
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.12 + phase: 0
(163 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90609 similar to GP|21555067|gb|AAM63768.1 unknown {Arabidopsi... 334 1e-92
BQ751450 similar to GP|21954534|db 6-phosphogluconate dehydrogen... 28 1.2
TC89624 similar to GP|20160656|dbj|BAB89601. contains EST AU0581... 28 1.6
TC78518 similar to PIR|JC7234|JC7234 27k vesicle-associated memb... 28 1.6
TC82617 similar to GP|14190477|gb|AAK55719.1 AT5g64260/MSJ1_10 {... 28 2.1
AA660656 weakly similar to GP|6498428|dbj| Similar to Arabidopsi... 27 2.8
BQ150300 similar to GP|10178184|dbj 50S ribosomal protein L29 {A... 27 3.6
BF633702 26 6.2
TC78434 similar to GP|3790100|gb|AAC67586.1| pyrophosphate-depen... 26 8.1
TC91118 26 8.1
TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, par... 26 8.1
TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 26 8.1
>TC90609 similar to GP|21555067|gb|AAM63768.1 unknown {Arabidopsis
thaliana}, partial (71%)
Length = 661
Score = 334 bits (856), Expect = 1e-92
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +3
Query: 1 MLLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLI 60
MLLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLI
Sbjct: 45 MLLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLI 224
Query: 61 STPVIGWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGP 120
STPVIGWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGP
Sbjct: 225 STPVIGWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGP 404
Query: 121 FGLLGAVEGLSYLALVAIVVVFGLQYFQQGYIPGPLPADQCFG 163
FGLLGAVEGLSYLALVAIVVVFGLQYFQQGYIPGPLPADQCFG
Sbjct: 405 FGLLGAVEGLSYLALVAIVVVFGLQYFQQGYIPGPLPADQCFG 533
>BQ751450 similar to GP|21954534|db 6-phosphogluconate dehydrogenase
{Aspergillus oryzae}, partial (36%)
Length = 661
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 17 LNHPLRKPKSHHVRLKLK 34
L+HPLR P+ HH RL L+
Sbjct: 486 LHHPLRLPQGHHQRLPLQ 433
>TC89624 similar to GP|20160656|dbj|BAB89601. contains EST
AU058101(S2419)~similar to Arabidopsis thaliana
chromosome5 At5g58640~unknown protein, partial (60%)
Length = 730
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 3 LFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGG 58
LFSP PK ++ HP+ +P+ H++ L + G D P + I G
Sbjct: 125 LFSPSPPPKPSRHNHVHPIPQPQQSHLQQPLDFPIQKQSGID----PIGVGPIGAG 280
>TC78518 similar to PIR|JC7234|JC7234 27k vesicle-associated membrane
protein-associated protein - curled-leaved tobacco,
partial (83%)
Length = 827
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/62 (33%), Positives = 33/62 (52%), Gaps = 10/62 (16%)
Frame = +1
Query: 2 LLFSPISTPKTFTNHLNHPL-RKPKSHHVR-LKLKITNMA--------KEGSDTNSSPTE 51
LL S I++P T T +N + K H+V KL++ +A +EGSD +SSP
Sbjct: 343 LLQSVIASPGTTTKDINPEMFSKEAGHNVEECKLRVVYVAPPGPPSPVREGSDEDSSPDS 522
Query: 52 IA 53
++
Sbjct: 523 VS 528
>TC82617 similar to GP|14190477|gb|AAK55719.1 AT5g64260/MSJ1_10 {Arabidopsis
thaliana}, partial (47%)
Length = 710
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -1
Query: 60 ISTPVIGWSLYTLKTTGCGLPPGPGGSIG 88
+S P+ W L+ L T GC P S+G
Sbjct: 224 VSFPLRSWPLWYLSTRGCSCTSSPKESVG 138
>AA660656 weakly similar to GP|6498428|dbj| Similar to Arabidopsis thaliana
chromosome II BAC T27A16 sequence; hypothetical protein.
(AC005496), partial (14%)
Length = 634
Score = 27.3 bits (59), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 76 GCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYT 108
G L PGG + + G ++VVG++ WS+ T
Sbjct: 357 GYALSQLPGGWLAKIFGGXNVLVVGVLIWSVAT 455
>BQ150300 similar to GP|10178184|dbj 50S ribosomal protein L29 {Arabidopsis
thaliana}, partial (51%)
Length = 695
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 109 KTKTGSGLPNGPFGLLGAVEGLSYLALVAIVVVFGLQ 145
K K G G+PN P+ L ++ LS LA++ I ++F L+
Sbjct: 474 KLKGGPGIPNSPYMLSSELQ-LS-LAVIYITIIFRLE 578
>BF633702
Length = 361
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 46 NSSPTEIAAIAGGLISTPVIGWSLYTLKTTGCGLPP 81
+S+ +EI A+ P++ +Y+ K G +PP
Sbjct: 309 DSTTSEILAVIPSFA*PPIVPMQMYSAKAVGSAVPP 202
>TC78434 similar to GP|3790100|gb|AAC67586.1| pyrophosphate-dependent
phosphofructokinase beta subunit {Citrus x paradisi},
partial (49%)
Length = 1050
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 2 LLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITN 37
L + IS F+N L+HPL K H R + N
Sbjct: 9 LFLNLISLVVPFSNLLSHPLSKTNLRHSRFSTLLNN 116
>TC91118
Length = 766
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +3
Query: 22 RKPKSHHVRLKLKITNMAKEGSDTNSSP 49
RKP++HH+R L + +A+ S P
Sbjct: 561 RKPRTHHLRKSLSVVRLAEITSGLRLRP 644
>TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, partial (94%)
Length = 1831
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/63 (20%), Positives = 30/63 (46%)
Frame = -3
Query: 80 PPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGPFGLLGAVEGLSYLALVAIV 139
PP ++G + +S+ + + ++W + SG+ PF + G+S++ L +
Sbjct: 1121 PPWTTTTVGIIFSLSFFLTMSGMSWVSLSFFLAMSGMSWIPFSFFLTMSGMSWVPLSFFL 942
Query: 140 VVF 142
+F
Sbjct: 941 TMF 933
>TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22
{Arabidopsis thaliana}, partial (39%)
Length = 1514
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 7 ISTPKTFTNHLNHPLRKPKSHHVRLKL 33
I+ PK+ N L + L +SHH++++L
Sbjct: 278 ITVPKSMKNSLCYSLTT*RSHHLKMRL 358
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,425,622
Number of Sequences: 36976
Number of extensions: 71030
Number of successful extensions: 489
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of query: 163
length of database: 9,014,727
effective HSP length: 89
effective length of query: 74
effective length of database: 5,723,863
effective search space: 423565862
effective search space used: 423565862
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147178.12