BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147484.10 - phase: 0 /pseudo
(1011 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ149472 similar to GP|8745333|gb| phragmoplast-associated kines... 244 9e-65
TC88934 similar to PIR|T00434|T00434 probable kinesin heavy chai... 137 3e-32
TC80825 similar to PIR|F84614|F84614 probable kinesin heavy chai... 133 3e-31
TC79642 similar to PIR|T07397|T07397 kinesin heavy chain-like pr... 130 3e-30
TC80383 similar to PIR|C85065|C85065 kinesin-like protein [impor... 114 2e-25
AW689037 similar to GP|10177316|d kinesin-like protein {Arabidop... 111 1e-24
TC83691 similar to PIR|T00434|T00434 probable kinesin heavy chai... 85 2e-23
BE999515 similar to PIR|T07397|T0 kinesin heavy chain-like prote... 105 1e-22
TC82643 similar to GP|10998143|dbj|BAB03114. kinesin (centromere... 92 1e-18
AJ499156 similar to GP|10176794|db kinesin-like protein {Arabido... 86 9e-17
TC80343 similar to PIR|C96661|C96661 kinesin-like protein 73641... 79 7e-15
AW692096 homologue to GP|10140692|gb kinesin-like protein {Oryza... 76 7e-14
AL377028 SP|O23826|K12 125 kDa kinesin-related protein. [Common ... 74 4e-13
TC81646 similar to GP|13536981|dbj|BAB40709. BY-2 kinesin-like p... 71 2e-12
BG583316 homologue to GP|11994617|db contains similarity to kine... 55 1e-07
BI272139 similar to PIR|C96661|C9 kinesin-like protein 73641-79... 50 3e-06
CA989870 similar to GP|18201934|g kinesin-like protein heavy cha... 39 0.010
TC88497 similar to GP|11994617|dbj|BAB02754. contains similarity... 39 0.013
TC76957 similar to PIR|S68805|S68805 pectin acetylesterase (EC 3... 32 0.94
CA917167 similar to GP|7270878|emb kinesin like protein {Arabido... 31 2.1
>BQ149472 similar to GP|8745333|gb| phragmoplast-associated kinesin-related
protein 1 {Arabidopsis thaliana}, partial (6%)
Length = 619
Score = 244 bits (624), Expect = 9e-65
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = +2
Query: 880 RAPSPVEGYCRSSASCR*TAFPS*RS*RIRH*CTETGYGCRAESCKGLPTN**VEEKT*E 939
RAPSPVEGYCRSSASCR*TAFPS*RS*RIRH*CTETGYGCRAESCKGLPTN**VEEKT*E
Sbjct: 2 RAPSPVEGYCRSSASCR*TAFPS*RS*RIRH*CTETGYGCRAESCKGLPTN**VEEKT*E 181
Query: 940 GGCIT**ACFRSTFAEEIDTTSL**CCHAQL***LKGATLC**V*AF**YCRRW*ARKIG 999
GGCIT**ACFRSTFAEEIDTTSL**CCHAQL***LKGATLC**V*AF**YCRRW*ARKIG
Sbjct: 182 GGCIT**ACFRSTFAEEIDTTSL**CCHAQL***LKGATLC**V*AF**YCRRW*ARKIG 361
Query: 1000 RTILVL*LRQMQ 1011
RTILVL*LRQMQ
Sbjct: 362 RTILVL*LRQMQ 397
>TC88934 similar to PIR|T00434|T00434 probable kinesin heavy chain
[imported] - Arabidopsis thaliana, partial (49%)
Length = 2193
Score = 137 bits (344), Expect = 3e-32
Identities = 85/184 (46%), Positives = 118/184 (63%), Gaps = 2/184 (1%)
Frame = +3
Query: 1 IYNEQITDLL--DPSQRNLQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGA 58
IYNEQ+ DLL D + + L+IR + + G+ V + + QVS+ DV +L+ G NR +GA
Sbjct: 489 IYNEQVRDLLVTDGTNKRLEIRSNSQRGLSVPDASLVQVSSTNDVIELMNLGHKNRAVGA 668
Query: 59 TSINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLKE 118
T++N SSRSH+ T V+ R + V R ++LVDLAGSER + A G+RLKE
Sbjct: 669 TALNDRSSRSHSCLTVHVQGR-DLTSGAVLR---GCMHLVDLAGSERVDKSEATGDRLKE 836
Query: 119 AGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPA 178
A +IN+SLS LG++I LA+ K +H+PYR+S+LT LLQ+SLGG AK M ISP
Sbjct: 837 AQHINKSLSALGDVIASLAQ-----KNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPE 1001
Query: 179 QSLV 182
+ V
Sbjct: 1002ANAV 1013
>TC80825 similar to PIR|F84614|F84614 probable kinesin heavy chain
[imported] - Arabidopsis thaliana, partial (16%)
Length = 1771
Score = 133 bits (335), Expect = 3e-31
Identities = 80/179 (44%), Positives = 114/179 (62%), Gaps = 2/179 (1%)
Frame = +3
Query: 2 YNEQITDLL--DPSQRNLQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGAT 59
YNEQI DLL P+ + L+I+++ + +V + E +V + DV +L G + R +G+
Sbjct: 60 YNEQIRDLLATGPASKRLEIKQNYEGHHHVPGVVEAKVDNISDVWTVLQAGSNARAVGSN 239
Query: 60 SINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLKEA 119
++N SSRSH + +V++ K+ +G S++ LVDLAGSER T GERLKEA
Sbjct: 240 NVNEHSSRSHCMLCIMVKT--KNLMNG--ECTKSKLWLVDLAGSERLAKTDVQGERLKEA 407
Query: 120 GNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPA 178
NINRSLS LG++I+ LA K HIPYR+S+LT LLQ+SLGG++K M ISP+
Sbjct: 408 QNINRSLSALGDVISALA-----AKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPS 569
>TC79642 similar to PIR|T07397|T07397 kinesin heavy chain-like protein (clone
PKCBP) - potato, partial (42%)
Length = 2321
Score = 130 bits (327), Expect = 3e-30
Identities = 76/183 (41%), Positives = 112/183 (60%), Gaps = 3/183 (1%)
Frame = +3
Query: 1 IYNEQITDLLDPSQRN---LQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIG 57
+Y + + DLL P L I++D V VEN+T +ST++++ ++ KG R I
Sbjct: 1350 LYQDTLIDLLLPKNAKHSRLDIKKDSTGMVVVENVTVMSISTIEELNYIIQKGSERRHIS 1529
Query: 58 ATSINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLK 117
T +N ESSRSH + + VVES + V+R +++ VDLAGSER K +G+ G +LK
Sbjct: 1530 GTQMNEESSRSHLILSIVVES-TNLQSQSVAR---GKLSFVDLAGSERVKKSGSMGSQLK 1697
Query: 118 EAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISP 177
EA +IN+SLS LG++I+ L+ Q H PYR+ +LT L+ +SLGGNAK M +SP
Sbjct: 1698 EAQSINKSLSALGDVISALSSGGQ-----HTPYRNHKLTMLMSDSLGGNAKTLMFVNVSP 1862
Query: 178 AQS 180
+S
Sbjct: 1863 IES 1871
>TC80383 similar to PIR|C85065|C85065 kinesin-like protein [imported] -
Arabidopsis thaliana, partial (26%)
Length = 897
Score = 114 bits (285), Expect = 2e-25
Identities = 67/166 (40%), Positives = 99/166 (59%)
Frame = +1
Query: 15 RNLQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGATSINSESSRSHTVFTC 74
+ I+ D V +LT V ++K+V LL + ++R +G T +N +SSRSH VFT
Sbjct: 43 KQYSIKHDASGNTLVSDLTVVDVESVKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTL 222
Query: 75 VVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLIN 134
+ +S V +NL+DLAGSER +G+ G+RLKE IN+SLS L ++I
Sbjct: 223 RIYGVNESTDQQVQGV----LNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIF 390
Query: 135 ILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPAQS 180
LA+ K+ HIP+R+S+LT+LLQ LGG++K M I+P Q+
Sbjct: 391 ALAK-----KEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNIAPDQA 513
>AW689037 similar to GP|10177316|d kinesin-like protein {Arabidopsis
thaliana}, partial (13%)
Length = 662
Score = 111 bits (278), Expect = 1e-24
Identities = 70/201 (34%), Positives = 114/201 (55%), Gaps = 19/201 (9%)
Frame = +3
Query: 1 IYNEQITDLLDPSQRN----------------LQIREDVKSGVYVENLTEEQVSTMKDVT 44
I+ E++ DLLDP+ +QIRE + G+ + +TE +V T ++++
Sbjct: 72 IFKEEVFDLLDPNASKGESVCNAKFAAPARVPIQIRETLSGGITLAGVTEPEVKTKEEMS 251
Query: 45 QLLLKGLSNRRIGATSINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSE 104
L +G +R G+T++NS+SSRSH +FT +E K+ D + ++++LVDLAGSE
Sbjct: 252 SYLSRGSMSRATGSTNMNSQSSRSHAIFTITMEQ--KNGDDVL----CAKLHLVDLAGSE 413
Query: 105 RQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLT---FLLQE 161
R K TGA G RLKE +IN+ L LGN+I+ L + + ++R P SR+ +
Sbjct: 414 RAKRTGADGMRLKEGIHINKGLLTLGNVISALGD--ERRRKRRRPCTVSRIAS*HAFCRI 587
Query: 162 SLGGNAKLAMVCAISPAQSLV 182
SLG N+ M+ + PA +++
Sbjct: 588 SLGXNSXTVMIACVXPADTML 650
>TC83691 similar to PIR|T00434|T00434 probable kinesin heavy chain
[imported] - Arabidopsis thaliana, partial (22%)
Length = 1056
Score = 84.7 bits (208), Expect(2) = 2e-23
Identities = 47/83 (56%), Positives = 59/83 (70%)
Frame = +1
Query: 95 INLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSR 154
++LVDLAGSER T A G+RLKEA +IN+SLS LG++I LA K H+PYR+S+
Sbjct: 187 MHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVIASLAH-----KNAHVPYRNSK 351
Query: 155 LTFLLQESLGGNAKLAMVCAISP 177
LT LLQ++LGG AK M ISP
Sbjct: 352 LTQLLQDALGGQAKTLMFVHISP 420
Score = 43.5 bits (101), Expect(2) = 2e-23
Identities = 22/53 (41%), Positives = 32/53 (59%)
Frame = +3
Query: 17 LQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGATSINSESSRSH 69
L+IR +G+ V + + VST DV L+ G NR +G+T++N SSRSH
Sbjct: 6 LEIRNSSNNGINVPDASLVPVSTTSDVITLMNLGHKNRAVGSTAMNDRSSRSH 164
>BE999515 similar to PIR|T07397|T0 kinesin heavy chain-like protein (clone
PKCBP) - potato, partial (13%)
Length = 526
Score = 105 bits (261), Expect = 1e-22
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Frame = +2
Query: 49 KGLSNRRIGATSINSESSRSHTVFTCVVES---RCKSAADGVSRFKTSRINLVDLAGSER 105
+G R T +N ESSRSH + + V+ES + +S A G +++ VDLAGSER
Sbjct: 5 RGSERRHTAGTQMNEESSRSHRILSIVIESVNLQSQSTARG-------KLSFVDLAGSER 163
Query: 106 QKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGG 165
K +G+ G +LKEA +IN+SLS LG++I+ L+ Q HIPYR+ +LT L+ +SLGG
Sbjct: 164 IKKSGSEGSQLKEAQSINKSLSALGDVISALSSGGQ-----HIPYRNHKLTMLMSDSLGG 328
Query: 166 NAKLAMVCAISPAQS 180
NAK M +SP +S
Sbjct: 329 NAKTLMFVNVSPVES 373
>TC82643 similar to GP|10998143|dbj|BAB03114. kinesin (centromere protein)
like heavy chain-like protein {Arabidopsis thaliana},
partial (25%)
Length = 880
Score = 92.0 bits (227), Expect = 1e-18
Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Frame = +2
Query: 62 NSESSRSHTVFTCVVESR-CKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLKEAG 120
N SSRSHT+FT VES C +G + S++NL+DLAGSE K+ G R +E
Sbjct: 2 NLLSSRSHTIFTLTVESSPCGEYIEGEA-VTLSQLNLIDLAGSESSKAE-TIGMRRREGS 175
Query: 121 NINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPAQS 180
IN+SL LG +I+ L E K HIPYRDS+LT +LQ SL G+ +++++C ++P+ S
Sbjct: 176 YINKSLLTLGTVISKLTEA----KASHIPYRDSKLTRVLQSSLSGHGRVSLICTVTPSSS 343
>AJ499156 similar to GP|10176794|db kinesin-like protein {Arabidopsis
thaliana}, partial (22%)
Length = 678
Score = 85.5 bits (210), Expect = 9e-17
Identities = 60/167 (35%), Positives = 86/167 (50%), Gaps = 29/167 (17%)
Frame = +1
Query: 43 VTQLLLKGLSNRRIGATSINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAG 102
V LL + ++R +G T +N +SSRSH VFT + +S V +NL+DLAG
Sbjct: 4 VAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGV----LNLIDLAG 171
Query: 103 SERQKSTGAAGERLKEAG-----------------------------NINRSLSQLGNLI 133
SER +G+ G+RLKE IN+SLS L ++I
Sbjct: 172 SERLSRSGSTGDRLKETQVCKTIRCFLFYTVLLL*FIIIQTSFTCN*AINKSLSSLSDVI 351
Query: 134 NILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPAQS 180
LA+ K+ HIP+R+S+LT+LLQ LGG++K M I+P Q+
Sbjct: 352 FALAK-----KEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNIAPDQA 477
>TC80343 similar to PIR|C96661|C96661 kinesin-like protein 73641-79546
[imported] - Arabidopsis thaliana, partial (17%)
Length = 1406
Score = 79.3 bits (194), Expect = 7e-15
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +3
Query: 95 INLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSR 154
++LVDLAGSER + A G+RLKEA N+SLS LG++I LA+ K H+PYR+S+
Sbjct: 30 LHLVDLAGSERVDRSEATGDRLKEAHXXNKSLSALGDVIFALAQ-----KSPHVPYRNSK 194
Query: 155 LTFLLQESLGGNAKLAMVCAISP 177
LT LLQ SLGG AK M ++P
Sbjct: 195 LTQLLQSSLGGQAKTLMFVQLNP 263
>AW692096 homologue to GP|10140692|gb kinesin-like protein {Oryza sativa
(japonica cultivar-group)}, partial (14%)
Length = 387
Score = 75.9 bits (185), Expect = 7e-14
Identities = 42/83 (50%), Positives = 54/83 (64%)
Frame = +1
Query: 98 VDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTF 157
+DLAGSE K T G R KE IN+SL LG +I L+E GK H+PYRDS+LT
Sbjct: 1 IDLAGSESSK-TETTGLRRKEGSYINKSLLTLGTVIGKLSE----GKASHVPYRDSKLTR 165
Query: 158 LLQESLGGNAKLAMVCAISPAQS 180
LLQ SL G+ ++++C I+PA S
Sbjct: 166 LLQSSLSGHGHVSLICTITPASS 234
>AL377028 SP|O23826|K12 125 kDa kinesin-related protein. [Common tobacco]
{Nicotiana tabacum}, partial (7%)
Length = 223
Score = 73.6 bits (179), Expect = 4e-13
Identities = 41/75 (54%), Positives = 50/75 (66%)
Frame = +2
Query: 91 KTSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPY 150
K ++NLVDLAGSE +GA R +EAG IN+SL LG +IN L E HIPY
Sbjct: 14 KCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HLGHIPY 178
Query: 151 RDSRLTFLLQESLGG 165
RDS+LT LL++SLGG
Sbjct: 179 RDSKLTRLLRDSLGG 223
>TC81646 similar to GP|13536981|dbj|BAB40709. BY-2 kinesin-like protein 5
{Nicotiana tabacum}, partial (50%)
Length = 1456
Score = 71.2 bits (173), Expect = 2e-12
Identities = 40/92 (43%), Positives = 60/92 (64%)
Frame = +3
Query: 88 SRFKTSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRH 147
++ +TS++ +VDL GSER TGA G L E IN SLS L +++ L K+ H
Sbjct: 498 AKTETSKLWMVDLGGSERLLKTGARGLTLDEGRAINLSLSALADVLAALKR-----KRSH 662
Query: 148 IPYRDSRLTFLLQESLGGNAKLAMVCAISPAQ 179
+PYR+S+LT LL++SLG +K+ M+ ISP++
Sbjct: 663 VPYRNSKLTQLLRDSLGDGSKVLMLVHISPSE 758
>BG583316 homologue to GP|11994617|db contains similarity to kinesin
protein~gene_id:MGL6.9 {Arabidopsis thaliana}, partial
(15%)
Length = 725
Score = 55.1 bits (131), Expect = 1e-07
Identities = 37/96 (38%), Positives = 50/96 (51%), Gaps = 1/96 (1%)
Frame = +1
Query: 83 AADGVSRFKTSRINLVDLAGSERQKSTGAAGERLK-EAGNINRSLSQLGNLINILAEVSQ 141
A D S +I+ +DLAGSER T + + E IN+SL L I L
Sbjct: 4 ANDARSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRAL----- 168
Query: 142 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISP 177
Q HIP+R S+LT +L++S GN+K M+ ISP
Sbjct: 169 DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISP 276
>BI272139 similar to PIR|C96661|C9 kinesin-like protein 73641-79546
[imported] - Arabidopsis thaliana, partial (10%)
Length = 381
Score = 50.4 bits (119), Expect = 3e-06
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +1
Query: 1 IYNEQITDLLDPS--QRNLQIREDVK-SGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIG 57
IYNEQ+ DLL + Q+ L I + +G+ V + + V++M++V +L+ G+ NR
Sbjct: 100 IYNEQVRDLLSSNGPQKRLGIWNTTQPNGLAVPDASMHSVNSMQNVLELMNIGMMNRATS 279
Query: 58 ATSINSESSRSHTVFT 73
AT++N SSRSH+V +
Sbjct: 280 ATALNERSSRSHSVLS 327
>CA989870 similar to GP|18201934|g kinesin-like protein heavy chain
{Arabidopsis thaliana}, partial (9%)
Length = 806
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +2
Query: 148 IPYRDSRLTFLLQESLGGNAKLAMVCAISP 177
IPYR+S+LT +LQ+SLGG+AK M I+P
Sbjct: 2 IPYRNSKLTQVLQDSLGGHAKTLMFVHINP 91
>TC88497 similar to GP|11994617|dbj|BAB02754. contains similarity to kinesin
protein~gene_id:MGL6.9 {Arabidopsis thaliana}, partial
(26%)
Length = 1310
Score = 38.5 bits (88), Expect = 0.013
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 145 QRHIPYRDSRLTFLLQESLGGNAKLAMVCAISP 177
Q HIP+R S+LT +L++S GN+K M+ ISP
Sbjct: 119 QIHIPFRGSKLTEVLRDSFVGNSKTVMISCISP 217
>TC76957 similar to PIR|S68805|S68805 pectin acetylesterase (EC 3.1.1.-)
precursor - mung bean, partial (68%)
Length = 858
Score = 32.3 bits (72), Expect = 0.94
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 342 WRFHWFFSP*SLQ*FSQCH--NELCLTWWP*HSCV 374
WR ++F+ *SLQ F+ C +E+CL W + CV
Sbjct: 470 WRIDFYFTM*SLQNFTTCSS*SEMCLRCWLFYQCV 574
>CA917167 similar to GP|7270878|emb kinesin like protein {Arabidopsis
thaliana}, partial (12%)
Length = 767
Score = 31.2 bits (69), Expect = 2.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 163 LGGNAKLAMVCAISPAQSLVFQ 184
LGGNA+ A++C +SPA+S V Q
Sbjct: 4 LGGNARTAIICTLSPARSHVEQ 69
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.375 0.168 0.667
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,579,744
Number of Sequences: 36976
Number of extensions: 416680
Number of successful extensions: 6168
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 1318
length of query: 1011
length of database: 9,014,727
effective HSP length: 106
effective length of query: 905
effective length of database: 5,095,271
effective search space: 4611220255
effective search space used: 4611220255
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 63 (28.9 bits)
Medicago: description of AC147484.10