BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.14 - phase: 0
(176 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW693426 homologue to GP|23307580|dbj similar to serine/threonin... 35 0.015
BG454068 weakly similar to GP|22202804|dbj hypothetical protein~... 30 0.38
BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ... 30 0.65
BI265265 similar to PIR|T01729|T017 mitochondrial solute carrier... 28 2.5
TC90051 28 2.5
TC86739 similar to PIR|T07367|T07367 thioredoxin-like protein CD... 28 2.5
TC88455 weakly similar to GP|18642682|gb|AAL76181.1 Putative dis... 27 4.2
TC86975 weakly similar to GP|8570054|dbj|BAA96759.1 EST D25138(R... 27 5.5
TC88427 similar to GP|21593892|gb|AAM65859.1 unknown {Arabidopsi... 26 7.2
TC81198 similar to GP|21553392|gb|AAM62485.1 unknown {Arabidopsi... 26 9.3
TC87195 similar to GP|16604629|gb|AAL24107.1 putative bZIP prote... 26 9.3
BG448727 similar to PIR|T08924|T08 hypothetical protein T15N24.3... 26 9.3
>AW693426 homologue to GP|23307580|dbj similar to serine/threonine
phosphatase PP7 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 209
Score = 35.0 bits (79), Expect = 0.015
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 86 FLLFTIGTFLSSIDGK--VDSRYLSFLGNLDDVSGFAWGAAVIEDLCQWLDKRKDNNVQY 143
FLL +G L S V+ YL F +LD G+AWG A + L L ++++
Sbjct: 1 FLLCLVGCTLFSDKSTFVVNVAYLEFFRDLDSCGGYAWGVAALAHLYDNLRYASFHHMKS 180
Query: 144 VGGCLIFLQ 152
+ G L +Q
Sbjct: 181 ISGYLTLIQ 207
>BG454068 weakly similar to GP|22202804|dbj hypothetical protein~predicted by
GeneMark.hmm etc. {Oryza sativa (japonica
cultivar-group)}, partial (5%)
Length = 673
Score = 30.4 bits (67), Expect = 0.38
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 4 WNSERHAFEIGSGEIGFSLLDVALILGIPVVGH 36
W+SE +F + GE+ +L D++ +L IPV G+
Sbjct: 360 WHSETSSFHLPVGEMTIALDDISCLLHIPVGGN 458
>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
partial (6%)
Length = 651
Score = 29.6 bits (65), Expect = 0.65
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 2 EAWNSERHAFEIGSGEIGFSLLDVALILGIPVVGHRVELAEEQLFS 47
E W++E +F + GE+ +L DV +L IP+ G ++ E+ + S
Sbjct: 447 ERWHTETSSFHLPMGEMTITLDDVYNLLHIPIHGCMLDHDEQWVSS 310
>BI265265 similar to PIR|T01729|T017 mitochondrial solute carrier protein
homolog - Arabidopsis thaliana, partial (18%)
Length = 666
Score = 27.7 bits (60), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 147 CLIFLQVSLICLSYYHYLLLNCIL 170
C F ++L + Y+H LL+NC +
Sbjct: 218 CFFFFSINLW*IFYFHVLLINCFI 289
>TC90051
Length = 854
Score = 27.7 bits (60), Expect = 2.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 79 SDDFVRSFLLFTIGTFLSSIDGKVDSRYLSFLGNLDDVSGFA 120
SDDF SFLLF + F + G + + L LG L+ + F+
Sbjct: 649 SDDFGTSFLLFFLACF--DVQGLIAASILESLGFLEFFTSFS 530
>TC86739 similar to PIR|T07367|T07367 thioredoxin-like protein CDSP32
chloroplast - potato, partial (77%)
Length = 1077
Score = 27.7 bits (60), Expect = 2.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 57 RAKRKVAMTSLEARLDSIGEDVSDDFVRSFLLFTIGTFLSSIDGKVDSRYL 107
+ R++ T + AR++ D F+R + + TFL DGK+ RY+
Sbjct: 726 KLSRQMNDTVIFARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGKIAGRYV 878
>TC88455 weakly similar to GP|18642682|gb|AAL76181.1 Putative disease
resistance protein RPR1 {Oryza sativa}, partial (11%)
Length = 993
Score = 26.9 bits (58), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (55%)
Frame = +2
Query: 66 SLEARLDSIGEDVSDDFVRSFLLFTIGTFLSSIDGKVDSRY 106
S+E D++ + + + VRS L+FT T L S + ++Y
Sbjct: 569 SIETTSDNLRKVIENSHVRSLLIFTPKTSLKSFVRTIPTKY 691
>TC86975 weakly similar to GP|8570054|dbj|BAA96759.1 EST D25138(R3286)
corresponds to a region of the predicted gene.~Similar
to Pinus taeda, partial (32%)
Length = 1110
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = +2
Query: 151 LQVSLICLSYYHYLLLNCILP 171
L+++L C S+ HY L+CI P
Sbjct: 38 LEINLSCPSHLHY*FLSCIQP 100
>TC88427 similar to GP|21593892|gb|AAM65859.1 unknown {Arabidopsis
thaliana}, partial (65%)
Length = 828
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (49%)
Frame = +1
Query: 147 CLIFLQVSLICLSYYHYLLLNCILPLSYIC 176
CLI+ SL+C + Y + C+ P C
Sbjct: 478 CLIWRVTSLLCCPVFFYCKVYCVSPFKSHC 567
>TC81198 similar to GP|21553392|gb|AAM62485.1 unknown {Arabidopsis
thaliana}, partial (38%)
Length = 913
Score = 25.8 bits (55), Expect = 9.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 139 NNVQYVGGCLIFLQVSLICLSYYHY 163
N + YV CL+ +Q + + LSY+ Y
Sbjct: 824 NFMSYVSPCLLGMQSATLSLSYFFY 898
>TC87195 similar to GP|16604629|gb|AAL24107.1 putative bZIP protein
{Arabidopsis thaliana}, partial (38%)
Length = 1412
Score = 25.8 bits (55), Expect = 9.3
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = +1
Query: 139 NNVQYVGGCLIFLQVSLICLSYYHYLLLNC 168
N ++ G IFL S C Y+ Y +L C
Sbjct: 1183 NQSSFL*GLGIFLAASSYCSYYFEYYILKC 1272
>BG448727 similar to PIR|T08924|T08 hypothetical protein T15N24.30 -
Arabidopsis thaliana, partial (31%)
Length = 684
Score = 25.8 bits (55), Expect = 9.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 139 NNVQYVGGCLIFLQVSLICLSYYHY 163
N + YV CL+ +Q + + LSY+ Y
Sbjct: 309 NFMSYVSPCLLGMQSATLSLSYFFY 383
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,873,459
Number of Sequences: 36976
Number of extensions: 85479
Number of successful extensions: 591
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of query: 176
length of database: 9,014,727
effective HSP length: 90
effective length of query: 86
effective length of database: 5,686,887
effective search space: 489072282
effective search space used: 489072282
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC147537.14