TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147435.9 + phase: 0 
         (351 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85535 homologue to SP|P28552|ATPG_PEA ATP synthase gamma chain...   451  e-127
TC87280 similar to SP|P26360|ATP3_IPOBA ATP synthase gamma chain...   109  1e-24
BQ151383 weakly similar to SP|P28552|ATPG ATP synthase gamma cha...    57  1e-16
TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-con...    56  2e-08
TC85536 similar to SP|P28552|ATPG_PEA ATP synthase gamma chain  ...    42  3e-04
TC86467 similar to GP|15294264|gb|AAK95309.1 AT4g26670/F10M23_10...    31  0.82

>TC85535 homologue to SP|P28552|ATPG_PEA ATP synthase gamma chain
           chloroplast precursor (EC 3.6.3.14). [Garden pea] {Pisum
           sativum}, partial (98%)
          Length = 1681

 Score =  451 bits (1160), Expect = e-127
 Identities = 228/336 (67%), Positives = 277/336 (81%)
 Frame = +2

Query: 12  PSKPHFPQHFQIRCGIREIRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEA 71
           PS+P      QI+CG+RE+R+RI+SVK TQKITEAMKLVAAA+VRRAQEAV+N RPFS+ 
Sbjct: 362 PSRPT-----QIQCGLRELRNRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQT 526

Query: 72  FAETLHSINQSLQNDDVVVPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMEL 131
             E L+SIN+ LQ DD+  PLT +RPVK VAL+V TGDRGLCGGFNN++ KKAE R+ EL
Sbjct: 527 LVEVLYSINEQLQTDDIEAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAEKRIAEL 706

Query: 132 KNLGINCVVISVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIADDVFSLFVTEEVD 191
           K LG++  +ISVG+KG+SYF R  ++ VDRF++    PT K+AQ IADDVFSLFV+EEVD
Sbjct: 707 KGLGLDYTIISVGRKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQTIADDVFSLFVSEEVD 886

Query: 192 KVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKR 251
           KVEL+YTKFVSLV+  P+I TLLPLS KGE+ D+NGN VD  EDE FRLT+K+GKL ++R
Sbjct: 887 KVELLYTKFVSLVKSEPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVER 1066

Query: 252 DVKKKKMKDGFVPVMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNAT 311
           D  + K  D F P+++FEQDP QILDA++PLYLNSQ+L+ALQESLASELAARM AMS+A 
Sbjct: 1067DAVRSKTID-FSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMTAMSSAC 1243

Query: 312 DNAVELTKELSVAYNRERQAKITGEILEIVAGAEAL 347
           DNA+EL K LS  YNR+RQAKITGEILEIVAGA+AL
Sbjct: 1244DNAIELKKNLSRVYNRQRQAKITGEILEIVAGADAL 1351


>TC87280 similar to SP|P26360|ATP3_IPOBA ATP synthase gamma chain
           mitochondrial precursor (EC 3.6.3.14). [Sweet potato
           Batate], partial (87%)
          Length = 1307

 Score =  109 bits (273), Expect = 1e-24
 Identities = 88/320 (27%), Positives = 150/320 (46%), Gaps = 2/320 (0%)
 Frame = +3

Query: 30  IRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVV 89
           +R+R+ SVK  QKIT+AMK+VAA+++R  Q    NSR   + F         +L  D   
Sbjct: 207 VRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFT--------ALLGDATS 362

Query: 90  VPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVISVGKKGSS 149
           V       VK   +I ++ D+GLCGG N++  K + A              + +G+K  +
Sbjct: 363 V------DVKKNVVITVSSDKGLCGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKA 524

Query: 150 YFNRSGFVEVDRFIDNVGFPTTKDAQ--IIADDVFSLFVTEEVDKVELVYTKFVSLVRFN 207
              R    ++   +  +        Q  ++ADD+       E D + +V+ +F S+V+F 
Sbjct: 525 QLIRDSKKDIALSLTEIQKNPLNYTQVSVLADDILK---NVEYDALRIVFNRFQSVVQFL 695

Query: 208 PVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKKKMKDGFVPVME 267
           P + T+L              S +++E E        G L    ++   +++ G      
Sbjct: 696 PTVSTIL--------------SPEIVERE----AEAGGSLG---ELDSYEIEGG------ 794

Query: 268 FEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAYNR 327
                ++IL  +     +  +  A+ E+  SE  ARM AM +++ NA ++   L++ YNR
Sbjct: 795 --DTKSEILQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNR 968

Query: 328 ERQAKITGEILEIVAGAEAL 347
            RQA IT E++EI++GA AL
Sbjct: 969 TRQASITTELIEIISGASAL 1028


>BQ151383 weakly similar to SP|P28552|ATPG ATP synthase gamma chain
           chloroplast precursor (EC 3.6.3.14). [Garden pea] {Pisum
           sativum}, partial (27%)
          Length = 804

 Score = 57.4 bits (137), Expect(2) = 1e-16
 Identities = 28/61 (45%), Positives = 40/61 (64%)
 Frame = +1

Query: 184 LFVTEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSK 243
           LFV EEV   EL YTKFVSL++  P+I TLL L+   E+  +NGN V    D+ F+ +++
Sbjct: 214 LFVNEEVYIFEL*YTKFVSLLKSKPIIHTLLQLTPNSEISHINGNCVYAANDDLFKASTQ 393

Query: 244 D 244
           +
Sbjct: 394 E 396



 Score = 46.6 bits (109), Expect(2) = 1e-16
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +2

Query: 122 KKAEAR-VMELKNLGINCVVISVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQII 177
           KKA A+ ++ELK LG++  +I V K G+ YF R  ++ VDR +++   PT K+A  I
Sbjct: 23  KKA*AKGLLELKGLGLDYTIIIVVKNGNFYFLRKPYIPVDRLLESGNLPTAKEAHTI 193


>TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-containing
           protein {Atriplex hortensis}, partial (41%)
          Length = 2500

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = -2

Query: 288 VLKALQESLASELAARMGAMSNATDNAVELTKELSVAYNRERQAKITGEILEIVAGAEAL 347
           +  A+ E+  SE  ARM AM +++ NA ++   L++ YNR RQA IT E++EI++GA AL
Sbjct: 459 MFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASAL 280


>TC85536 similar to SP|P28552|ATPG_PEA ATP synthase gamma chain  chloroplast
           precursor (EC 3.6.3.14). [Garden pea] {Pisum sativum},
           partial (20%)
          Length = 654

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 12  PSKPHFPQHFQIRCGIREIRDRINSVKTTQKITEAMKLVAAAR 54
           PS+P      QI+ G+RE+R+RI+SVK T KITE+MKL    +
Sbjct: 487 PSRPT-----QIQXGLRELRNRIDSVKXTXKITESMKLXGCCK 600


>TC86467 similar to GP|15294264|gb|AAK95309.1 AT4g26670/F10M23_10
           {Arabidopsis thaliana}, partial (57%)
          Length = 967

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 17/54 (31%), Positives = 24/54 (43%)
 Frame = -3

Query: 268 FEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKEL 321
           F +DPA   D + P +LN+ V     E + +  A  M   +  TD A     EL
Sbjct: 266 FAEDPASAKDPLKPFFLNNPVPYPKTEPIKAPPAESMAKRTRQTDGAAGTMAEL 105


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.135    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,540,155
Number of Sequences: 36976
Number of extensions: 79758
Number of successful extensions: 409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of query: 351
length of database: 9,014,727
effective HSP length: 97
effective length of query: 254
effective length of database: 5,428,055
effective search space: 1378725970
effective search space used: 1378725970
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)