TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.13 + phase: 0 /pseudo
         (575 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC81168 similar to GP|17979303|gb|AAL49877.1 unknown protein {Ar...    30  2.5
AW288063                                                               29  4.3
TC92411 weakly similar to GP|1247335|emb|CAA01820.1 pPLC4 {Popul...    29  4.3

>TC81168 similar to GP|17979303|gb|AAL49877.1 unknown protein {Arabidopsis
           thaliana}, partial (34%)
          Length = 489

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
 Frame = +1

Query: 185 IRTCCFSTATFMSILVLVFNTLSSVHPKTLSTDQSWVAVTM---------ESRKSLRHWH 235
           +R CC    +   +++L++    +      +    WV V +         +  + ++  H
Sbjct: 40  LRGCCCRCFS*KLMILLLWGCCENRKVSNFALKSKWVLVFLIDYA*IWSYDGMERVQVLH 219

Query: 236 SFLDFTSFHQ*ST*RDFKDHSL*YLYNLCCQYYSVCSFF 274
           SF   T F       DF      + Y LCC YY +CSFF
Sbjct: 220 SFTR-TWFDY-----DFVGSWCCWCYLLCCCYYQLCSFF 318


>AW288063 
          Length = 116

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 139 ICLLAQLAEEEGQEHDIISVLNLMATMI 166
           IC+L+ L+EE G  HDI+S  N   T+I
Sbjct: 104 ICVLSFLSEEIGTVHDIVSCFNQE*TLI 21


>TC92411 weakly similar to GP|1247335|emb|CAA01820.1 pPLC4 {Populus
           balsamifera subsp. trichocarpa x Populus deltoides},
           partial (44%)
          Length = 896

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 214 LSTDQSWVAVTMESRKSLRHWHSFLDF 240
           L+T  SW+ V  E RK+L+ + + LDF
Sbjct: 578 LTTSCSWIVVLKEQRKNLKSYANVLDF 658


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.349    0.152    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,080,277
Number of Sequences: 36976
Number of extensions: 369401
Number of successful extensions: 3259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1832
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 2045
length of query: 575
length of database: 9,014,727
effective HSP length: 101
effective length of query: 474
effective length of database: 5,280,151
effective search space: 2502791574
effective search space used: 2502791574
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 61 (28.1 bits)