BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147014.15 - phase: 0
(138 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS O... 142 3e-35
TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box t... 103 3e-23
BE124909 similar to GP|4322475|gb| putative MADS box transcripti... 85 8e-18
TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 60 3e-10
TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalf... 55 1e-08
TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box pro... 54 2e-08
BE321045 similar to PIR|T09700|T097 MADS-box protein - alfalfa (... 50 2e-07
TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {O... 49 6e-07
AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula... 46 4e-06
TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 42 1e-04
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 31 0.18
TC86370 similar to GP|15451010|gb|AAK96776.1 Unknown protein {Ar... 31 0.18
TC81797 similar to GP|17065224|gb|AAL32766.1 Unknown protein {Ar... 31 0.18
TC86369 similar to GP|15451010|gb|AAK96776.1 Unknown protein {Ar... 31 0.18
TC91936 similar to GP|10140803|gb|AAG13633.1 putative myosin {Or... 30 0.31
TC93733 similar to GP|10998143|dbj|BAB03114. kinesin (centromere... 30 0.31
TC76398 homologue to GP|13171103|gb|AAK13589.1 rRNA intron-encod... 30 0.40
TC76720 similar to GP|11121502|emb|CAC14888. putative extensin {... 29 0.52
BE941734 similar to GP|7406677|emb| putative ripening-related bZ... 28 1.2
TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl... 28 1.2
>TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS
OVEREXPRESSION 1 protein (Agamous-like MADS box protein
AGL20)., partial (83%)
Length = 946
Score = 142 bits (359), Expect = 3e-35
Identities = 82/131 (62%), Positives = 101/131 (76%), Gaps = 4/131 (3%)
Frame = +3
Query: 8 QNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYK 67
Q LK E ++MKKI+LLE SKRKL+GEGLGSCS+DELQ+IEQQLEKS++ +R +K + ++
Sbjct: 318 QQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLEKSINKIRVKKTKVFR 497
Query: 68 HQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQPQPTTKDHQRE---DQQPYA-ESSPS 123
QIDQLKEKEK LVAEN RLS++ NY Q +TKD QRE + +PYA +SSPS
Sbjct: 498 EQIDQLKEKEKALVAENVRLSEKY-GNY-----STQESTKD-QRENIAEAEPYADQSSPS 656
Query: 124 SDVVTELFIGL 134
SDV TELFIGL
Sbjct: 657 SDVETELFIGL 689
>TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box
transcription factor ETL {Eucalyptus globulus subsp.
globulus}, partial (71%)
Length = 1089
Score = 103 bits (256), Expect = 3e-23
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Frame = +1
Query: 8 QNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYK 67
Q+LK KK+E LE SKRKL+GE LGSC+ DELQQIE QLE+S+S +RARKNQ K
Sbjct: 487 QHLKECDIDTTKKLEHLELSKRKLLGEELGSCAFDELQQIENQLERSLSKIRARKNQLLK 666
Query: 68 HQIDQLKEKEKNLVAENARLSKQ--VKRNYCPPQPQPQPTTKDHQREDQQPYAESSPSSD 125
QI++LK+KE+ L+ EN RL KQ + +N C + Q ES +
Sbjct: 667 EQIEKLKDKERLLLEENKRLCKQCGIGQNDCLNKQQ-----------------ESVHDEE 795
Query: 126 VVTELFIG 133
V TELFIG
Sbjct: 796 VETELFIG 819
>BE124909 similar to GP|4322475|gb| putative MADS box transcription factor
ETL {Eucalyptus globulus subsp. globulus}, partial (60%)
Length = 608
Score = 85.1 bits (209), Expect = 8e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 7 WQNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAY 66
W +K ++ + + + RKL+GE LGSC+ DELQQIE QLE+S+S +RARKNQ
Sbjct: 344 WNAIKGKSRNWFSAPKESKKIHRKLLGEELGSCAFDELQQIENQLERSLSKIRARKNQLL 523
Query: 67 KHQIDQLKEKEKNLVAENARLSKQ 90
K QI++LK+KE+ L+ EN RL KQ
Sbjct: 524 KEQIEKLKDKERLLLEENKRLCKQ 595
>TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (74%)
Length = 681
Score = 60.1 bits (144), Expect = 3e-10
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +2
Query: 13 ETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYKHQIDQ 72
E A L ++E+++ ++R MGE L S+ ELQ +E QL+ ++ +R+RKNQ I +
Sbjct: 305 EHARLKTRLEVIQKNQRNFMGEELDGLSMKELQHLEHQLDSALKQIRSRKNQLMYESISE 484
Query: 73 LKEKEKNLVAENARLSKQVK 92
L +K+K L +N L+ ++K
Sbjct: 485 LSKKDKALQEKNKLLTTKMK 544
>TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalfa
(fragment), partial (91%)
Length = 800
Score = 54.7 bits (130), Expect = 1e-08
Identities = 31/88 (35%), Positives = 49/88 (55%)
Frame = +2
Query: 4 LNIWQNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKN 63
+ WQ E A L +++ L+ S R++MGE L ++ ELQ +E QLE S+ VR +K
Sbjct: 326 IKFWQR---EAAMLRQQLHNLQESHRQIMGEELSGLTVKELQGLENQLEISLRGVRMKKE 496
Query: 64 QAYKHQIDQLKEKEKNLVAENARLSKQV 91
Q + +I +L K + EN L ++V
Sbjct: 497 QLFMDEIQELNRKGDIIHQENVELYRKV 580
>TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box protein {Malus
x domestica}, partial (85%)
Length = 2050
Score = 54.3 bits (129), Expect = 2e-08
Identities = 34/114 (29%), Positives = 59/114 (50%), Gaps = 4/114 (3%)
Frame = +2
Query: 8 QNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYK 67
Q + E++ L ++I ++ R ++GE LGS SL EL+ +E +LEK +S VR+RK++
Sbjct: 350 QFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLF 529
Query: 68 HQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQ----PQPTTKDHQREDQQPY 117
++ ++++E L N L ++ + Q Q P T D Q Y
Sbjct: 530 ADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQHNLMPDQTMCDQSLPSSQAY 691
>BE321045 similar to PIR|T09700|T097 MADS-box protein - alfalfa (fragment),
partial (38%)
Length = 423
Score = 50.4 bits (119), Expect = 2e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Frame = +1
Query: 4 LNIWQNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKN 63
+ WQ E L ++++ L+ + R+LMGE L S+ LQ +E QLE S+ VR +K
Sbjct: 49 VKFWQR---EADILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKE 219
Query: 64 QAYKHQIDQLKEKEKNLVAENARLSKQV 91
+ +I +L K + EN L K+V
Sbjct: 220 KILTDEIQELNRKGSIIHQENVELYKKV 303
>TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {Oryza
sativa}, partial (78%)
Length = 847
Score = 48.9 bits (115), Expect = 6e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +1
Query: 17 LMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYKHQIDQLKEK 76
L ++++ L+ + R+LMGE L S+ LQ +E QLE S+ VR +K + +I +L K
Sbjct: 421 LRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRK 600
Query: 77 EKNLVAENARLSKQV 91
+ EN L K+V
Sbjct: 601 GSIIHQENVELYKKV 645
>AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula}, partial
(51%)
Length = 493
Score = 46.2 bits (108), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 9 NLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQ 64
N E L K+++LE + R +G L S+ ELQ +EQQL+ S+ +R RKNQ
Sbjct: 314 NWSFEYMKLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQ 481
>TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (68%)
Length = 681
Score = 41.6 bits (96), Expect = 1e-04
Identities = 20/59 (33%), Positives = 34/59 (56%)
Frame = +1
Query: 8 QNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAY 66
+N E A L ++E+L+ ++R MGE L L ELQ +EQQL+ ++ + + +Y
Sbjct: 394 ENWVLEHAKLKARMEVLQRNQRNFMGEDLDGLGLKELQSLEQQLDSALKQITITEEPSY 570
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 30.8 bits (68), Expect = 0.18
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 6/43 (13%)
Frame = +3
Query: 97 PPQPQPQPTTKDHQ------REDQQPYAESSPSSDVVTELFIG 133
PPQPQPQP T+ Q + QQ S+D V L+IG
Sbjct: 147 PPQPQPQPQTQPPQMWAPNAQPPQQSAVPPPSSADEVKTLWIG 275
>TC86370 similar to GP|15451010|gb|AAK96776.1 Unknown protein {Arabidopsis
thaliana}, partial (80%)
Length = 1050
Score = 30.8 bits (68), Expect = 0.18
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 43 ELQQIEQQLEKSVSVVRARKNQAYKHQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQP 102
+L+ L++ + ++ KN+ L+++++ L AE +L +Q+K PP P
Sbjct: 645 KLKDANSGLQEKIKELKVEKNE--------LRDEKQRLKAEKEKLEQQLKSMNAPPSFLP 800
Query: 103 QPT 105
PT
Sbjct: 801 TPT 809
>TC81797 similar to GP|17065224|gb|AAL32766.1 Unknown protein {Arabidopsis
thaliana}, partial (17%)
Length = 758
Score = 30.8 bits (68), Expect = 0.18
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 98 PQPQPQPTTKDHQREDQQ 115
PQPQPQP + HQ++ QQ
Sbjct: 410 PQPQPQPQQQQHQQQQQQ 463
>TC86369 similar to GP|15451010|gb|AAK96776.1 Unknown protein {Arabidopsis
thaliana}, partial (74%)
Length = 1500
Score = 30.8 bits (68), Expect = 0.18
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 43 ELQQIEQQLEKSVSVVRARKNQAYKHQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQP 102
+L+ L++ + ++ KN+ L+++++ L AE +L +Q+K PP P
Sbjct: 856 KLKDANSGLQEKIKELKVEKNE--------LRDEKQRLKAEKEKLEQQLKSMNAPPSFLP 1011
Query: 103 QPT 105
PT
Sbjct: 1012TPT 1020
>TC91936 similar to GP|10140803|gb|AAG13633.1 putative myosin {Oryza
sativa}, partial (4%)
Length = 867
Score = 30.0 bits (66), Expect = 0.31
Identities = 25/90 (27%), Positives = 39/90 (42%)
Frame = +3
Query: 5 NIWQNLKHETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQ 64
N +NLK E ASL ++ EL E ELQ + +Q+EK S + Q
Sbjct: 375 NATENLKSEIASLKRQAELSEL----------------ELQALRKQVEKESS-----RGQ 491
Query: 65 AYKHQIDQLKEKEKNLVAENARLSKQVKRN 94
QI+ L+++ + + +L Q N
Sbjct: 492 NLSRQINGLRDERDSFKTKYEQLKSQQNFN 581
>TC93733 similar to GP|10998143|dbj|BAB03114. kinesin (centromere protein)
like heavy chain-like protein {Arabidopsis thaliana},
partial (13%)
Length = 747
Score = 30.0 bits (66), Expect = 0.31
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Frame = +1
Query: 13 ETASLMKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYKHQIDQ 72
E L +K+E L ASK D+L+ Q+L + S + + A ++
Sbjct: 22 EIEELKQKVEELTASK-------------DQLEVRNQKLAEESSYAKGLASAAAV-ELKA 159
Query: 73 LKEKEKNLVAENARLSKQVKRNYCPPQPQPQPTTKDHQREDQQPYA----ESSPSSDVVT 128
L E+ L+ N RLS ++ + P P+ T + R + Q + +SDV
Sbjct: 160 LSEEVAKLMNHNERLSAELAASKNSPTPRRTSGTAQNGRRESQVRLRRNDQGVSNSDVKR 339
Query: 129 ELFIGLHR 136
EL + R
Sbjct: 340 ELALSKDR 363
>TC76398 homologue to GP|13171103|gb|AAK13589.1 rRNA intron-encoded homing
endonuclease {Oryza sativa}, partial (68%)
Length = 847
Score = 29.6 bits (65), Expect = 0.40
Identities = 18/42 (42%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Frame = -1
Query: 67 KHQIDQLKEKEKNL---VAENARLSKQVKRNYCPPQPQPQPT 105
K +I+ LKE+EKN+ + R +QVKR+ Q QPQ T
Sbjct: 292 KRKINNLKEEEKNMST*LQG*CRCYEQVKRHRSQQQLQPQQT 167
>TC76720 similar to GP|11121502|emb|CAC14888. putative extensin {Nicotiana
sylvestris}, partial (51%)
Length = 1290
Score = 29.3 bits (64), Expect = 0.52
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +1
Query: 97 PPQPQPQPTTKDHQREDQQPYAESSPSS 124
PP P P PT H P ++SPSS
Sbjct: 643 PPAPTPTPTPSPHSDSPPAPSPDNSPSS 726
>BE941734 similar to GP|7406677|emb| putative ripening-related bZIP protein
{Vitis vinifera}, partial (18%)
Length = 607
Score = 28.1 bits (61), Expect = 1.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 45 QQIEQQLEKSVSVVRARKNQAYKHQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQPQP 104
Q +LE V+ ++ + K Q +++ E +KN V E L ++VKR C + Q P
Sbjct: 71 QAYTMELEAEVAKLKEENEELQKKQ-EEIMELQKNQVKEMMNLQREVKRK-CLRRTQTGP 244
>TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine max},
partial (70%)
Length = 738
Score = 28.1 bits (61), Expect = 1.2
Identities = 16/68 (23%), Positives = 32/68 (46%)
Frame = +1
Query: 62 KNQAYKHQIDQLKEKEKNLVAENARLSKQVKRNYCPPQPQPQPTTKDHQREDQQPYAESS 121
KN + ++ KE EK E + ++ K PP P+P+P + ++ ++P + +
Sbjct: 373 KNPEKPKEPEKPKEPEKPKEPEKPKEPEKPKEKPAPPPPEPKP---EPPKQPEKPKEKPA 543
Query: 122 PSSDVVTE 129
P + E
Sbjct: 544 PPPQPMPE 567
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.126 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,099,150
Number of Sequences: 36976
Number of extensions: 56195
Number of successful extensions: 498
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of query: 138
length of database: 9,014,727
effective HSP length: 86
effective length of query: 52
effective length of database: 5,834,791
effective search space: 303409132
effective search space used: 303409132
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC147014.15