BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147010.3 - phase: 0 /pseudo
(675 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90604 weakly similar to PIR|B96760|B96760 probable homeobox pr... 224 5e-80
TC84732 homologue to GP|14334996|gb|AAK59762.1 At1g05230/YUP8H12... 164 1e-40
TC81531 homologue to GP|3925363|gb|AAC79430.1| homeodomain prote... 113 3e-25
BI312112 similar to GP|22475195|gb homeodomain protein GhHOX1 {G... 105 4e-23
BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-speci... 97 2e-20
BQ139155 similar to GP|3925363|gb| homeodomain protein {Malus x ... 91 2e-18
AW694953 similar to GP|14334996|gb At1g05230/YUP8H12_16 {Arabido... 84 1e-16
TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine... 49 5e-06
TC77101 similar to GP|15148920|gb|AAK84887.1 homeodomain leucine... 47 2e-05
TC90396 similar to PIR|H96719|H96719 homeobox gene 13 protein 1... 44 2e-04
TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper pro... 44 2e-04
TC79846 similar to GP|8843728|dbj|BAA97276.1 homeodomain transcr... 42 6e-04
TC85737 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine... 42 6e-04
BI272824 similar to GP|1814424|gb|A homeodomain protein AHDP {Ar... 42 0.001
TC79046 similar to PIR|T12634|T12634 homeotic protein - common s... 42 0.001
TC78257 similar to PIR|T47981|T47981 homeobox-leucine zipper pro... 42 0.001
BG647110 homologue to PIR|T10695|T10 transcription factor HD-zip... 40 0.002
TC91273 similar to GP|1435022|dbj|BAA05625.1 DNA-binding protein... 40 0.002
TC86390 similar to PIR|T52371|T52371 homeobox protein HAT9 [impo... 40 0.002
TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine... 40 0.003
>TC90604 weakly similar to PIR|B96760|B96760 probable homeobox protein
T9L24.43 [imported] - Arabidopsis thaliana, partial (8%)
Length = 1097
Score = 224 bits (570), Expect(2) = 5e-80
Identities = 107/122 (87%), Positives = 115/122 (93%)
Frame = +1
Query: 474 LDSIGGVRVSIRATTDDDASQPNGTVVTAATTLWLPLPAQKVFEFLKDPTKRSQWNGLSC 533
L ++ G RVS+R TTD+D SQPNGTVVTAATTLWLPLPAQKVFE LKDPTKRSQW+GLSC
Sbjct: 562 LIALVGFRVSLRDTTDNDTSQPNGTVVTAATTLWLPLPAQKVFELLKDPTKRSQWDGLSC 741
Query: 534 GNPMHEIAHISNGPYHGNCISVIKSFIPTQRQMVILQESFTSSVGSYVIYAPIDRKTMDV 593
GNPMHEIAHISNGPYHGNCIS+IKSFIPTQRQMVILQESFTS VGSY+IYAPIDRKT+DV
Sbjct: 742 GNPMHEIAHISNGPYHGNCISIIKSFIPTQRQMVILQESFTSPVGSYIIYAPIDRKTVDV 921
Query: 594 AL 595
AL
Sbjct: 922 AL 927
Score = 93.2 bits (230), Expect(2) = 5e-80
Identities = 47/55 (85%), Positives = 48/55 (86%)
Frame = +3
Query: 426 EAIPVEETIGVIQTLEGRNSVIKLADRMVKMFCECLTMPGQVELNHLTLDSIGGV 480
EA E +IQTLEGRNSVIKLADRMVKMFCECLTMPGQVELNHLTLDSIGGV
Sbjct: 417 EAEEATEERRLIQTLEGRNSVIKLADRMVKMFCECLTMPGQVELNHLTLDSIGGV 581
>TC84732 homologue to GP|14334996|gb|AAK59762.1 At1g05230/YUP8H12_16
{Arabidopsis thaliana}, partial (35%)
Length = 808
Score = 164 bits (415), Expect = 1e-40
Identities = 100/270 (37%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Frame = +3
Query: 405 GAESWIKELQRMCERSLGSNVEAIPVEETIGVIQTLEGRNSVIKLADRMVKMFCECLTMP 464
GA+ WI L R CER + IP + +GVI +GR S++KLA+RM FC ++
Sbjct: 3 GAKRWIATLDRQCERLASAMATNIPTVD-VGVITNQDGRKSMLKLAERMCISFCAGVSAS 179
Query: 465 GQVELNHLTLDSIGGVRVSIRATTDDDASQPNGTVVTAATTLWLPLPAQKVFEFLKDPTK 524
L+ VRV R + DD +P G V++AAT+ WLP+P ++VFEFL+D
Sbjct: 180 TAHTWTTLSGTGADDVRVMTRKSVDDPG-RPAGIVLSAATSFWLPVPPKRVFEFLRDENS 356
Query: 525 RSQWNGLSCGNPMHEIAHISNGPYHGNCISVIK--SFIPTQRQMVILQESFTSSVGSYVI 582
RS+W+ LS G + E+AHI+NG GNC+S+++ S +Q M+ILQES T + GS+VI
Sbjct: 357 RSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVI 536
Query: 583 YAPIDRKTMDVALRGEDSKELPILPYGLIVCSKNQANLNAPFGASKSIEDGSLITLAAQT 642
YAP+D M+V L G D + +LP G + + GSL+T+A Q
Sbjct: 537 YAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTNGGKVLVKLDMGGGSLLTVALQI 716
Query: 643 YAIG---QVLNVDSLNDINSQLASTILNVK 669
L++ S+ +N+ +A T +K
Sbjct: 717 LVDSVPTAKLSLGSVATVNNLIACTGERIK 806
>TC81531 homologue to GP|3925363|gb|AAC79430.1| homeodomain protein {Malus x
domestica}, partial (25%)
Length = 888
Score = 113 bits (282), Expect = 3e-25
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 11/179 (6%)
Frame = +3
Query: 505 TLWLPLPAQKVFEFLKDPTKRSQWNGLSCGNPMHEIAHISNGPYHGNCISVIK--SFIPT 562
++WLP+ Q++F+FL+D RS+W+ LS G PM E+AHI+ G HGNC+S+++ +
Sbjct: 3 SVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSN 182
Query: 563 QRQMVILQESFTSSVGSYVIYAPIDRKTMDVALRGEDSKELPILPYGLIVC-----SKNQ 617
Q M+ILQE+ GS V+YAP+D M V + G DS + +LP G + S+
Sbjct: 183 QSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGL 362
Query: 618 ANLNAPF-GASKSIEDGSLITLAAQTYAIG---QVLNVDSLNDINSQLASTILNVKDAL 672
N +A G ++ GSL+T+A Q L V+S+ +N+ ++ T+ +K AL
Sbjct: 363 ENGDATANGGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 539
>BI312112 similar to GP|22475195|gb homeodomain protein GhHOX1 {Gossypium
hirsutum}, partial (27%)
Length = 727
Score = 105 bits (263), Expect = 4e-23
Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 6/199 (3%)
Frame = +2
Query: 480 VRVSIRATTDDDASQPNGTVVTAATTLWLPLPAQKVFEFLKDPTKRSQWNGLSCGNPMHE 539
+R+S R +D S+P G +V A +++WLP+ +F+FL+D T+R++W+ +S G +
Sbjct: 26 IRISSRKNLNDP-SEPLGLIVCAVSSIWLPISPNVLFDFLRDETRRTEWDIMSNGGTVQS 202
Query: 540 IAHISNGPYHGNCISVIKSFIPTQRQMVILQESFTSSVGSYVIYAPIDRKTMDVALRGED 599
IA+++ G GN ++ I++ + M ILQ+S T+S S V+YAP D + + G D
Sbjct: 203 IANLAKGQDRGNAVT-IQTIKSKENNMWILQDSCTNSYESMVVYAPADITGIQSVMTGCD 379
Query: 600 SKELPILPYGLIVCS---KNQANLNAPFGASKSIEDGSLITLAAQTYAIGQ---VLNVDS 653
S L ILP G + S +++ + K+ E GSL T+A Q L ++S
Sbjct: 380 SSNLAILPSGFSIVSDGLESRQMVITSRREEKNTEGGSLFTIAFQILTNASPTAKLTMES 559
Query: 654 LNDINSQLASTILNVKDAL 672
++ +NS ++ T+ ++K +L
Sbjct: 560 VDSMNSLVSCTLRHIKTSL 616
>BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-specific -
Phalaenopsis sp., partial (19%)
Length = 661
Score = 97.1 bits (240), Expect = 2e-20
Identities = 45/101 (44%), Positives = 67/101 (65%)
Frame = +3
Query: 2 KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENL 61
KEC HPD+ QR +L+ ++GLEP Q+K WFQNKR +K QHER N LR +N+K+R +N+
Sbjct: 192 KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRADNEKLRADNM 371
Query: 62 KIKEELKAKICLDCGGSPFPMKDHQNFVQEMKQENAQLKQE 102
+ +E L C +CGG P + + ++ ENA+L++E
Sbjct: 372 RYREALSNASCPNCGG-PTAIGEMSFDEHHLRLENARLREE 491
>BQ139155 similar to GP|3925363|gb| homeodomain protein {Malus x domestica},
partial (24%)
Length = 505
Score = 90.5 bits (223), Expect = 2e-18
Identities = 44/111 (39%), Positives = 67/111 (59%), Gaps = 3/111 (2%)
Frame = +1
Query: 278 LFPTIVTKAETIKVFEIGSRGSRDGALLLMNEEMHILSPLVRPREFNIIRYCKKVDPGVW 337
+FP ++ ++ T +V G G+R+GAL LM E+ +LSPLV RE + +R+CK+ GVW
Sbjct: 169 MFPCVIARSSTTEVISSGINGTRNGALQLMQAELQVLSPLVPVREVSFLRFCKQHAEGVW 348
Query: 338 VITDVSFDSSRPNTA---PLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVE 385
+ DVS D+ +A + PSG ++++MP+G VTWVEH E
Sbjct: 349 AVVDVSIDTIXETSAGAPTFLTCRRLPSGXVVQDMPNGYSKVTWVEHAXYE 501
>AW694953 similar to GP|14334996|gb At1g05230/YUP8H12_16 {Arabidopsis
thaliana}, partial (16%)
Length = 404
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/118 (38%), Positives = 71/118 (60%)
Frame = +2
Query: 436 VIQTLEGRNSVIKLADRMVKMFCECLTMPGQVELNHLTLDSIGGVRVSIRATTDDDASQP 495
VI +G+ S++KLA+RM FC ++ L+ VRV R + +D +P
Sbjct: 53 VITNQDGKKSMLKLAERMCITFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVNDP-ERP 229
Query: 496 NGTVVTAATTLWLPLPAQKVFEFLKDPTKRSQWNGLSCGNPMHEIAHISNGPYHGNCI 553
G V++AAT+ WLP+P ++VFEFLK+ +S+W+ LS G + ++AHI+NG GN +
Sbjct: 230 AGIVLSAATSFWLPVPPKRVFEFLKNENSKSEWDILSNGGVVQKMAHIANGKNTGNWV 403
>TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine zipper
protein HDZ2 {Phaseolus vulgaris}, partial (87%)
Length = 1519
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/66 (36%), Positives = 41/66 (61%), Gaps = 7/66 (10%)
Frame = +1
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRN-------ENLKI 63
++ QLA ++GL+P+Q+ WFQN+RA K + + GTL+ D +++ EN K+
Sbjct: 811 RKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKL 990
Query: 64 KEELKA 69
KEE+ +
Sbjct: 991 KEEVNS 1008
>TC77101 similar to GP|15148920|gb|AAK84887.1 homeodomain leucine zipper
protein HDZ3 {Phaseolus vulgaris}, complete
Length = 1532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 14/74 (18%)
Frame = +1
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLK-HQHERE-------------TNGTLRRENDKI 56
++ QLA K+GL+P+Q+ WFQN+RA K Q ER+ T ++ +EN+K+
Sbjct: 709 RKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSINKENEKL 888
Query: 57 RNENLKIKEELKAK 70
++E + + E+L+ +
Sbjct: 889 KSEVVSLNEKLQVQ 930
>TC90396 similar to PIR|H96719|H96719 homeobox gene 13 protein 11736-10437
[imported] - Arabidopsis thaliana, partial (41%)
Length = 997
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/72 (34%), Positives = 42/72 (57%), Gaps = 7/72 (9%)
Frame = +1
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLK-HQHERETN------GTLRRENDKIRNENLKI 63
++ QLA +GL+P+Q+ WFQN+RA K Q E+E +L+ +N+ ++ +N K+
Sbjct: 340 RKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNNTLKAQNNKL 519
Query: 64 KEELKAKICLDC 75
EL+ DC
Sbjct: 520 HAELQTLKKRDC 555
>TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper protein
homolog h1 - soybean, partial (73%)
Length = 1238
Score = 43.9 bits (102), Expect = 2e-04
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +1
Query: 2 KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENL 61
KE + + Q+ LA ++GL P+Q++ WFQN+RA K + L+R + + EN
Sbjct: 553 KEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENR 732
Query: 62 KIKEELK 68
++++E++
Sbjct: 733 RLQKEVQ 753
>TC79846 similar to GP|8843728|dbj|BAA97276.1 homeodomain transcription
factor-like {Arabidopsis thaliana}, partial (42%)
Length = 679
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/77 (29%), Positives = 46/77 (58%), Gaps = 14/77 (18%)
Frame = +2
Query: 5 HHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRREND---------- 54
H + ++ +LA+++GL+P+Q+ WFQN+RA K++ E +L++ ++
Sbjct: 320 HKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKNHESTILEKCLLE 499
Query: 55 -KIR---NENLKIKEEL 67
K+R +E LK++E+L
Sbjct: 500 TKLREQHSEALKLREQL 550
>TC85737 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine zipper
protein 56 {Glycine max}, partial (63%)
Length = 1622
Score = 42.4 bits (98), Expect = 6e-04
Identities = 27/97 (27%), Positives = 50/97 (50%)
Frame = +2
Query: 14 QLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENLKIKEELKAKICL 73
+LA+++GL+P+Q+ WFQN+RA K + G L+ D LK+K + A
Sbjct: 641 KLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDA-----LKLKFDAIA---- 793
Query: 74 DCGGSPFPMKDHQNFVQEMKQENAQLKQEASEFIYLI 110
+D++ F +E+K+ ++L +E I ++
Sbjct: 794 ---------QDNKAFHKEIKELKSKLGEEEKSTINVL 877
>BI272824 similar to GP|1814424|gb|A homeodomain protein AHDP {Arabidopsis
thaliana}, partial (8%)
Length = 268
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/47 (38%), Positives = 32/47 (67%)
Frame = +1
Query: 566 MVILQESFTSSVGSYVIYAPIDRKTMDVALRGEDSKELPILPYGLIV 612
M+ILQE++ + S V+YAP+D ++++V + G DS + +LP G +
Sbjct: 46 MLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAI 186
>TC79046 similar to PIR|T12634|T12634 homeotic protein - common sunflower,
partial (56%)
Length = 1136
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/66 (31%), Positives = 38/66 (56%), Gaps = 7/66 (10%)
Frame = +2
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRR-------ENDKIRNENLKI 63
++ QLA + L+P+Q+ WFQN+RA K + + L+R +ND ++ +N K+
Sbjct: 479 RKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKL 658
Query: 64 KEELKA 69
+ E+ A
Sbjct: 659 QAEILA 676
>TC78257 similar to PIR|T47981|T47981 homeobox-leucine zipper protein
ATHB-12 - Arabidopsis thaliana, partial (45%)
Length = 994
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/62 (40%), Positives = 36/62 (57%), Gaps = 2/62 (3%)
Frame = +2
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRN--ENLKIKEELK 68
++ QLA ++GL+P+Q+ WFQNKRA K + L RE +K++N NL K E
Sbjct: 323 KKLQLARELGLQPRQVAIWFQNKRARWKSKQ-------LEREYNKLQNSYNNLASKFESM 481
Query: 69 AK 70
K
Sbjct: 482 KK 487
>BG647110 homologue to PIR|T10695|T10 transcription factor HD-zip -
Arabidopsis thaliana, partial (16%)
Length = 844
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 3 ECHHPDEAQRCQLA----VKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRN 58
EC P +R QL + +EPKQIK WFQN+R + +R+ G L+ N K+
Sbjct: 202 ECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRC---REKQRKEAGRLQAVNRKLTA 372
Query: 59 ENLKIKEE 66
N + EE
Sbjct: 373 MNKLLMEE 396
>TC91273 similar to GP|1435022|dbj|BAA05625.1 DNA-binding protein {Daucus
carota}, partial (33%)
Length = 722
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIR 57
++ QLA +GL+P+QI WFQN+RA K + + L R+ D I+
Sbjct: 580 RKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLXRQYDTIK 720
>TC86390 similar to PIR|T52371|T52371 homeobox protein HAT9 [imported] -
Arabidopsis thaliana, partial (58%)
Length = 1288
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/58 (32%), Positives = 36/58 (61%)
Frame = +2
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENLKIKEELK 68
Q+ LA ++ L P+Q++ WFQN+RA K + L++ + + +EN ++K+EL+
Sbjct: 689 QKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQ 862
>TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine zipper
protein 56 {Glycine max}, partial (77%)
Length = 2144
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/62 (33%), Positives = 36/62 (57%), Gaps = 2/62 (3%)
Frame = +3
Query: 11 QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRREND--KIRNENLKIKEELK 68
++ +LA ++GL+P+Q+ WFQN+RA K + G L+ D K+ E+L+ +E
Sbjct: 1128 RKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCEDLQRDKETL 1307
Query: 69 AK 70
K
Sbjct: 1308 LK 1313
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.330 0.142 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,274,780
Number of Sequences: 36976
Number of extensions: 358194
Number of successful extensions: 2103
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 2080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of query: 675
length of database: 9,014,727
effective HSP length: 103
effective length of query: 572
effective length of database: 5,206,199
effective search space: 2977945828
effective search space used: 2977945828
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC147010.3