TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.9 - phase: 0 
         (125 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86608 homologue to SP|O22860|RL38_ARATH 60S ribosomal protein ...    27  2.1
AW684389 similar to GP|9759091|dbj contains similarity to unknow...    26  3.5
TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [...    26  4.6
TC81329 homologue to GP|20466796|gb|AAM20715.1 unknown protein {...    26  4.6
AW689387 similar to GP|10727986|gb CG18331 gene product {Drosoph...    25  6.0
BQ150793                                                               25  6.0
BF634212 weakly similar to GP|10798748|dbj elicitor inducible ge...    25  7.9
TC91157 weakly similar to GP|16604308|gb|AAL24160.1 At1g31300/T1...    25  7.9

>TC86608 homologue to SP|O22860|RL38_ARATH 60S ribosomal protein L38.
           [Mouse-ear cress] {Arabidopsis thaliana}, complete
          Length = 545

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 12/42 (28%), Positives = 21/42 (49%)
 Frame = +3

Query: 81  LFQAQVIKNESNPKLVDVVIWYCGWIVTVKEKIYVLRVIFVS 122
           LF    +K E NP+  D+ + +C W        Y+  ++F+S
Sbjct: 282 LFCFYFLKLERNPRFCDLELCFCNW--------YLFMIVFLS 383


>AW684389 similar to GP|9759091|dbj contains similarity to unknown
           protein~gb|AAF47871.1~gene_id:MJJ3.6 {Arabidopsis
           thaliana}, partial (16%)
          Length = 656

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -2

Query: 85  QVIKNESNPKLVDVVIWYCGWIVT 108
           ++ +N+SN KL+    WY  WI T
Sbjct: 247 RIARNKSNSKLI---FWYIAWIAT 185


>TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [imported] -
            Arabidopsis thaliana, partial (48%)
          Length = 1221

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = -3

Query: 95   LVDVVIWYCGWIVTVKEKIYVL 116
            L+ ++IW+  W VT   K+YVL
Sbjct: 1045 LLQLIIWHVRWGVTKLGKLYVL 980


>TC81329 homologue to GP|20466796|gb|AAM20715.1 unknown protein {Arabidopsis
           thaliana}, partial (20%)
          Length = 963

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 60  HVFSVDFPGKYQDWAATDPLDLFQAQVIKNE 90
           HVF     GKY+ W  T+   LF+ + I N+
Sbjct: 180 HVFLKRLTGKYRMWCVTEA--LFEGKTISNK 94


>AW689387 similar to GP|10727986|gb CG18331 gene product {Drosophila
           melanogaster}, partial (1%)
          Length = 613

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 5   PKVLMVAEKPSIALSIATVLSHGKMNTRRG 34
           P VL ++    I LSI ++LS  +  TR+G
Sbjct: 290 PTVLSISSAIIIPLSITSILSKDQSETRKG 201


>BQ150793 
          Length = 390

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 101 WYCGWIVTVKEKIYVLRVIFVSLSF 125
           WYC   V + E I  +RVI++ LS+
Sbjct: 27  WYCHTCVMMGEVIRSIRVIWIPLSW 101


>BF634212 weakly similar to GP|10798748|dbj elicitor inducible gene product
           EIG-I24 {Nicotiana tabacum}, partial (14%)
          Length = 385

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 20  IATVLSHGKMNTRRGSTEVHE 40
           + TV  +GKM  RRGS  + E
Sbjct: 361 VVTVQQNGKMGRRRGSLRIRE 299


>TC91157 weakly similar to GP|16604308|gb|AAL24160.1 At1g31300/T19E23_12
           {Arabidopsis thaliana}, partial (50%)
          Length = 763

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (49%)
 Frame = -1

Query: 90  ESNPKLVDVVIWYCGWIVTVKEKIYVLRVIFVSL 123
           E N K  D+V+    WIV +    + +R I V L
Sbjct: 502 EQNTKYKDIVVIKMEWIVDIARLFHSIRWILVRL 401


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,728
Number of Sequences: 36976
Number of extensions: 39616
Number of successful extensions: 213
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of query: 125
length of database: 9,014,727
effective HSP length: 84
effective length of query: 41
effective length of database: 5,908,743
effective search space: 242258463
effective search space used: 242258463
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)