TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147536.4 + phase: 0 /pseudo
         (805 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   129  4e-30
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    97  2e-20
BG585499                                                               62  1e-09
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    60  3e-09
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    55  1e-07
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...    47  3e-05
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    35  0.11

>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  129 bits (324), Expect = 4e-30
 Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
 Frame = -3

Query: 11  MTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYPS 70
           M ++ D+ KAYDR+ WNF+ E L    F    I  I  C+ST+SY  + NG       PS
Sbjct: 568 MAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLINGGPQGRVLPS 389

Query: 71  RGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFAE 130
           RG+RQGDPLSPYLF++C E LS +    +       ++V R  P I+HLLFADD + F +
Sbjct: 388 RGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLLFADDTMFFGK 209

Query: 131 ASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGKY 190
           ++      +L  +D +  +SG+ IN  K+ + FS      + + +       +    GKY
Sbjct: 208 SNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELKIAKEGGTGKY 29

Query: 191 LG-ANIAP 197
           LG  NI P
Sbjct: 28  LGYRNILP 5


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 48/109 (44%), Positives = 71/109 (65%)
 Frame = +1

Query: 69  PSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLF 128
           P +G+RQGDPLSPYLF++C   LS ++  +        ++V R  P I+HLLFADD LLF
Sbjct: 4   PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183

Query: 129 AEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQ 177
           A A++ +A  ++  L  +  +SGQ +N EK++V +S+NV N  +E I Q
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQ 330


>BG585499 
          Length = 792

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
 Frame = +2

Query: 445 RN*HSPVYCPKCLQFAARDLFCCGR*LEDLMELEGSPSYPNLYLVGRSWKDP*QLSS*QG 504
           RN*++ +   + LQF       CG *LE+ + +EG+ SY N Y+V  +W    +LSS*  
Sbjct: 146 RN*YASIQN*EFLQFTCLGPINCGL*LENALGMEGTASYSNFYVVSCTWLYSYKLSS**V 325

Query: 505 GLVSPLLVLVV*ERMKQSFMSFVIVCTPLRCGSDLSRIIT*LISSLL------------- 551
           G                 +  F  +    +C  + S    *L +S+              
Sbjct: 326 G-----------------YEGFGYMSLLWKC*RNCSSCAL*LQASVSGMD*TCAF*LDN* 454

Query: 552 ------IEGVDF*QP**KGDWR*FCYLADYFHDNMLVFVELAKQIYF*NRISKTKQSNTG 605
                 ++G+ F +P* K +W     +A  FHD ML +V+L KQ YF* RISKT+  N  
Sbjct: 455 FLFL**LQGLGFQKP*QKIEWSF*V*VAANFHDYMLAYVDLEKQSYF*RRISKTR*PNLC 634

Query: 606 NSKVY 610
           + K +
Sbjct: 635 HPKFH 649


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 30/91 (32%), Positives = 53/91 (57%)
 Frame = +3

Query: 71  RGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFAE 130
           RG++QGDPL+P+LF++  E +S ++ + V  + ++   V R G  +SHL +ADD L    
Sbjct: 24  RGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIGM 203

Query: 131 ASIEQAHCVLHCLDMFCQSSGQKINREKTQV 161
            +++    +   L  F  +SG K+N  K+ +
Sbjct: 204 PTVDNLWTLKALLQGFEMASGLKVNFHKSSL 296


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 22/47 (46%), Positives = 33/47 (69%)
 Frame = +2

Query: 49  CISTLSYKIMWNGDKTETFYPSRGIRQGDPLSPYLFVICMERLSHII 95
           C+ +  Y ++ N D  +   PSRG++QGD LSPY+F+IC+E LS +I
Sbjct: 104 CVESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLI 244


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 32/60 (52%)
 Frame = +3

Query: 5   KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
           KG      ++IDL KAYD   W F++  ++E  FP K +  +   ++T SY    NGD T
Sbjct: 429 KGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWVMAXLTTASYTFNXNGDLT 608


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 2/178 (1%)
 Frame = +2

Query: 44  KIIHHCISTLSYKIMWNGDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDY 103
           K I  C+ST +  ++ NG  T     S                            V++  
Sbjct: 404 KWIKECVSTATTSVLVNGSPTNVLMKSL---------------------------VQTQL 502

Query: 104 WKPMRVGRYGPLI-SHLLFADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVY 162
           +     G   P++ SHL FA+D LL    +      +   L +F   SG K+N  K+ + 
Sbjct: 503 FTRYSFGVVNPVVVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHKSGLV 682

Query: 163 FSKNVDNHLREDI-IQHTGFNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
                 + L E   +      +V  L  YLG  I         +  I+N+I+ +L+GW
Sbjct: 683 CVNIAPSWLSEAASVLSWKVGKVPFL--YLGMPIEGNSRRLSFWEPIVNRIKARLTGW 850


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.363    0.164    0.635 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,344,321
Number of Sequences: 36976
Number of extensions: 462875
Number of successful extensions: 4518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 3095
Number of HSP's gapped (non-prelim): 1642
length of query: 805
length of database: 9,014,727
effective HSP length: 104
effective length of query: 701
effective length of database: 5,169,223
effective search space: 3623625323
effective search space used: 3623625323
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 62 (28.5 bits)