BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147483.10 - phase: 0
(2245 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 398 e-110
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 303 4e-82
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 301 2e-81
AL375831 241 4e-80
AL366605 285 1e-76
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 253 5e-67
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 239 1e-62
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 152 4e-59
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 181 3e-45
BE942785 139 1e-32
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 114 6e-25
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ... 91 4e-18
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 1e-17
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 85 3e-16
AL375832 83 1e-15
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 78 3e-14
BE124481 72 2e-12
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 1e-10
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 49 2e-05
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 2e-05
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 398 bits (1022), Expect = e-110
Identities = 189/197 (95%), Positives = 193/197 (97%)
Frame = -2
Query: 1644 KSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 1703
KSKDCEEPLI EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 1704 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYF 1763
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHA LIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 1764 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGE 1823
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVP+IKVQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 1824 NVVDCKPWYYDIKQFLL 1840
NVVD KPWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 303 bits (777), Expect = 4e-82
Identities = 146/172 (84%), Positives = 154/172 (88%)
Frame = -2
Query: 438 PVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFH 497
PV QQ+Q QQARPTFP IPMLYAE LPTLL RGHCT RQGKPPPDPLPPRFRSDLKCDFH
Sbjct: 518 PVHQQRQ*QQARPTFPLIPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRFRSDLKCDFH 339
Query: 498 QGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHAVVNMIEVCEEAPRLD 557
QGALGHDVEGCYALK+IVKKLI+QGKLTFENNVPHVLDNPLPNHA VNMIEV EEAP LD
Sbjct: 338 QGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNHAAVNMIEVYEEAPGLD 159
Query: 558 VRNVATPLVPLHIKLCKASLFNHDHAKCLGCLRDPLGCHAVQDDIQSLMNDN 609
VRNV TPLVPLHIKLC+ASLF+HDHA C +PLGC VQ+DIQSLMN+N
Sbjct: 158 VRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSLMNNN 3
Score = 73.9 bits (180), Expect = 6e-13
Identities = 40/56 (71%), Positives = 45/56 (79%)
Frame = -1
Query: 3 EENAQLRTELASLKEELAKANDVMTALLAAQEQSATAIPTTTAAPVTTSVLPTTSA 58
EENAQLRTELAS++EELAKAND MTALLAAQEQS+T PTTT A T + T+A
Sbjct: 624 EENAQLRTELASMREELAKANDTMTALLAAQEQSSTGSPTTTVATG*TYLSSDTNA 457
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 301 bits (770), Expect = 2e-81
Identities = 133/167 (79%), Positives = 156/167 (92%)
Frame = -2
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKT 1607
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK A+TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1608 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVF 1667
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMYLK KDC+EPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1668 DGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
DGAVN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 1514 CVLGQQDETGKKEHAIYYLSKKFT 1537
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>AL375831
Length = 467
Score = 241 bits (615), Expect(2) = 4e-80
Identities = 119/121 (98%), Positives = 120/121 (98%)
Frame = +2
Query: 91 VLIPATNAASIIATLPQTTAAVTEPLVHILPQGININTQHRSIPVTKTMEEMMEELAKEL 150
VLIPATNAASIIATLPQTTAAVTEPLVH LPQGININTQHRSIPVTKTMEEMMEELAKEL
Sbjct: 2 VLIPATNAASIIATLPQTTAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKEL 181
Query: 151 RHEIQANRGSADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK 210
RHEIQANRG+ADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK
Sbjct: 182 RHEIQANRGNADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK 361
Query: 211 D 211
D
Sbjct: 362 D 364
Score = 77.8 bits (190), Expect(2) = 4e-80
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +3
Query: 210 KDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE 245
K NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE
Sbjct: 360 KTNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE 467
>AL366605
Length = 422
Score = 285 bits (729), Expect = 1e-76
Identities = 135/140 (96%), Positives = 138/140 (98%)
Frame = -3
Query: 152 HEIQANRGSADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 211
HEI+ANRG+ADS KTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD
Sbjct: 420 HEIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 241
Query: 212 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELATAFKSHYGFNTRLRPNREFLRSLS 271
NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELA AFKSHYGFNTRL+PNREFLRSLS
Sbjct: 240 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLS 61
Query: 272 QKKEESFREYAQRWRGAAAR 291
QKKEESFREYAQRWRGAAAR
Sbjct: 60 QKKEESFREYAQRWRGAAAR 1
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
II BAC F26H6; putative retroelement pol polyprotein,
partial (1%)
Length = 488
Score = 253 bits (647), Expect = 5e-67
Identities = 129/180 (71%), Positives = 141/180 (77%)
Frame = +1
Query: 903 VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSF 962
+TFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG
Sbjct: 1 ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123
Query: 963 SCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASLKDAQRAVQEGQAAGWGKVIQLCENKRK 1022
SAEGTAFQGL++EGAEPKK GAAMASLKDAQ+AVQEGQAA WGK+IQLCENKRK
Sbjct: 124 ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285
Query: 1023 EGLGFSPSSRVSSGVFHSAGFVNAISEEATGSGLRPVFVTPGGIATDWDAIDIPSIMHVS 1082
EGL FSP+S VS+G FHSAGFVN ++EE RP+FV PGGIA DWDA+D+PSIMHVS
Sbjct: 286 EGLRFSPTSGVSTGTFHSAGFVNTLAEEVARFVPRPLFVIPGGIAKDWDAVDVPSIMHVS 465
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 239 bits (609), Expect = 1e-62
Identities = 117/128 (91%), Positives = 121/128 (94%)
Frame = -1
Query: 1126 QEKKAIQSHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMP 1185
QE+KAIQ HQEEIELIN+GTEENKREIK+GA LEEGVK+KI QLLREY DIFA SYEDMP
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 1186 GLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 1245
GLDP IVEHRIPTKPECPPVR KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 1246 VPVPKKDG 1253
VPVPKKDG
Sbjct: 24 VPVPKKDG 1
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 152 bits (383), Expect(2) = 4e-59
Identities = 70/136 (51%), Positives = 101/136 (73%)
Frame = +2
Query: 1305 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1364
M P+D EKT+FIT GT+CYKVMPFGL NAG+TYQR + +F D + +EVY+DDM+VK
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 1365 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1424
S H+ +L + F+ L +Y ++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 1425 EMPAPQTEKQVRGFLG 1440
++P+P+ ++V+ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
Score = 97.1 bits (240), Expect(2) = 4e-59
Identities = 49/120 (40%), Positives = 75/120 (61%)
Frame = +3
Query: 1440 GRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGR 1499
GR+ ++RFIS T C P +KLL N+ VW+++C+EAF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 1500 PLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1559
L +Y+A+ ++ VL ++D +K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 181 bits (459), Expect = 3e-45
Identities = 123/398 (30%), Positives = 200/398 (49%), Gaps = 7/398 (1%)
Frame = +1
Query: 1169 LLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPEC----PPVRQ-KLRRTHPDMALKIKSE 1223
+L E+PD+F +++H IP P+ PP+ L L +K
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 1224 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1283
++ +D GF+ A ++ V K G +R CVD+R LN + KD +PLP I +
Sbjct: 523 LEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699
Query: 1284 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1343
A ++ F+ +D + ++++++ ED+EKT+F T +G F + V PFGL A AT+QR +
Sbjct: 700 RVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYIN 879
Query: 1344 TLFHDMIHKEVEVYVDDMIVKST-DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 1402
H+ + V Y+DD+++ +T ++ H + ++ RL L L+P KC F V + K
Sbjct: 880 KTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVK 1059
Query: 1403 LLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1461
+GFI++ KG+ DP K+ AIR+ P + K R FLG NY FI + P+ +
Sbjct: 1060 YVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTR 1239
Query: 1462 LLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1521
L RK+ P W E + AF +K E P+L + ++G VL Q+D
Sbjct: 1240 LTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDG 1419
Query: 1522 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1559
TG H + + S++ + E Y + +K A+ WA R
Sbjct: 1420 TG-AAHPVAFHSQRLSPAEYNYPIHDKELLAV-WACLR 1527
>BE942785
Length = 460
Score = 139 bits (351), Expect = 1e-32
Identities = 68/82 (82%), Positives = 75/82 (90%)
Frame = -2
Query: 942 NGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASLKDAQRA 1001
+G LVTIHGEEAYL+SQLSSFSCIEAGSAEGTAFQGLT+EG EPK+ G AMASLKDAQRA
Sbjct: 378 SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199
Query: 1002 VQEGQAAGWGKVIQLCENKRKE 1023
VQE QAAGWG++IQL ENK K+
Sbjct: 198 VQESQAAGWGRLIQLRENKHKD 133
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 114 bits (284), Expect = 6e-25
Identities = 63/196 (32%), Positives = 97/196 (49%)
Frame = +2
Query: 1862 RFLLDGDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 1921
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 1922 AMEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRF 1981
M D + + KC CQ + N I F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 1982 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 2041
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 2042 EEFKIEHHNSSPYRPQ 2057
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
(ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
partial (0%)
Length = 665
Score = 91.3 bits (225), Expect = 4e-18
Identities = 56/137 (40%), Positives = 70/137 (50%), Gaps = 11/137 (8%)
Frame = +3
Query: 409 PPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFP-----------PIPM 457
PP Q P P QP P Q+ +QQ P Q QNQ + P PIP+
Sbjct: 228 PPLVQQRPQSPYQPMCP-----QKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPV 392
Query: 458 LYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKK 517
YA+LLP LL++ T P+ LPP +R DL C FHQGA GHD E CY LK V+K
Sbjct: 393 KYADLLPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQK 572
Query: 518 LIDQGKLTFENNVPHVL 534
LI+ +F++ VL
Sbjct: 573 LIENNVWSFDDQDIKVL 623
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 59.3 bits (142), Expect(2) = 1e-17
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -3
Query: 2091 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 2147
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 2148 NLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWAPNY 2206
IEE+R A+ R +YQ ++++ ++K V + K+G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 2207 EG 2208
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 1e-17
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 2018 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 2069
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 85.1 bits (209), Expect = 3e-16
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 5/230 (2%)
Frame = +2
Query: 1192 VEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKK 1251
++ I P P+ R +P +K +++ ++ GF+ YP V ++ + KK
Sbjct: 35 IDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKK 211
Query: 1252 DGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 1311
DG +RM +D+ LN + K +PLP ID L DN SK F +D G +Q ++ ED
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVP 391
Query: 1312 KTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 1371
KT+F +G + VM FG N + M +F D + V V+ +D+++ S +E +H
Sbjct: 392 KTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEH 571
Query: 1372 VEYLTKMFERLRKYKLRLNPNKCTFG-----VRSGKLLGFIVSQKGIEVD 1416
+L + L+ L C V G ++S +G++VD
Sbjct: 572 ENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>AL375832
Length = 535
Score = 83.2 bits (204), Expect = 1e-15
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 1043 FVNAISEEATGSGLRPVFVTPGGIATDWDAIDIPSIMHVSE 1083
FVNAISEEATGSGLRP FVTPGGIA+DWDAIDIPSIMHVSE
Sbjct: 3 FVNAISEEATGSGLRPAFVTPGGIASDWDAIDIPSIMHVSE 125
Score = 34.7 bits (78), Expect = 0.43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 1081 VSELNHNKPVEHSNPTVPPSFD 1102
+ LNHNKPVEHSN P+FD
Sbjct: 418 ICRLNHNKPVEHSNSMPLPNFD 483
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 78.2 bits (191), Expect = 3e-14
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 15/353 (4%)
Frame = +2
Query: 1890 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 1949
+L+ + HD T H G + +++ ++W ++ R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 1950 ALNVISSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 2004
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 2005 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 2064
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 2065 ANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2123
N+ I+ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 2124 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKV 2183
+ V+ E + + + D I+ + + A R + + + D+ ++V
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 2184 GELV---LKRRISQQPDPRGKW------APNYEGPYVVKKAFSGGALILTHMD 2227
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040 GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BE124481
Length = 538
Score = 72.4 bits (176), Expect = 2e-12
Identities = 44/107 (41%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Frame = +3
Query: 409 PPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFP-----------PIPM 457
PP Q P P QP P Q+ +QQ P Q QNQ + P PIP+
Sbjct: 231 PPLVQQRPQSPYQPMCP-----QKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPV 395
Query: 458 LYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 504
YA+LLP LL++ T P+ LPP +R DL C FHQGA GHD
Sbjct: 396 KYADLLPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHD 536
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 66.2 bits (160), Expect = 1e-10
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 1679 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1738
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1739 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1787
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 1509 DESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1564
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 48.9 bits (115), Expect = 2e-05
Identities = 35/101 (34%), Positives = 51/101 (49%), Gaps = 3/101 (2%)
Frame = +1
Query: 2146 QLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVL--KRRISQQPDPRGKWA 2203
+LN +EE R+DA Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 2204 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 2243
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,526,701
Number of Sequences: 36976
Number of extensions: 988935
Number of successful extensions: 5943
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 5326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5876
length of query: 2245
length of database: 9,014,727
effective HSP length: 111
effective length of query: 2134
effective length of database: 4,910,391
effective search space: 10478774394
effective search space used: 10478774394
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC147483.10