BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147011.10 - phase: 0
(165 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC88282 similar to PIR|T48248|T48248 ABC transporter-like protei... 330 2e-91
TC87785 similar to GP|4204313|gb|AAD10694.1| lcl|prt_seq No defi... 114 2e-26
TC92328 similar to PIR|T52080|T52080 multi resistance protein [i... 35 0.014
TC92877 similar to PIR|F84487|F84487 probable ABC transporter [i... 33 0.068
BE943010 similar to GP|6634763|gb Similar to gb|AF008124 Arabido... 32 0.089
TC91451 similar to GP|22553016|emb|CAD44995. multidrug-resistanc... 32 0.15
TC92097 similar to GP|22553016|emb|CAD44995. multidrug-resistanc... 30 0.34
TC85786 homologue to SP|Q05046|CH62_CUCMA Chaperonin CPN60-2 mi... 29 0.75
BQ153556 homologue to GP|4586576|dbj multidrug resistance protei... 28 1.3
TC77391 similar to GP|14719339|gb|AAK73157.1 putative protein ki... 28 2.2
BQ139036 similar to GP|14423315|g ATP-binding cassette transport... 27 2.9
TC77398 similar to PIR|T49190|T49190 ribosomal protein L1-like p... 27 2.9
BG647636 27 3.7
TC87490 similar to PIR|T52080|T52080 multi resistance protein [i... 27 3.7
BI308927 SP|P51026|YI2A Insertion element IS2A hypothetical 48.2... 27 3.7
TC87000 similar to GP|17104547|gb|AAL34162.1 unknown protein {Ar... 27 4.9
BQ147012 similar to GP|21553579|gb contains similarity to ABC tr... 26 6.4
TC89852 similar to GP|15620063|gb|AAL03490.1 unknown {Rickettsia... 26 6.4
TC83341 weakly similar to GP|8978076|dbj|BAA98104.1 gene_id:K14A... 26 6.4
TC79255 similar to PIR|E96714|E96714 probable DNA-binding protei... 26 6.4
>TC88282 similar to PIR|T48248|T48248 ABC transporter-like protein -
Arabidopsis thaliana, partial (95%)
Length = 1448
Score = 330 bits (845), Expect = 2e-91
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 1 MGLLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIV 60
MGLLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIV
Sbjct: 686 MGLLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIV 865
Query: 61 YVAHGRLELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDG 120
YVAHGRLELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDG
Sbjct: 866 YVAHGRLELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDG 1045
Query: 121 SRVVGGDPARAPVRVTNNGWAAGRLHSTIAGEENFLLSSNRVLRG 165
SRVVGGDPARAPVRVTNNGWAAGRLHSTIAGEENFLLSSNRVLRG
Sbjct: 1046SRVVGGDPARAPVRVTNNGWAAGRLHSTIAGEENFLLSSNRVLRG 1180
>TC87785 similar to GP|4204313|gb|AAD10694.1| lcl|prt_seq No definition line
found {Arabidopsis thaliana}, partial (38%)
Length = 1216
Score = 114 bits (284), Expect = 2e-26
Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +2
Query: 1 MGLLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIV 60
+GLL P++VLLLDE+TVDLDV+ R DLL+F ++EC++R AT++YATHIFDGLE W T++
Sbjct: 596 LGLLHPYKVLLLDEVTVDLDVVTRMDLLEFFKEECEQREATVVYATHIFDGLETWATHLA 775
Query: 61 YVAHGRLELAMPIEKVKE-TSKLSLMRTVEVWLRKERDEDRRQ 102
Y+ G L A I V E S ++L+ VE WLR E ++++
Sbjct: 776 YIQEGELRRAEKISDVNELKSSINLLSVVESWLRAETKLEKKK 904
>TC92328 similar to PIR|T52080|T52080 multi resistance protein [imported] -
Arabidopsis thaliana, partial (18%)
Length = 1133
Score = 35.0 bits (79), Expect = 0.014
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 2/161 (1%)
Frame = +1
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYV 62
LLK ++L+LDE T +D + K +R E + T++ H + D ++ +
Sbjct: 559 LLKQSKILVLDEATASVDTATDNLIQKIIRTEF--KDCTVLTIAHRIPTVID-SDQVLVL 729
Query: 63 AHGRL-ELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEF-DKQVDG 120
+ GR+ E P+ +++ S + L E +++G+PEF + +
Sbjct: 730 SDGRVAEFDTPLRLLEDRSSMFLKLVTEY--------------SSRSSGIPEF*IRSMLR 867
Query: 121 SRVVGGDPARAPVRVTNNGWAAGRLHSTIAGEENFLLSSNR 161
+ +VG + ++ + W LH+ + NR
Sbjct: 868 NIIVGSGQSMKTIQKSKQSWMMPPLHAIATDAFGACIDQNR 990
>TC92877 similar to PIR|F84487|F84487 probable ABC transporter [imported]
- Arabidopsis thaliana, partial (8%)
Length = 521
Score = 32.7 bits (73), Expect = 0.068
Identities = 22/65 (33%), Positives = 33/65 (49%)
Frame = +3
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYV 62
LLK +VL LDE T +D+ + L + EC +G T+I H + + NI+ +
Sbjct: 24 LLKSSKVLCLDECTASVDIQTASLLQSTISSEC--KGMTVITIAHRISTVINL-DNILIL 194
Query: 63 AHGRL 67
HG L
Sbjct: 195DHGNL 209
>BE943010 similar to GP|6634763|gb Similar to gb|AF008124 Arabidopsis
thaliana glutathione S-conjugate transporting ATPase
(AtMRP1), partial (15%)
Length = 629
Score = 32.3 bits (72), Expect = 0.089
Identities = 23/72 (31%), Positives = 37/72 (50%)
Frame = +2
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYV 62
LL+ +VL+LDE T +DV A + K +R+EC+ T++ H + + D ++
Sbjct: 407 LLRRSKVLVLDEATASVDVRTDALIQKTIRQECN--SCTMLIIAHRLNTVVDCNRILLLD 580
Query: 63 AHGRLELAMPIE 74
A LE P E
Sbjct: 581 AGKVLEYNSPKE 616
>TC91451 similar to GP|22553016|emb|CAD44995. multidrug-resistance related
protein {Arabidopsis thaliana}, partial (8%)
Length = 711
Score = 31.6 bits (70), Expect = 0.15
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +1
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYV 62
LLK ++L+LDE T +D A L + +R+E E T+I H + D ++ +
Sbjct: 58 LLKRNKILVLDEATASIDSATDAILQRVIRQEFAE--CTVITIAHRIPTVID-SDMVMIL 228
Query: 63 AHGRLELAMPIEKVKETSKLSLMRTVEVW 91
++G+L K+ ET+ E W
Sbjct: 229 SYGKLVEYDEPSKLMETNSSFSKLVAEYW 315
>TC92097 similar to GP|22553016|emb|CAD44995. multidrug-resistance related
protein {Arabidopsis thaliana}, partial (25%)
Length = 1011
Score = 30.4 bits (67), Expect = 0.34
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATH 47
LLK ++L+LDE T +D A L + +R+E +E T+I H
Sbjct: 809 LLKRNRILVLDEATASIDSATDAILQRIIRQEFEE--CTVITVAH 937
>TC85786 homologue to SP|Q05046|CH62_CUCMA Chaperonin CPN60-2 mitochondrial
precursor (HSP60-2). [Pumpkin Winter squash] {Cucurbita
maxima}, partial (58%)
Length = 1259
Score = 29.3 bits (64), Expect = 0.75
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Frame = +2
Query: 29 KFLRKECDERGATIIYATHIFDGL---EDWPTNIVYVAHGRLELAMPIEKVKETSKLSL 84
K LRK+ G + A I G+ +DWP+ +V + RLE + ++ V++ +L +
Sbjct: 395 KLLRKDVSRSGLQLKIALQIMTGINYRKDWPSFLVVLPCLRLEELVKLKLVRKRIELQM 571
>BQ153556 homologue to GP|4586576|dbj multidrug resistance protein {Cicer
arietinum}, partial (44%)
Length = 387
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/83 (22%), Positives = 38/83 (44%)
Frame = +2
Query: 8 QVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRL 67
+VLLLDE T LD ++ ++ L K +G T+I +H ++ + V G +
Sbjct: 104 EVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLVVDGEI 283
Query: 68 ELAMPIEKVKETSKLSLMRTVEV 90
+ ++ + + R +E+
Sbjct: 284 VEXLKPNQLSQANHPMARRFLEL 352
>TC77391 similar to GP|14719339|gb|AAK73157.1 putative protein kinase {Oryza
sativa}, partial (82%)
Length = 1753
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 133 VRVTNNGWAAGRLHSTIAGEENFLLSSN 160
+RV NGW L STI+G + L+SSN
Sbjct: 646 IRVIENGW----LKSTISGNFSILISSN 717
>BQ139036 similar to GP|14423315|g ATP-binding cassette transporter Atr5
{Mycosphaerella graminicola}, partial (14%)
Length = 673
Score = 27.3 bits (59), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 5 KPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATII 43
KP ++ LDE T LD A + ++FLRK D A ++
Sbjct: 133 KPSILIFLDEPTSGLDGQAAFNTVRFLRKLADVGQAVLV 249
>TC77398 similar to PIR|T49190|T49190 ribosomal protein L1-like protein -
Arabidopsis thaliana, partial (70%)
Length = 1430
Score = 27.3 bits (59), Expect = 2.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 68 ELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPE 113
+L I VKET+K + TVE R D ++ R LP+
Sbjct: 514 DLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPK 651
>BG647636
Length = 803
Score = 26.9 bits (58), Expect = 3.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 32 RKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLELAMPIEKVKETSKLSLMR 86
R E D + Y + D L +++ ++ H RL LA + V+ LSL R
Sbjct: 267 RWEVDSIEGYLNYTKSLLDVLNSISSSLSHLGHARLSLAHGLTLVENKKPLSLAR 431
>TC87490 similar to PIR|T52080|T52080 multi resistance protein [imported] -
Arabidopsis thaliana, partial (19%)
Length = 927
Score = 26.9 bits (58), Expect = 3.7
Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 3 LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYV 62
LLK ++L+LDE T +D + K +R+E R T+ H + D +++V V
Sbjct: 619 LLKQSKILVLDEATASVDSATDNLIQKVIREEF--RDCTVCTIAHRIPTVID--SDLVLV 786
Query: 63 AHGRL--ELAMPIEKVKETSKLSLMRTVE 89
+ L E P+ +++ S + L E
Sbjct: 787 LNDGLLAEFDTPLRLLEDKSSMFLKLVTE 873
>BI308927 SP|P51026|YI2A Insertion element IS2A hypothetical 48.2 kDa
protein. {Escherichia coli}, partial (54%)
Length = 694
Score = 26.9 bits (58), Expect = 3.7
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 68 ELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVVGGD 127
ELA ++++KE +L +T+E L KE E R +K A L D + S VV G
Sbjct: 74 ELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE*A*SAVVSGC 253
Query: 128 PARAPVRVTN---NGWAA 142
R+ ++ GW A
Sbjct: 254 RVRSCTSFSDEPMTGWMA 307
>TC87000 similar to GP|17104547|gb|AAL34162.1 unknown protein {Arabidopsis
thaliana}, partial (79%)
Length = 762
Score = 26.6 bits (57), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (53%)
Frame = +3
Query: 100 RRQRKERKAAGLPEFDKQVDGSRVVGGDPARAPVRVT 136
R++ KE A G+P +++ + GDP P++ T
Sbjct: 54 RKEEKEVMAVGVPVYERNGIPPNAIIGDPKGIPIQQT 164
>BQ147012 similar to GP|21553579|gb contains similarity to ABC transporter
ATP-binding protein {Arabidopsis thaliana}, partial
(44%)
Length = 556
Score = 26.2 bits (56), Expect = 6.4
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +2
Query: 9 VLLLDEITVDLDVLARAD---LLKFLRKECDERGATIIYATH 47
+L+LDE LD ARAD LLK L+KE T++ +H
Sbjct: 245 LLILDEPLAGLDWKARADVVKLLKHLKKE-----LTVLVVSH 355
>TC89852 similar to GP|15620063|gb|AAL03490.1 unknown {Rickettsia conorii},
partial (22%)
Length = 1001
Score = 26.2 bits (56), Expect = 6.4
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +1
Query: 80 SKLSLMRTVEVWLRKERDEDRRQRKERKA 108
S+LS+++ +VW+ K ++ R++++RKA
Sbjct: 325 SQLSMIKKRKVWIPKMTRKNPREKRKRKA 411
>TC83341 weakly similar to GP|8978076|dbj|BAA98104.1 gene_id:K14A3.4~unknown
protein {Arabidopsis thaliana}, partial (80%)
Length = 1253
Score = 26.2 bits (56), Expect = 6.4
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Frame = +1
Query: 66 RLELAMPIEKVK-ETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVV 124
R E A+ + K++ E ++ + R+ W+ E ++ + +E + E D V+ V
Sbjct: 490 RCEEAVIVAKIRGEQERIGVPRSE--WIGNEGLQEEEEEEEEEEEEEEEDDDDVEKDETV 663
Query: 125 G--------------GDPARAPVRVTNNGW---AAGRLHSTIAGEE 153
DPAR VTNNG A R T++ EE
Sbjct: 664 EQIHVPQPDVSDNGTSDPARMRHDVTNNGTSDAARARQDPTLSSEE 801
>TC79255 similar to PIR|E96714|E96714 probable DNA-binding protein T6L1.19
[imported] - Arabidopsis thaliana, partial (30%)
Length = 847
Score = 26.2 bits (56), Expect = 6.4
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = -1
Query: 80 SKLSLMRTVEVWLRKERDEDRRQRKERKAA 109
S+ ++ TV +LR+E+D ++R+ERK +
Sbjct: 118 SERMMIYTVVEFLRREKDMSNQRRRERKVS 29
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,200,088
Number of Sequences: 36976
Number of extensions: 44716
Number of successful extensions: 236
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of query: 165
length of database: 9,014,727
effective HSP length: 89
effective length of query: 76
effective length of database: 5,723,863
effective search space: 435013588
effective search space used: 435013588
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147011.10