BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147517.5 + phase: 0
(167 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20 ... 71 2e-13
TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transpor... 67 4e-12
TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC... 65 1e-11
TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Ar... 62 8e-11
AW560126 similar to GP|15292753|gb putative ABC transporter prot... 60 4e-10
TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug re... 59 9e-10
TC86205 similar to PIR|A86289|A86289 probable ABC transporter [i... 59 9e-10
TC81415 weakly similar to PIR|A84509|A84509 probable ABC transpo... 55 1e-08
BQ138652 similar to GP|20522008|d pleiotropic drug resistance li... 53 5e-08
TC92726 similar to PIR|T04229|T04229 ABC-type transport protein ... 52 9e-08
BF649289 weakly similar to GP|16604683|gb putative ABC transport... 49 9e-07
BF635046 similar to PIR|D84680|D84 probable ABC transporter [imp... 43 5e-05
TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 36 0.006
TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10.... 35 0.014
TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 35 0.014
TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transp... 34 0.024
BE205528 similar to GP|12382006|d putative ABC transporter prote... 34 0.031
BF647954 homologue to GP|11094192|db 26S proteasome regulatory p... 34 0.031
TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AA... 34 0.031
TC93190 similar to GP|14209574|dbj|BAB56070. putative ABC-type t... 33 0.053
>TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20
{Arabidopsis thaliana}, partial (44%)
Length = 1366
Score = 70.9 bits (172), Expect = 2e-13
Identities = 41/90 (45%), Positives = 56/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 61 ILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKL--DPKLKFSGRVTYNGHEMSEFVP 118
+LK++SG KP R+ ++GP SGKTTLL LAG+L P+L SG + +NG S
Sbjct: 402 LLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSASPRLHLSGLLEFNGKPSSRNAY 581
Query: 119 QRTAAYVDQNDLHIGELTVRETLAFSARVQ 148
+ AYV Q DL +LTVRETL+ + +Q
Sbjct: 582 K--FAYVRQEDLFFSQLTVRETLSLAIELQ 665
>TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transporter-like
protein {Arabidopsis thaliana}, partial (15%)
Length = 649
Score = 66.6 bits (161), Expect = 4e-12
Identities = 34/89 (38%), Positives = 56/89 (62%)
Frame = +2
Query: 60 NILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSEFVPQ 119
+IL+ ++G KP ++ ++GP GK+TLL LAG+L + +G + NGH+ +
Sbjct: 263 SILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSNTRQTGEILINGHKQE--LSY 436
Query: 120 RTAAYVDQNDLHIGELTVRETLAFSARVQ 148
T+AYV Q+D + LTVRE + +SA++Q
Sbjct: 437 GTSAYVTQDDTLLTTLTVREAVFYSAQLQ 523
>TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC
transporter protein {Arabidopsis thaliana}, partial
(29%)
Length = 977
Score = 65.1 bits (157), Expect = 1e-11
Identities = 34/89 (38%), Positives = 59/89 (66%)
Frame = +2
Query: 60 NILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSEFVPQ 119
+IL+ ++G KP+++ ++GP GK+TLL ALAG+L + SG + NG++ + +
Sbjct: 131 SILQGLTGYAKPAQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQA--LAY 304
Query: 120 RTAAYVDQNDLHIGELTVRETLAFSARVQ 148
T+AYV Q+D + LTV+E + +SA++Q
Sbjct: 305 GTSAYVTQDDTLLTTLTVKEAVYYSAQLQ 391
>TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Arabidopsis
thaliana}, partial (25%)
Length = 663
Score = 62.4 bits (150), Expect = 8e-11
Identities = 33/88 (37%), Positives = 53/88 (59%)
Frame = +2
Query: 61 ILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSEFVPQR 120
+L ++G +P R+ ++GP SGK+TLL LAG+L + +G V NG + +
Sbjct: 200 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGRLAKNVVMTGNVFLNGKKKTP--GYG 373
Query: 121 TAAYVDQNDLHIGELTVRETLAFSARVQ 148
AYV Q D+ +G LTV+ET+ +SA ++
Sbjct: 374 FVAYVTQEDVLLGTLTVKETITYSAHLR 457
>AW560126 similar to GP|15292753|gb putative ABC transporter protein
{Arabidopsis thaliana}, partial (17%)
Length = 727
Score = 60.1 bits (144), Expect = 4e-10
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Frame = +3
Query: 42 VESLLNSLHVLPSRK---QRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP 98
++ L L PS + Q IL +V+GI P + +LGP SGK+TLL +LAG+L
Sbjct: 306 IKKLFTPLESSPSDQRSTQERIILNNVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHT 485
Query: 99 KLKFSGRVTYNGHEMSEFVPQRTAAYVDQNDLHIGELTVRETLAFSARVQ 148
+G + N ++ + +RT +V Q+D+ LTVRETL F + ++
Sbjct: 486 H-NLTGTILANSSKLDRTILRRT-GFVTQDDILYPHLTVRETLVFCSMLR 629
>TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug resistance
like protein {Nicotiana tabacum}, partial (11%)
Length = 757
Score = 58.9 bits (141), Expect = 9e-10
Identities = 33/90 (36%), Positives = 51/90 (56%)
Frame = +3
Query: 56 KQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSE 115
+ RL +LK VSG +P +T L+G +GKTTL+ LAG+ G + +G+ +
Sbjct: 318 EDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IDGDIKVSGYPKKQ 494
Query: 116 FVPQRTAAYVDQNDLHIGELTVRETLAFSA 145
R + Y +QND+H +TV E+L +SA
Sbjct: 495 ETFARISGYCEQNDIHSPHVTVYESLLYSA 584
>TC86205 similar to PIR|A86289|A86289 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (52%)
Length = 2721
Score = 58.9 bits (141), Expect = 9e-10
Identities = 33/90 (36%), Positives = 51/90 (56%)
Frame = +1
Query: 56 KQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSE 115
+ RL +LK VSG +P +T L+G +GKTTL+ LAG+ G + +G+ +
Sbjct: 745 EDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IDGDIKVSGYPKKQ 921
Query: 116 FVPQRTAAYVDQNDLHIGELTVRETLAFSA 145
R + Y +QND+H +TV E+L +SA
Sbjct: 922 ETFARISGYCEQNDIHSPHVTVYESLLYSA 1011
>TC81415 weakly similar to PIR|A84509|A84509 probable ABC transporter
[imported] - Arabidopsis thaliana, partial (13%)
Length = 702
Score = 55.5 bits (132), Expect = 1e-08
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 48 SLHVLPSRKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVT 107
S L + +NILK VS + + S + ++GP +GK+TLL +AG++ K ++
Sbjct: 197 SFKSLTQKPHPVNILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRIKDKDFNPKTIS 376
Query: 108 YNGHEMS-EFVPQRTAAYVDQNDLHIGELTVRETLAFSAR 146
N H MS ++ +V Q D + LTV+ETL F A+
Sbjct: 377 INDHPMSTPSQLRKICGFVSQEDNLLPLLTVKETLLFGAK 496
>BQ138652 similar to GP|20522008|d pleiotropic drug resistance like protein
{Nicotiana tabacum}, partial (15%)
Length = 670
Score = 53.1 bits (126), Expect = 5e-08
Identities = 24/26 (92%), Positives = 26/26 (99%)
Frame = +2
Query: 129 DLHIGELTVRETLAFSARVQGVGPQY 154
DLHIGE+TVRETLAFSARVQGVGP+Y
Sbjct: 2 DLHIGEMTVRETLAFSARVQGVGPRY 79
>TC92726 similar to PIR|T04229|T04229 ABC-type transport protein F14M19.30 -
Arabidopsis thaliana, partial (20%)
Length = 585
Score = 52.4 bits (124), Expect = 9e-08
Identities = 34/86 (39%), Positives = 51/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 61 ILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSE-FVPQ 119
ILKDVS PS + ++GP +GK+TLL L+ + +L SG ++ N ++ +
Sbjct: 187 ILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSAR---RLPLSGTLSLNSSPITNPSTFR 357
Query: 120 RTAAYVDQNDLHIGELTVRETLAFSA 145
+ +AYV Q+D + LTV ET AFSA
Sbjct: 358 KLSAYVPQHDACLPMLTVSETFAFSA 435
>BF649289 weakly similar to GP|16604683|gb putative ABC transporter protein
{Arabidopsis thaliana}, partial (12%)
Length = 654
Score = 48.9 bits (115), Expect = 9e-07
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +3
Query: 1 MDRVGIDLPTIEVRFEHLNIEAEAHVGSISLPTFTN 36
+D+VGI LPT+EVRF++L +EA++ VGS +LPT N
Sbjct: 543 IDKVGIRLPTVEVRFKNLTVEADSFVGSXALPTLPN 650
>BF635046 similar to PIR|D84680|D84 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (21%)
Length = 654
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +1
Query: 55 RKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP 98
RK ++K +G P +T+++GP SGK+TLL A+AG+L P
Sbjct: 523 RKYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRLHP 654
>TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22 {Arabidopsis
thaliana}, partial (74%)
Length = 2270
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/48 (43%), Positives = 27/48 (55%)
Frame = +1
Query: 46 LNSLHVLPSRKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 93
L L +LP R+ L G++KP R LL GPP +GKT L A+A
Sbjct: 1750 LQELVMLPLRRPDLF----TGGLLKPCRGILLFGPPGTGKTMLAKAIA 1881
>TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10.1
[imported] - Arabidopsis thaliana, partial (72%)
Length = 1572
Score = 35.0 bits (79), Expect = 0.014
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 42 VESLLNSLHVLPSRKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 93
V+ L L +LP R+ L +++P + LL GPP +GKT L ALA
Sbjct: 944 VKKALQELVILPMRRPELF---SHGNLLRPCKGILLFGPPGTGKTLLAKALA 1090
>TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22
{Arabidopsis thaliana}, partial (39%)
Length = 1514
Score = 35.0 bits (79), Expect = 0.014
Identities = 21/54 (38%), Positives = 31/54 (56%)
Frame = +1
Query: 42 VESLLNSLHVLPSRKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGK 95
V+ L +LP R R ++ K G++KP + LL GPP +GKT L A+A +
Sbjct: 862 VKESLQEAVMLPLR--RPDLFKG-DGVLKPCKGVLLFGPPGTGKTMLAKAIANE 1014
>TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transporter
protein {Arabidopsis thaliana}, partial (10%)
Length = 799
Score = 34.3 bits (77), Expect = 0.024
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = +3
Query: 60 NILKDVSGIIKPSRMTLLLGPPSSGKTTLL 89
N+L++++G +P T L+GP SGK+TLL
Sbjct: 702 NVLENLTGYAEPGYXTALMGPSGSGKSTLL 791
>BE205528 similar to GP|12382006|d putative ABC transporter protein {Oryza
sativa (japonica cultivar-group)}, partial (14%)
Length = 617
Score = 33.9 bits (76), Expect = 0.031
Identities = 18/59 (30%), Positives = 32/59 (53%)
Frame = +1
Query: 104 GRVTYNGHEMSEFVPQRTAAYVDQNDLHIGELTVRETLAFSARVQGVGPQYGWSTRFLY 162
G +T +G + R + Y +QND+H +TV E+L +SA ++ + P TR ++
Sbjct: 10 GNITISGFPKKQETFARISGYCEQNDIHSPYVTVYESLLYSAWLR-LSPDINAETRKMF 183
>BF647954 homologue to GP|11094192|db 26S proteasome regulatory particle
triple-A ATPase subunit4 {Oryza sativa (japonica
cultivar-group)}, partial (53%)
Length = 649
Score = 33.9 bits (76), Expect = 0.031
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +2
Query: 69 IKPSRMTLLLGPPSSGKTTLLLALAGKLD 97
IKP + LL GPP +GKT L A+A +D
Sbjct: 32 IKPPKGVLLYGPPGTGKTLLARAIASNID 118
>TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AAA-ATPase
subunit RPT4a-like protein {Arabidopsis thaliana},
complete
Length = 1640
Score = 33.9 bits (76), Expect = 0.031
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +2
Query: 69 IKPSRMTLLLGPPSSGKTTLLLALAGKLD 97
IKP + LL GPP +GKT L A+A +D
Sbjct: 578 IKPPKGVLLYGPPGTGKTLLARAIASNID 664
>TC93190 similar to GP|14209574|dbj|BAB56070. putative ABC-type transport
protein {Oryza sativa (japonica cultivar-group)},
partial (52%)
Length = 667
Score = 33.1 bits (74), Expect = 0.053
Identities = 18/47 (38%), Positives = 25/47 (52%)
Frame = +2
Query: 52 LPSRKQRLNILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP 98
L + + +L+D S I + +LLGP GK+TLL LAG P
Sbjct: 173 LQGKLRMCTVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAGLFTP 313
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,494,166
Number of Sequences: 36976
Number of extensions: 54523
Number of successful extensions: 378
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of query: 167
length of database: 9,014,727
effective HSP length: 89
effective length of query: 78
effective length of database: 5,723,863
effective search space: 446461314
effective search space used: 446461314
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC147517.5