BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.1 - phase: 0
(79 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI264037 similar to PIR|F85433|F854 hypothetical protein AT4g367... 165 3e-42
TC79262 similar to PIR|F85433|F85433 hypothetical protein AT4g36... 134 6e-33
CA859738 weakly similar to GP|7105620|gb|A Hypothetical protein ... 31 0.099
TC83479 similar to GP|23476992|emb|CAD48949. hypothetical protei... 30 0.17
TC89917 similar to GP|21554042|gb|AAM63123.1 AX110P-like protein... 28 0.49
BE942050 similar to GP|21554042|gb AX110P-like protein {Arabidop... 28 0.49
TC79773 similar to PIR|C96774|C96774 AtHVA22a 65476-64429 [impo... 28 0.49
CB891756 similar to GP|22553016|e multidrug-resistance related p... 26 2.4
BG449884 similar to GP|10172595|d multidrug resistance-associate... 26 3.2
BE187567 similar to PIR|T51375|T51 hypothetical protein F1N13_60... 25 4.2
TC91674 25 5.5
TC84314 25 5.5
TC78616 similar to GP|11225589|gb|AAG33060.1 AtHVA22e {Arabidops... 25 7.1
TC92709 weakly similar to GP|8978342|dbj|BAA98195.1 short chain ... 25 7.1
TC78206 similar to GP|15450507|gb|AAK96546.1 AT4g27600/T29A15_90... 24 9.3
BG584025 homologue to PIR|A46259|A46 recombination protein recA ... 24 9.3
>BI264037 similar to PIR|F85433|F854 hypothetical protein AT4g36720
[imported] - Arabidopsis thaliana, partial (20%)
Length = 668
Score = 165 bits (417), Expect = 3e-42
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = +2
Query: 1 MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 60
MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC
Sbjct: 17 MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 196
Query: 61 LVYWAGLNFINPYRPRNRD 79
LVYWAGLNFINPYRPRNRD
Sbjct: 197LVYWAGLNFINPYRPRNRD 253
>TC79262 similar to PIR|F85433|F85433 hypothetical protein AT4g36720
[imported] - Arabidopsis thaliana, partial (51%)
Length = 952
Score = 134 bits (337), Expect = 6e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +3
Query: 1 MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 60
MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC
Sbjct: 12 MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 191
Query: 61 LVYWA 65
LVYWA
Sbjct: 192LVYWA 206
>CA859738 weakly similar to GP|7105620|gb|A Hypothetical protein Y71F9B.3
{Caenorhabditis elegans}, partial (26%)
Length = 428
Score = 30.8 bits (68), Expect = 0.099
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYWAGLNFIN 71
+G P Y++FKA+ES + + L YW F++
Sbjct: 294 IGWVYPAYASFKALESSDNADDTQWLTYWTVFGFVS 401
>TC83479 similar to GP|23476992|emb|CAD48949. hypothetical protein
{Plasmodium falciparum 3D7}, partial (0%)
Length = 1222
Score = 30.0 bits (66), Expect = 0.17
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 41 PVYSTFKAIESKNQDAQQRCLVYW 64
P+Y + + +ES + + QRCLV+W
Sbjct: 191 PLYVSIRTLESDCRSSNQRCLVFW 262
>TC89917 similar to GP|21554042|gb|AAM63123.1 AX110P-like protein
{Arabidopsis thaliana}, partial (74%)
Length = 852
Score = 28.5 bits (62), Expect = 0.49
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 19 LLCPLG--SHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYWA 65
+L LG +H+V+ C P S+ AI S ++ +C ++WA
Sbjct: 400 ILAVLGL*THIVLSINCTPFSSQAPTISSNSAISSATGFSRSKCFLFWA 254
>BE942050 similar to GP|21554042|gb AX110P-like protein {Arabidopsis
thaliana}, partial (37%)
Length = 656
Score = 28.5 bits (62), Expect = 0.49
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 19 LLCPLG--SHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYWA 65
+L LG +H+V+ C P S+ AI S ++ +C ++WA
Sbjct: 393 ILAVLGL*THIVLSINCTPFSSQAPTISSNSAISSATGFSRSKCFLFWA 247
>TC79773 similar to PIR|C96774|C96774 AtHVA22a 65476-64429 [imported] -
Arabidopsis thaliana, partial (88%)
Length = 928
Score = 28.5 bits (62), Expect = 0.49
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = +2
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
+ + P+Y++ +AIESK+ Q+ L YW
Sbjct: 176 ISLVYPLYASVRAIESKSPVDDQQWLTYW 262
>CB891756 similar to GP|22553016|e multidrug-resistance related protein
{Arabidopsis thaliana}, partial (11%)
Length = 537
Score = 26.2 bits (56), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 25 SHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQR 59
SH+ CCS G+ ++S + K +A QR
Sbjct: 272 SHMASSNCCCSGNGGIDIHSALLSSNCKGTNADQR 376
>BG449884 similar to GP|10172595|d multidrug resistance-associated protein
(MRP); ABC-transoprter {Arabidopsis thaliana}, partial
(13%)
Length = 647
Score = 25.8 bits (55), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 16 LRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKA 48
L + +CP +++AC SV LPV T A
Sbjct: 228 LSINICPATGSTSLKSACTSVVFPLPVLPTMPA 130
>BE187567 similar to PIR|T51375|T51 hypothetical protein F1N13_60 -
Arabidopsis thaliana, partial (5%)
Length = 480
Score = 25.4 bits (54), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = +2
Query: 9 NIASEVGLRLLLCPLGSHVVIRTACCSV 36
+I S GLR LL P H + TAC ++
Sbjct: 323 SITSSPGLRRLLNPRAIHYIQYTACLTI 406
>TC91674
Length = 747
Score = 25.0 bits (53), Expect = 5.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 26 HVVIRTACCSVGIGLP 41
H VIR ACCS G LP
Sbjct: 649 HCVIRFACCSGGKTLP 696
>TC84314
Length = 690
Score = 25.0 bits (53), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 14 VGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTF 46
+GLRL LC LGS + + +G P Y F
Sbjct: 637 IGLRLSLCGLGSPIAVAR*APP*PLGPPPYLRF 539
>TC78616 similar to GP|11225589|gb|AAG33060.1 AtHVA22e {Arabidopsis
thaliana}, partial (84%)
Length = 853
Score = 24.6 bits (52), Expect = 7.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 41 PVYSTFKAIESKNQDAQQRCLVYWAGLNFI 70
P+Y++ AIES ++ ++ L YW +F+
Sbjct: 230 PLYASVVAIESPSKLDDEQWLAYWIIYSFL 319
>TC92709 weakly similar to GP|8978342|dbj|BAA98195.1 short chain alcohol
dehydrogenase-like {Arabidopsis thaliana}, partial (75%)
Length = 733
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/45 (28%), Positives = 19/45 (41%)
Frame = +1
Query: 26 HVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYWAGLNFI 70
H ++ C G G V++ S+NQD CL W F+
Sbjct: 166 HAIVEDLC---GFGATVHTC-----SRNQDELNNCLNQWRSKGFL 276
>TC78206 similar to GP|15450507|gb|AAK96546.1 AT4g27600/T29A15_90
{Arabidopsis thaliana}, partial (76%)
Length = 1677
Score = 24.3 bits (51), Expect = 9.3
Identities = 12/43 (27%), Positives = 23/43 (52%)
Frame = +1
Query: 3 LPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYST 45
+PLI + S + ++ P+ S+V+I C+V + V S+
Sbjct: 178 VPLIHFHTLSHLNYQIPALPIFSYVLINAETCTVHLPFSVVSS 306
>BG584025 homologue to PIR|A46259|A46 recombination protein recA homolog -
Arabidopsis thaliana (fragment), partial (43%)
Length = 828
Score = 24.3 bits (51), Expect = 9.3
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = -1
Query: 21 CPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQ 57
CP+ H + R +C + LPV ++ E +NQ +
Sbjct: 375 CPIL*HCLFRKSCLYHSLLLPVPFAYQQNERQNQQKE 265
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,724,843
Number of Sequences: 36976
Number of extensions: 31476
Number of successful extensions: 221
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 79
length of database: 9,014,727
effective HSP length: 55
effective length of query: 24
effective length of database: 6,981,047
effective search space: 167545128
effective search space used: 167545128
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147178.1