Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.5 - phase: 0 
         (221 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC81684 weakly similar to GP|21593080|gb|AAM65029.1 unknown {Ara...   445  e-126
TC78205 homologue to PIR|T47559|T47559 60S ribosomal protein-lik...    31  0.33
TC90881 weakly similar to GP|21327989|dbj|BAC00578. contains EST...    30  0.73
TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ...    30  0.96
TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ...    30  0.96
TC91964 similar to GP|23496165|gb|AAN35825.1 hypothetical protei...    29  1.6
TC86770 similar to GP|13872875|dbj|BAB43982. contains EST AU0965...    29  1.6
TC85980 similar to GP|15294146|gb|AAK95250.1 AT4g18030/T6K21_210...    28  2.1
TC86716 similar to PIR|T14279|T14279 myosin-like protein my5 - c...    28  2.1
TC76681 homologue to SP|O22585|AMYB_MEDSA Beta-amylase (EC 3.2.1...    28  2.1
TC90656 similar to PIR|G96810|G96810 unknown protein T11I11.9 [i...    28  2.1
TC81709 similar to PIR|T05867|T05867 hypothetical protein T29A15...    28  2.8
TC81530 similar to GP|10177440|dbj|BAB10736. gb|AAC55944.1~gene_...    28  2.8
BG587062 similar to GP|19881001|gb chemiosmotic efflux system B ...    28  2.8
TC88759 similar to GP|16588826|gb|AAL26909.1 dehydration-respons...    27  6.2
TC76342 similar to PIR|A86444|A86444 probable RNA helicase [impo...    27  6.2
BQ138404 weakly similar to PIR|T14601|T146 plasma membrane major...    27  6.2
BQ144999 homologue to GP|14318171|gb| fructose-1 6-bisphosphatas...    27  8.1
TC79012 similar to GP|13877821|gb|AAK43988.1 unknown protein {Ar...    27  8.1
TC86126 homologue to GP|14318171|gb|AAK59929.1 fructose-1 6-bisp...    27  8.1

>TC81684 weakly similar to GP|21593080|gb|AAM65029.1 unknown {Arabidopsis
           thaliana}, partial (29%)
          Length = 732

 Score =  445 bits (1145), Expect = e-126
 Identities = 221/221 (100%), Positives = 221/221 (100%)
 Frame = +3

Query: 1   MAEEELNNGYCSSSGDEDGDAAWKAAIDSVAGTSSYVTSFMNGFSATNNNDTKKKHNDNQ 60
           MAEEELNNGYCSSSGDEDGDAAWKAAIDSVAGTSSYVTSFMNGFSATNNNDTKKKHNDNQ
Sbjct: 6   MAEEELNNGYCSSSGDEDGDAAWKAAIDSVAGTSSYVTSFMNGFSATNNNDTKKKHNDNQ 185

Query: 61  NPKSPKIKHYQLKALKLLDDILENTIEIVKEPIPVLDEDPNVDDCGIRLFRHSKPGIVFD 120
           NPKSPKIKHYQLKALKLLDDILENTIEIVKEPIPVLDEDPNVDDCGIRLFRHSKPGIVFD
Sbjct: 186 NPKSPKIKHYQLKALKLLDDILENTIEIVKEPIPVLDEDPNVDDCGIRLFRHSKPGIVFD 365

Query: 121 HADEPQPPMKRPKLVPGEDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKD 180
           HADEPQPPMKRPKLVPGEDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKD
Sbjct: 366 HADEPQPPMKRPKLVPGEDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKD 545

Query: 181 AAAKAKAKREEERIEKLKKIRGERWLPSMAKEMQAKIKIKH 221
           AAAKAKAKREEERIEKLKKIRGERWLPSMAKEMQAKIKIKH
Sbjct: 546 AAAKAKAKREEERIEKLKKIRGERWLPSMAKEMQAKIKIKH 668


>TC78205 homologue to PIR|T47559|T47559 60S ribosomal protein-like -
           Arabidopsis thaliana, partial (93%)
          Length = 858

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 21/78 (26%), Positives = 38/78 (47%)
 Frame = +1

Query: 138 EDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKDAAAKAKAKREEERIEKL 197
           +DI +++ K RRR        + + A      KK   + E +DAA +A  +  +ER++K 
Sbjct: 241 KDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKT 420

Query: 198 KKIRGERWLPSMAKEMQA 215
           K  +  +   S AK  ++
Sbjct: 421 KDEKKAKKAESQAKAQKS 474


>TC90881 weakly similar to GP|21327989|dbj|BAC00578. contains ESTs
           AU093876(E1018) AU093877(E1018)~unknown protein, partial
           (10%)
          Length = 655

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 12  SSSGDEDGDAAWKAAIDSVAGTSSYVTSFMNGFSATNNNDTKKKHNDN 59
           S    EDG + WK   D+V G  S      NG  + N N + KK   N
Sbjct: 218 SRDSGEDGSSDWKKGSDNVEGWKS-----NNGSGSWNQNSSDKKDGGN 346


>TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
           [Chickpea  Garbanzo] {Cicer arietinum}, partial (98%)
          Length = 764

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 138 EDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKDAAAKAKAKREEERIEKL 197
           +DI +++ K RRR        + + A      KK   + E +DAA +A  +  +ERI+K 
Sbjct: 259 KDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKT 438

Query: 198 K 198
           K
Sbjct: 439 K 441


>TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
           [Chickpea  Garbanzo] {Cicer arietinum}, partial (98%)
          Length = 725

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 138 EDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKDAAAKAKAKREEERIEKL 197
           +DI +++ K RRR        + + A      KK   + E +DAA +A  +  +ERI+K 
Sbjct: 245 KDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKT 424

Query: 198 K 198
           K
Sbjct: 425 K 427


>TC91964 similar to GP|23496165|gb|AAN35825.1 hypothetical protein
           {Plasmodium falciparum 3D7}, partial (1%)
          Length = 827

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 28  DSVAGTSSYV--TSFMNGFSATNNNDTKKKHNDNQN 61
           D+V GT   V  T F    +  NNN+ K   NDN+N
Sbjct: 367 DNVIGTVDIVSTTDFSENNNDNNNNNDKNNDNDNEN 474


>TC86770 similar to GP|13872875|dbj|BAB43982. contains EST
           AU096506(S14064)~unknown protein {Oryza sativa (japonica
           cultivar-group)}, partial (73%)
          Length = 2061

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
 Frame = +2

Query: 80  DILENTIEIVKEPIPVLDEDPNVDDCGIRLFRHSKPGIVFDHADEPQPPMKRPKLVPGED 139
           D L    E   E    +D+D  +DD G+      +P +     DEP+ P   P+   GE+
Sbjct: 566 DALAGNSEDDNEGARNMDDDNFIDDTGV------EPALY--GYDEPRSPGDAPQAEEGEE 721

Query: 140 IDE---------KSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKDAAAKAKAKRE 190
            DE         K KK  R    IA+   +++A      ++  A L  +   A  K K+ 
Sbjct: 722 DDEIKDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEED-AELNRQHKPAVNKLKKL 898

Query: 191 EERIEKLKK 199
              IE L K
Sbjct: 899 PLLIEVLSK 925


>TC85980 similar to GP|15294146|gb|AAK95250.1 AT4g18030/T6K21_210 {Arabidopsis
            thaliana}, partial (82%)
          Length = 2287

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 61   NPKSPKIKHYQLKALKLLDDILENTIEIVKEPIPVLDEDPNVDDCGIRLFRHSKPGIVFD 120
            N KS + K   L  L   DD+    +E+ K PIP +     V    ++ F    P  +F 
Sbjct: 1401 NAKSCQRKSLNLCDLDNADDVWYKKMEVCKTPIPEVTSQSEVAGGELKKF----PARLF- 1565

Query: 121  HADEPQPPMKRPKLVPG---EDIDEKSKKFRRRIRS 153
                  PP      +PG   E   E +K +++R+ +
Sbjct: 1566 ----AVPPRIAKDAIPGVTVESYQEDNKLWKKRVNN 1661


>TC86716 similar to PIR|T14279|T14279 myosin-like protein my5 - common
           sunflower, partial (38%)
          Length = 2675

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 159 NDLIAAANDAYKKSLARLEAKDAAAKAKAKREEERIEKLKKIRGERWLPSMAKEMQAKIK 218
           N L+A  N   +  L   EAK+ A +A+A+ E    E  KK+          +E+  +++
Sbjct: 251 NSLLAEVNCLKESLLLEREAKEEAKRAQAETEARSKELFKKVEDSDRKADQLQELVQRLE 430

Query: 219 IK 220
            K
Sbjct: 431 EK 436


>TC76681 homologue to SP|O22585|AMYB_MEDSA Beta-amylase (EC 3.2.1.2) (1
            4-alpha-D-glucan maltohydrolase). [Alfalfa] {Medicago
            sativa}, complete
          Length = 1816

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 21/74 (28%), Positives = 38/74 (50%), Gaps = 10/74 (13%)
 Frame = +1

Query: 65   PKIKHYQLKALKLLDDIL-ENTIEIVKEPIPVLD------EDPNVDDCGIRLFRHSKPGI 117
            PK++ Y +  L+L DD++ ++  +I K+ +  +        DP   + GI   + S+P I
Sbjct: 1234 PKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMHADQDYCSDPEKYNHGIPPLKRSEPKI 1413

Query: 118  ---VFDHADEPQPP 128
               V + A +P PP
Sbjct: 1414 PVDVLNEATKPIPP 1455


>TC90656 similar to PIR|G96810|G96810 unknown protein T11I11.9 [imported] -
           Arabidopsis thaliana, partial (24%)
          Length = 1314

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
 Frame = +1

Query: 106 GIRLFRHSKPGIV---FDHADE---PQPPMKRPKLVPGEDID--------EKSKKFRRRI 151
           GIR+++ +  GI    F++ +E   P+ P   P+     ++           SKK     
Sbjct: 394 GIRVYQQAMNGISQISFNNGEEIISPKKPTSLPEAAKQRELGGTLQNEPGTNSKKLMSSS 573

Query: 152 RSIAVDGNDLIAAANDAYKKSLARLEAKD------AAAKAKAKREEERIEKL-KKIRGER 204
           ++  + GND+     +   +SLA +   D      A  ++K    EE  +K  +KI  ++
Sbjct: 574 KTKEIGGNDIFGIPPEIVPRSLAAVHTPDSKVYKAAGVRSKVVSGEESAQKTSRKIHDQK 753

Query: 205 W 205
           +
Sbjct: 754 F 756


>TC81709 similar to PIR|T05867|T05867 hypothetical protein T29A15.110 -
            Arabidopsis thaliana, partial (72%)
          Length = 1383

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
 Frame = +3

Query: 186  KAKREEERIEKLKK--------IRGERWLPSMAKEMQAKIKIK 220
            K K EEERIE LK+        I G+ +L    KE ++++ +K
Sbjct: 1056 KTKDEEERIEMLKRQVGELKEAIEGKEYLLQSYKEQKSELSLK 1184


>TC81530 similar to GP|10177440|dbj|BAB10736.
           gb|AAC55944.1~gene_id:K9H21.2~similar to unknown protein
           {Arabidopsis thaliana}, partial (24%)
          Length = 1135

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +1

Query: 123 DEPQPPMKRPKLVPGEDIDEKSKKFRRRIRSIAVDGNDLIAAANDAYKKSLARLEAKDAA 182
           DE + P K    +  E+++ + K+ + R+++ A        AA +A +K+ A     +AA
Sbjct: 412 DEKRDPEKLR--IEREELERRQKEEKARLQAEA-------KAAEEARRKAEA-----EAA 549

Query: 183 AKAKAKREEER 193
           A+AK KRE ER
Sbjct: 550 AEAKRKRELER 582


>BG587062 similar to GP|19881001|gb chemiosmotic efflux system B protein A
           {Legionella pneumophila}, partial (1%)
          Length = 780

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 11/169 (6%)
 Frame = +3

Query: 47  TNNNDTKKKHNDNQNPKSPKIKHYQLKALKLLDDILENTIEIVKEPIPVLDEDPNVDDCG 106
           +NN  TKKK   N+N K+        +  K   ++ +N     +EP P L+   N     
Sbjct: 264 SNNIATKKKRKKNRN-KNKNKSMINAEEPKPALELGKN-----EEPKPALELGKN----- 410

Query: 107 IRLFRHSKPGIVFDHADEPQPPMKRPKLVPGEDIDEKSKKFRRRIRSIAVDGNDL----I 162
                  KP +  +  +EP+P ++  K    E I       R+R R    +G +     I
Sbjct: 411 ----EEPKPVLELEKNEEPKPALELEKNKEVESIAVAKTMTRKRKRKSVQNGAESNEHNI 578

Query: 163 AAANDAYKKSLARLEAKDAAAKAKAKRE-------EERIEKLKKIRGER 204
             A  A + S+   E            +       EER  + KK R ER
Sbjct: 579 EQAETAVQMSILDTEVPPIDKAIAVNNQHVSLDELEERYFERKKTRKER 725


>TC88759 similar to GP|16588826|gb|AAL26909.1 dehydration-responsive protein
           RD22 {Prunus persica}, partial (14%)
          Length = 1111

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 30  VAGTSSYVTSFMNGFSATNNNDTKKKHN-DNQNPKSPKIK-HYQLKALKL 77
           +AGT S +       +ATN + T+ KH+  N N   P +   + LK LK+
Sbjct: 83  LAGTESKLLDIAVNKTATNEHQTEHKHHAHNHNHMDPSVMVFFTLKDLKV 232


>TC76342 similar to PIR|A86444|A86444 probable RNA helicase [imported] -
           Arabidopsis thaliana, partial (80%)
          Length = 1651

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 39/146 (26%), Positives = 60/146 (40%), Gaps = 17/146 (11%)
 Frame = +3

Query: 46  ATNNN----DTKKKHNDNQNPKS-PKIKHYQLKALKLLDDILENTIEIVKEPIPVLDE-- 98
           A NNN     +KKK   N++ ++ PK KH         +  L+N  E  K+         
Sbjct: 105 ALNNNTELKSSKKKTKKNKHEETTPKRKHQD-------ETNLQNDTESEKKSKKKKKHNK 263

Query: 99  -DPNVDDCGIRLFRHSKPGIVF--DHADEPQPPMKR--PKLVPGEDID-----EKSKKFR 148
            + N D  G+ +    +P +V   +  DE   P+KR     +P   ++     EK    +
Sbjct: 264 SEENNDAGGVSVSASDEPIVVTGKNAGDEKYTPVKRFEDSGLPENVLECCKGFEKPSPIQ 443

Query: 149 RRIRSIAVDGNDLIAAANDAYKKSLA 174
            R     +DG DLI  A     K+LA
Sbjct: 444 SRAWPFLLDGRDLIGIAATGSGKTLA 521


>BQ138404 weakly similar to PIR|T14601|T146 plasma membrane major intrinsic
           protein 3 - beet, partial (12%)
          Length = 661

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 3   EEELNNGYCSSSGDEDGDAAWKAAIDSVAG 32
           E+ L NGY  S G  D   AW+   D+  G
Sbjct: 649 EKTLCNGYARSEGSRDVQIAWEHGRDNSGG 560


>BQ144999 homologue to GP|14318171|gb| fructose-1 6-bisphosphatase {Pisum
           sativum}, partial (22%)
          Length = 625

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 60  QNPKSPKIKHYQLKALKLLDDILENTIEIVKEP 92
           Q PKS KI  +     KL DD L+  I+ +KEP
Sbjct: 506 QIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEP 604


>TC79012 similar to GP|13877821|gb|AAK43988.1 unknown protein {Arabidopsis
           thaliana}, partial (89%)
          Length = 1493

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 20/75 (26%), Positives = 39/75 (51%), Gaps = 4/75 (5%)
 Frame = +3

Query: 23  WKAAIDS---VAGTSSYVTSFMNGFSATNNNDTKKKHNDNQNPKSPKIKHYQLKA-LKLL 78
           WK  ++S   + GT  Y++  +      +++    KH+D+++      +H + K  L+  
Sbjct: 474 WKLRLNSYGQIIGTE-YISDLVEKGHEHDHDHGTHKHDDSKDHH----EHSEQKVHLQTF 638

Query: 79  DDILENTIEIVKEPI 93
           D+  ENTI+ VKE +
Sbjct: 639 DEATENTIKKVKEAL 683


>TC86126 homologue to GP|14318171|gb|AAK59929.1 fructose-1 6-bisphosphatase
           {Pisum sativum}, partial (88%)
          Length = 1205

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 60  QNPKSPKIKHYQLKALKLLDDILENTIEIVKEP 92
           Q PKS KI  +     KL DD L+  I+ +KEP
Sbjct: 952 QIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEP 1050


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.311    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,055,815
Number of Sequences: 36976
Number of extensions: 75649
Number of successful extensions: 445
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of query: 221
length of database: 9,014,727
effective HSP length: 92
effective length of query: 129
effective length of database: 5,612,935
effective search space: 724068615
effective search space used: 724068615
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)


Medicago: description of AC147000.5