (55), Expect = 3.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +1
Query: 1 MALGGGAPQRGSAAATA---SMRRRKTAGG-GASGGAAG 35
+A GGG G A A ++ RR+ AGG G GG AG
Sbjct: 169 IAAGGGGGGAGCAIAPVCGGALGRRRGAGGAGRGGGRAG 285
>BQ141784 homologue to GP|23172168|gb| CG13615-PA {Drosophila
melanogaster}, partial (7%)
Length = 1282
Score = 25.8 bits (55), Expect = 3.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 8 PQRGSAAATASMRRRKTAGGGASGGAAG 35
P+RG ++RR+ GGG GG G
Sbjct: 85 PRRGKYKE**KIKRRRGRGGGGGGGGGG 2
>CA917046 similar to PIR|T04894|T048 hypothetical protein F18F4.200 -
Arabidopsis thaliana, partial (19%)
Length = 663
Score = 25.8 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +2
Query: 41 YTDDAPGLKISPNVVLVMSIGFIAFVAVLH 70
+T AP LKI + LV ++ F+ + +LH
Sbjct: 227 FTKSAPSLKIKNTLCLVSTLTFLGALNLLH 316
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 25.8 bits (55), Expect = 3.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGG----AAGTMLQ 39
G A G A RRR+ GGGA G AAG +L+
Sbjct: 124 GAAAGGVGGGAGAEGGRRRRARGGGAVAGGMPSAAGGLLR 243
>BF637847 weakly similar to PIR|T02119|T021 probable DnaJ protein [imported]
- Arabidopsis thaliana, partial (18%)
Length = 491
Score = 25.4 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 21 RRKTAGGGASGGAAGTMLQFY 41
R + GGG SGGA G+ +Y
Sbjct: 264 RWRAGGGGGSGGAGGSAGNYY 326
>AL372330 similar to GP|21322752|dbj cold shock protein-1 {Triticum
aestivum}, partial (33%)
Length = 435
Score = 25.0 bits (53), Expect = 5.4
Identities = 10/31 (32%), Positives = 18/31 (57%)
Frame = +2
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GG+ G +++S ++GGG GG++G
Sbjct: 32 GGSSSGGYGGSSSSSYPASSSGGGYGGGSSG 124
>BQ141925 homologue to GP|10727150|gb| Rm62 gene product {alt 1}
[Drosophila melanogaster], partial (3%)
Length = 1059
Score = 25.0 bits (53), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -1
Query: 19 MRRRKTAGGGASGGAAG 35
+ +RK GGG GGA G
Sbjct: 66 LEKRKEGGGGGGGGAGG 16
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,623,211
Number of Sequences: 36976
Number of extensions: 15146
Number of successful extensions: 221
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of query: 80
length of database: 9,014,727
effective HSP length: 56
effective length of query: 24
effective length of database: 6,944,071
effective search space: 166657704
effective search space used: 166657704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147537.6