BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147001.13 + phase: 0
(136 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ501216 homologue to GP|1435157|emb histone H3 variant H3.3 {Ly... 255 4e-69
TC85197 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 249 2e-67
TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 249 2e-67
TC76927 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 249 2e-67
TC85156 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 249 2e-67
TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 248 4e-67
TC87557 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
TC86632 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
TC81197 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
TC77273 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Ar... 240 1e-64
TC89120 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
TC78424 PIR|A26014|A26014 histone H3 - wheat, complete 240 1e-64
BI263077 GP|21702714|g histone H3 {Hypocrea jecorina}, complete 228 4e-61
TC88838 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 228 6e-61
TC81730 PIR|A26014|A26014 histone H3 - wheat, partial (94%) 227 1e-60
TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 226 2e-60
TC92301 PIR|A26014|A26014 histone H3 - wheat, complete 121 3e-58
AW980465 PIR|A26014|A26 histone H3 - wheat, partial (98%) 211 9e-58
TC83567 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 189 3e-49
>AJ501216 homologue to GP|1435157|emb histone H3 variant H3.3 {Lycopersicon
esculentum}, partial (96%)
Length = 450
Score = 255 bits (651), Expect = 4e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE
Sbjct: 58 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 237
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV
Sbjct: 238 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 417
Query: 121 MVKDIQLARRI 131
MVKDIQLARRI
Sbjct: 418 MVKDIQLARRI 450
>TC85197 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 1332
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 566 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 745
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 746 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 925
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 926 MPKDIQLARRIRGERA 973
>TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 695
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 68 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 247
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 248 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 427
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 428 MPKDIQLARRIRGERA 475
>TC76927 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 741
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 104 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 283
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 284 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 463
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 464 MPKDIQLARRIRGERA 511
>TC85156 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 754
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 61 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 240
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 241 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 420
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 421 MPKDIQLARRIRGERA 468
>TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 1440
Score = 248 bits (634), Expect = 4e-67
Identities = 125/136 (91%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK T+
Sbjct: 53 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTD 232
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 233 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 412
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 413 MPKDIQLARRIRGERA 460
>TC87557 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 621
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC86632 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 640
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 84 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 263
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 264 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 443
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 444 MPKDIQLARRIRGERA 491
>TC81197 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 646
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 67 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 246
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 247 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 426
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 427 MPKDIQLARRIRGERA 474
>TC77273 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 697
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Arabidopsis
thaliana}, partial (80%)
Length = 2013
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 75 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 254
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 255 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 434
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 435 MPKDIQLARRIRGERA 482
>TC89120 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 652
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 50 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 229
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 230 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 409
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 410 MPKDIQLARRIRGERA 457
>TC78424 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 652
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 240
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 241 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 420
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 421 MPKDIQLARRIRGERA 468
>BI263077 GP|21702714|g histone H3 {Hypocrea jecorina}, complete
Length = 682
Score = 228 bits (582), Expect = 4e-61
Identities = 113/135 (83%), Positives = 127/135 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLA+KAARKS P+TGG+KKPHRY+PGTVALREIR+YQK TE
Sbjct: 92 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTE 271
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FK+DLRFQS A+ ALQE+VE+YLV LFEDTNLCAIHAKR+T+
Sbjct: 272 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTI 451
Query: 121 MVKDIQLARRIRGER 135
KDIQLARR+RGER
Sbjct: 452 QSKDIQLARRLRGER 496
>TC88838 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, complete
Length = 730
Score = 228 bits (581), Expect = 6e-61
Identities = 115/136 (84%), Positives = 125/136 (91%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHRYRPGTVALREIR+YQK T+
Sbjct: 108 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKTTD 287
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA EAYLV LFEDTNL AIHAKR+T+
Sbjct: 288 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNLAAIHAKRVTI 467
Query: 121 MVKDIQLARRIRGERA 136
KDIQLARR+RGER+
Sbjct: 468 QPKDIQLARRLRGERS 515
>TC81730 PIR|A26014|A26014 histone H3 - wheat, partial (94%)
Length = 571
Score = 227 bits (578), Expect = 1e-60
Identities = 116/136 (85%), Positives = 126/136 (92%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
+ ++KQ+ R+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 38 LVQSKQS-RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 214
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 215 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 394
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 395 MPKDIQLARRIRGERA 442
>TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, partial (98%)
Length = 654
Score = 226 bits (577), Expect = 2e-60
Identities = 114/136 (83%), Positives = 124/136 (90%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
+ARTKQTAR+ST GKAPRKQLATKAARKS P GG+KKPHRYRPGTVALREIR+YQK TE
Sbjct: 38 VARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRPGTVALREIRRYQKSTE 217
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA EAYLV LFEDTNL AIHAKR+T+
Sbjct: 218 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNLAAIHAKRVTI 397
Query: 121 MVKDIQLARRIRGERA 136
KDIQLARR+RGER+
Sbjct: 398 QPKDIQLARRLRGERS 445
>TC92301 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 557
Score = 121 bits (303), Expect(2) = 3e-58
Identities = 62/73 (84%), Positives = 66/73 (89%)
Frame = +3
Query: 64 RKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITVMVK 123
+K FQRLVREIAQ+FKT LRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+M K
Sbjct: 201 KKTSFQRLVREIAQDFKTYLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 380
Query: 124 DIQLARRIRGERA 136
DIQLARRIRGERA
Sbjct: 381 DIQLARRIRGERA 419
Score = 119 bits (299), Expect(2) = 3e-58
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 192
Query: 61 LLIRKL 66
LLIRKL
Sbjct: 193LLIRKL 210
>AW980465 PIR|A26014|A26 histone H3 - wheat, partial (98%)
Length = 607
Score = 211 bits (538), Expect(2) = 9e-58
Identities = 107/122 (87%), Positives = 113/122 (91%)
Frame = +2
Query: 15 KAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTELLIRKLPFQRLVRE 74
K+ KQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TELLIRKLPFQRLVRE
Sbjct: 71 KSRGKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVRE 250
Query: 75 IAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITVMVKDIQLARRIRGE 134
IAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+M KDIQLARRIRGE
Sbjct: 251 IAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 430
Query: 135 RA 136
RA
Sbjct: 431 RA 436
Score = 27.7 bits (60), Expect(2) = 9e-58
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 1 MARTKQTARRSTLGKA 16
MARTK TAR+ST GKA
Sbjct: 30 MARTKHTARKSTGGKA 77
>TC83567 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, partial (81%)
Length = 454
Score = 189 bits (480), Expect = 3e-49
Identities = 96/110 (87%), Positives = 101/110 (91%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P GG+KKPHRYRPGTVALREIR+YQK TE
Sbjct: 120 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRPGTVALREIRRYQKSTE 299
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNL 110
LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA EAYLV LFEDTNL
Sbjct: 300 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNL 449
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,706,096
Number of Sequences: 36976
Number of extensions: 25450
Number of successful extensions: 148
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of query: 136
length of database: 9,014,727
effective HSP length: 86
effective length of query: 50
effective length of database: 5,834,791
effective search space: 291739550
effective search space used: 291739550
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)
Medicago: description of AC147001.13