BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147497.3 - phase: 0
(382 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci... 325 2e-89
AL366725 263 6e-71
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 50 2e-06
TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-... 49 4e-06
TC82733 similar to GP|10177404|dbj|BAB10535. gene_id:K24M7.12~pi... 48 6e-06
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir... 47 2e-05
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO... 46 3e-05
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch... 44 1e-04
TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar... 43 2e-04
BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.... 35 0.037
TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4.... 35 0.048
TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein... 34 0.11
BG450974 similar to PIR|T05112|T05 splicing factor 9G8-like SR p... 33 0.18
TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 32 0.41
TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iride... 32 0.41
TC84481 similar to GP|11875626|gb|AAG40731.1 XRN4 {Arabidopsis t... 30 2.0
TC83030 weakly similar to GP|18855061|gb|AAL79753.1 putative RNA... 29 2.6
TC90708 weakly similar to PIR|S26703|S26703 dnaJ protein homolog... 29 3.5
TC89153 similar to GP|18855061|gb|AAL79753.1 putative RNA helica... 28 5.9
TC87755 similar to PIR|S52657|S52657 seed biotin-containing prot... 28 5.9
>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
arietinum}, partial (8%)
Length = 516
Score = 325 bits (833), Expect = 2e-89
Identities = 159/171 (92%), Positives = 164/171 (94%)
Frame = +2
Query: 1 MTGSSDDALVAALEAVAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWL 60
MTGSSD ALVAALEAVAQAVQQ PKV+TGSDGT+MLE FLRNHPPTFKGRY PDGA KWL
Sbjct: 2 MTGSSDAALVAALEAVAQAVQQLPKVDTGSDGTRMLETFLRNHPPTFKGRYAPDGA*KWL 181
Query: 61 KEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRY 120
KEIERIFRVMQC E QKV+FGTHMLAEEADDWWISLLPVLEQDDAVVTWAMF+KEFLGRY
Sbjct: 182 KEIERIFRVMQCFETQKVQFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRY 361
Query: 121 FPEDVRGKKKIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCI 171
FPEDVRGKK+IEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCI
Sbjct: 362 FPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCI 514
>AL366725
Length = 485
Score = 263 bits (673), Expect = 6e-71
Identities = 118/160 (73%), Positives = 140/160 (86%)
Frame = +2
Query: 156 FYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYELVNRCRIYQEDTKAHYKIMS 215
FYPHY+AETAEFSKCIKFENGLR DIKRAIGYQQ+RVF +LVN CRIY+EDTKAH K+++
Sbjct: 5 FYPHYAAETAEFSKCIKFENGLRPDIKRAIGYQQLRVFPDLVNTCRIYEEDTKAHDKVVN 184
Query: 216 ERRGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDR 275
ER+ KGQ +RPKPYSAPADKGKQ+M DDRRPK++DA EIVC+ GEKGHKSNVC ++ +
Sbjct: 185 ERKTKGQ*SRPKPYSAPADKGKQRMVDDRRPKKKDAPAEIVCFNYGEKGHKSNVCPKEIK 364
Query: 276 KCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
KC RC +KGH +A+CKR DIVC+NCN EGHI SQC +PK+
Sbjct: 365 KCVRCDKKGHIVADCKRNDIVCFNCNEEGHIGSQCKQPKR 484
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 49.7 bits (117), Expect = 2e-06
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = +1
Query: 244 RRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGE 303
RR RR + +C C GH C + C C GH +EC + C+NC
Sbjct: 385 RRDSRRGFSQDNLCKNCKRPGHYVRECP-NVAVCHNCSLPGHIASECSTKSL-CWNCKEP 558
Query: 304 GHISSQCPEPKKTRTGGK----VFALTGTQTPNEDRLIRGTCF 342
GH++S CP T GK T Q P D + C+
Sbjct: 559 GHMASSCPNEGICHTCGKAGHRARECTVPQKPPGDLRLCNNCY 687
Score = 47.4 bits (111), Expect = 9e-06
Identities = 23/65 (35%), Positives = 34/65 (51%), Gaps = 6/65 (9%)
Frame = +1
Query: 256 VCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECK-----RGDI-VCYNCNGEGHISSQ 309
+C+ C E GH ++ C + C CG+ GH EC GD+ +C NC +GHI+ +
Sbjct: 535 LCWNCKEPGHMASSCPNEGI-CHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVE 711
Query: 310 CPEPK 314
C K
Sbjct: 712 CTNEK 726
Score = 45.4 bits (106), Expect = 4e-05
Identities = 24/83 (28%), Positives = 35/83 (41%), Gaps = 24/83 (28%)
Frame = +1
Query: 254 EIVCYKCGEKGHKSNVCG------RDDRKCFRCGQKGHSLAECKR--------------- 292
E +C+ CG+ GH++ C D R C C ++GH EC
Sbjct: 586 EGICHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLAR 765
Query: 293 ---GDIVCYNCNGEGHISSQCPE 312
D +C CN GH++ QCP+
Sbjct: 766 DCPNDPICNLCNISGHVARQCPK 834
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 23/86 (26%)
Frame = +1
Query: 249 RDAHVEIVCYKCGEKGH------KSNVCG------------RD----DRKCFRCGQKGHS 286
RD + +C C GH KSNV G RD D C C Q GH
Sbjct: 763 RDCPNDPICNLCNISGHVARQCPKSNVIGDRGGGGSLRGGYRDGGFRDVVCRSCQQFGHM 942
Query: 287 LAECKRGDI-VCYNCNGEGHISSQCP 311
+C G + +C NC G GH + +CP
Sbjct: 943 SRDCMGGPLMICQNCGGRGHQAYECP 1020
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 254 EIVCYKCGEKGHKSNVC-GRDDRKCFRCGQKGHSLAECKRGDIV 296
++VC C + GH S C G C CG +GH EC G V
Sbjct: 904 DVVCRSCQQFGHMSRDCMGGPLMICQNCGGRGHQAYECPSGRFV 1035
>TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
aestivum}, partial (39%)
Length = 630
Score = 48.5 bits (114), Expect = 4e-06
Identities = 26/88 (29%), Positives = 31/88 (34%), Gaps = 31/88 (35%)
Frame = +3
Query: 257 CYKCGEKGHKSNVCGRDDRK-----------------CFRCGQKGHSLAECKR------- 292
CY CG+ GH + C R DR C+ CG H +C R
Sbjct: 351 CYTCGDTGHIARDCDRSDRNDRNDRSGGGGGGDRDRACYTCGSFEHFARDCMRGGGNNNN 530
Query: 293 -------GDIVCYNCNGEGHISSQCPEP 313
G CY C G GHI+ C P
Sbjct: 531 GGGGYGGGGTSCYRCGGVGHIARDCATP 614
Score = 28.9 bits (63), Expect = 3.5
Identities = 20/64 (31%), Positives = 25/64 (38%), Gaps = 4/64 (6%)
Frame = +3
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCP----EPKKT 316
G KG V R D G +G E + G CY C GHI+ C +
Sbjct: 249 GPKGEPLQV--RQDNHGGGGGGRGFRGGERRNGGGGCYTCGDTGHIARDCDRSDRNDRND 422
Query: 317 RTGG 320
R+GG
Sbjct: 423 RSGG 434
>TC82733 similar to GP|10177404|dbj|BAB10535.
gene_id:K24M7.12~pir||S42136~similar to unknown protein
{Arabidopsis thaliana}, partial (57%)
Length = 710
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Frame = +3
Query: 256 VCYKCGEKGHKSNVC----GRDDRKC-FRCGQKGHSLAEC----KRGDIV---CYNCNGE 303
+C +C +GH++ C ++D K + CG GHSLA C + G + C+ C +
Sbjct: 354 ICLRCRRRGHRAQNCPDGGSKEDFKY*YNCGDNGHSLANCPHPLQEGGTMFAQCFVCKEQ 533
Query: 304 GHISSQCPE 312
GH+S CP+
Sbjct: 534 GHLSKNCPK 560
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 10/78 (12%)
Frame = +3
Query: 257 CYKCGEKGHKSNVCGRD-----DRKCFRCGQKGHSLAECKRGDI-----VCYNCNGEGHI 306
C+ C H + C + ++ C RC ++GH C G YNC GH
Sbjct: 282 CFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGGSKEDFKY*YNCGDNGHS 461
Query: 307 SSQCPEPKKTRTGGKVFA 324
+ CP P + GG +FA
Sbjct: 462 LANCPHP--LQEGGTMFA 509
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Frame = +3
Query: 258 YKCGEKGHKSNVC-------GRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQC 310
Y CG+ GH C G +CF C ++GH C + Y G I C
Sbjct: 435 YNCGDNGHSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGXC 614
>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
(1%)
Length = 726
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/95 (28%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 45 PTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPV--LEQ 102
P F G+ PD WL+ IER+F+ + +E QKV+ L + A WW +L E
Sbjct: 347 PDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLKRKRNCEG 526
Query: 103 DDAVVTWAMFKKEFLGR-----YFPEDVRGKKKIE 132
+ TW +++ + Y+ ++ KK I+
Sbjct: 527 KSKIKTWDKMRQKLTRKYLHPHYYQDNFTQKKNIQ 631
>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
{Encephalitozoon cuniculi}, partial (0%)
Length = 1247
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 2/80 (2%)
Frame = -2
Query: 45 PTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWW--ISLLPVLEQ 102
P F+G PD WL+ +ER+F+ + E QKV+ L + A WW + E
Sbjct: 724 PDFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREG 545
Query: 103 DDAVVTWAMFKKEFLGRYFP 122
+ TW +++ +Y P
Sbjct: 544 KSKIKTWEKMRQKLTRKYLP 485
>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
partial (7%)
Length = 2304
Score = 43.5 bits (101), Expect = 1e-04
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 45 PTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLEQD- 103
P F+G D WL+ IER+F + E QKV+ L + A WW +L +++
Sbjct: 629 PDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREG 808
Query: 104 -DAVVTWAMFKKEFLGRYFP 122
+ TW +++ +Y P
Sbjct: 809 KSKIKTWDKMRQKLTRKYLP 868
>TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
thaliana}, partial (71%)
Length = 974
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/43 (46%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Frame = +2
Query: 276 KCFRCGQKGHSLAECKRGD--IVCYNCNGEGHISSQCP-EPKK 315
+CF CG GH +CK GD CY C GHI C PKK
Sbjct: 356 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKK 484
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 257 CYKCGEKGHKSNVCGRDD--RKCFRCGQKGHSLAECK 291
C+ CG GH + C D KC+RCG++GH CK
Sbjct: 359 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 469
Score = 28.9 bits (63), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 257 CYKCGEKGHKSNVCGRDDRKCFR 279
CY+CGE+GH C +K R
Sbjct: 425 CYRCGERGHIEKNCKNSPKKLSR 493
>BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.5 [imported]
- Arabidopsis thaliana, partial (5%)
Length = 627
Score = 35.4 bits (80), Expect = 0.037
Identities = 22/90 (24%), Positives = 27/90 (29%), Gaps = 35/90 (38%)
Frame = -1
Query: 257 CYKCGEKGHKSNVC----------------------GRDDRKCFRCGQKGHSLAECKRGD 294
C CG H S C G KC++C Q GH + C
Sbjct: 627 CSNCGGSDHSSAQCLHLRNPPEQTAGGAYVNTVSGSGGASGKCYKCQQPGHWASNCPSMS 448
Query: 295 IV-------------CYNCNGEGHISSQCP 311
CY CN GH ++ CP
Sbjct: 447 AANRVSGGSGGASGNCYKCNQPGHWANNCP 358
>TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4.150 -
Arabidopsis thaliana, partial (17%)
Length = 378
Score = 35.0 bits (79), Expect = 0.048
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 20/57 (35%)
Frame = +1
Query: 257 CYKCGEKGHKSNVC--------------------GRDDRKCFRCGQKGHSLAECKRG 293
CY CGE GH + C G C+ CG+ GH +C G
Sbjct: 16 CYNCGESGHMARECTSGGGGGGGRYGGGGGGGGGGGGGGSCYSCGESGHFARDCPTG 186
Score = 33.1 bits (74), Expect = 0.18
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 20/55 (36%)
Frame = +1
Query: 277 CFRCGQKGHSLAECKR--------------------GDIVCYNCNGEGHISSQCP 311
C+ CG+ GH EC G CY+C GH + CP
Sbjct: 16 CYNCGESGHMARECTSGGGGGGGRYGGGGGGGGGGGGGGSCYSCGESGHFARDCP 180
>TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein T26I12.220
- Arabidopsis thaliana, partial (9%)
Length = 756
Score = 33.9 bits (76), Expect = 0.11
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +2
Query: 286 SLAECKRGDIVCYNCNGEGHISSQCPEPK 314
S+A KR + +CY C +GH S+CP P+
Sbjct: 389 SVASGKRKNRMCYGCRQKGHNLSECPNPQ 475
Score = 32.0 bits (71), Expect = 0.41
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 272 RDDRKCFRCGQKGHSLAECKRGDI 295
R +R C+ C QKGH+L+EC I
Sbjct: 407 RKNRMCYGCRQKGHNLSECPNPQI 478
>BG450974 similar to PIR|T05112|T05 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana, partial (54%)
Length = 364
Score = 33.1 bits (74), Expect = 0.18
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +1
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECK 291
G +G G DD KC+ CG+ GH EC+
Sbjct: 271 GGRGGGRGGRGGDDLKCYECGEPGHFARECR 363
>TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana, partial (91%)
Length = 860
Score = 32.0 bits (71), Expect = 0.41
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +3
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECK 291
G +G G D KC+ CG+ GH EC+
Sbjct: 288 GGRGRGGGGGGGSDLKCYECGEPGHFARECR 380
>TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iridescent
virus}, partial (1%)
Length = 772
Score = 32.0 bits (71), Expect = 0.41
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +3
Query: 10 VAALEAVAQAVQQQPKVETGSDGT----------KMLENFLRNHPPTFKGRYDPDGAQKW 59
V A +A+ +A +++ + SD + K L N ++ P F+G PD W
Sbjct: 303 VNAQQAILEAERRRVDDDGSSDSSSSRSSRSHRRKTLMNDIKVDIPDFEGELQPDEFVDW 482
Query: 60 LKEIERIF 67
L+ IER+F
Sbjct: 483 LQAIERVF 506
>TC84481 similar to GP|11875626|gb|AAG40731.1 XRN4 {Arabidopsis thaliana},
partial (23%)
Length = 727
Score = 29.6 bits (65), Expect = 2.0
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 276 KCFRCGQKGHSLAECK 291
KC+ CGQ GH AEC+
Sbjct: 206 KCYMCGQVGHLAAECR 253
>TC83030 weakly similar to GP|18855061|gb|AAL79753.1 putative RNA helicase
{Oryza sativa}, partial (7%)
Length = 624
Score = 29.3 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +1
Query: 277 CFRCGQKGHSLAEC--KRGD 294
CF CG+ GH ++C KRGD
Sbjct: 166 CFTCGESGHRASDCPNKRGD 225
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 8/64 (12%)
Frame = +1
Query: 215 SERRG----KGQQNRPKPYSAPADK----GKQKMGDDRRPKRRDAHVEIVCYKCGEKGHK 266
S RRG K + KP + D G+Q P R A C+ CGE GH+
Sbjct: 25 SSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSSSSPNRSFAGT---CFTCGESGHR 195
Query: 267 SNVC 270
++ C
Sbjct: 196 ASDC 207
>TC90708 weakly similar to PIR|S26703|S26703 dnaJ protein homolog YDJ1 -
yeast (Saccharomyces cerevisiae), partial (43%)
Length = 1098
Score = 28.9 bits (63), Expect = 3.5
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 6/58 (10%)
Frame = +2
Query: 255 IVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDI------VCYNCNGEGHI 306
I+C KC +G K ++C C G + G + VC +CNGEG +
Sbjct: 704 IICSKCEGRGGKEGAV----KRCTGCDGHGMKTMMRQMGPMIQRFQTVCPDCNGEGEM 865
>TC89153 similar to GP|18855061|gb|AAL79753.1 putative RNA helicase {Oryza
sativa}, partial (3%)
Length = 737
Score = 28.1 bits (61), Expect = 5.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 258 YKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAEC 290
Y + N G CF CGQ GH ++C
Sbjct: 90 YSSSNRSSSPNRRGSYGGACFSCGQPGHRASDC 188
>TC87755 similar to PIR|S52657|S52657 seed biotin-containing protein SPB65
[validated] - garden pea, partial (52%)
Length = 1368
Score = 28.1 bits (61), Expect = 5.9
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = +1
Query: 283 KGHSLAECKRGDIVCYNCNGEGHISS 308
K H CK + +CY C GE + S
Sbjct: 133 KRHCFKRCKNCNRICYPCGGESQVCS 210
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,661,926
Number of Sequences: 36976
Number of extensions: 171139
Number of successful extensions: 887
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of query: 382
length of database: 9,014,727
effective HSP length: 98
effective length of query: 284
effective length of database: 5,391,079
effective search space: 1531066436
effective search space used: 1531066436
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC147497.3