TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.15 - phase: 0 /pseudo
         (485 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...    44  1e-04
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...    39  0.004
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...    37  0.017
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...    35  0.084
BG644690 weakly similar to GP|18542179|gb putative pol protein {...    32  0.71
BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)         31  1.2
BF631997 weakly similar to GP|18542925|gb Putative pol polyprote...    29  3.5

>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
 Frame = +1

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNAN--NSTLFWDETV** 58
           FN+ C + GI RHK I   P++N +   RM R ++ER  C++SNA   N    W E    
Sbjct: 334 FNEFCTNHGIARHKTIPRNPQQNGVAE-RMIRTLLERARCMLSNAGL*N*RDLWVEAA-- 504

Query: 59  FFLIS*IDSLTLNLV*RH*KRCGWSCSKP*KYESFWL-------------CPLYAHIKRT 105
                   S   +LV     R   S       E  W              CP YA +   
Sbjct: 505 --------STACHLV----NRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDG 648

Query: 106 ILNQGLKLYVF-EVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSKETS 157
            L       +F   +   K  ++WC +     +++++DV F E  +  S + S
Sbjct: 649 KLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALLSSGKQS 807


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
           thaliana}, partial (14%)
          Length = 778

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 263 FVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NS 320
           F  A KS +W ASM  E+ +  +N TW L +     K +    +F  KL E        +
Sbjct: 51  FEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIEKYKA 230

Query: 321 RFKARGFT*REGID 334
           R  A+G++ + G+D
Sbjct: 231 RLVAKGYSQQYGVD 272


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
           partial (9%)
          Length = 675

 Score = 37.0 bits (84), Expect = 0.017
 Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 4/72 (5%)
 Frame = +1

Query: 272 WIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKE----GVNYMD*NSRFKARGF 327
           W+ +MK E  +L  N TW LV  P   K + C  ++++KE     VN     +R  A+GF
Sbjct: 97  WLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKF--KARLVAKGF 270

Query: 328 T*REGID*CENY 339
           +   G D  E +
Sbjct: 271 SQTLGCDYTETF 306


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
           Arabidopsis thaliana, partial (17%)
          Length = 618

 Score = 34.7 bits (78), Expect = 0.084
 Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 2/79 (2%)
 Frame = -1

Query: 263 FVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NS 320
           +  A + +EW  S+  E  ++ KN TW     PK  K +S   +F  K K   +     +
Sbjct: 549 YEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIERKKT 370

Query: 321 RFKARGFT*REGID*CENY 339
           R  ARGFT   G D  E +
Sbjct: 369 RLVARGFTLTYGEDYIETF 313


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 31.6 bits (70), Expect = 0.71
 Identities = 18/51 (35%), Positives = 25/51 (48%)
 Frame = -3

Query: 246 VVVSGEIDGDEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPK 296
           V  S  I   EP N      A +  +WI SM+EEL    ++  W LV +P+
Sbjct: 618 VSFSAFISSIEPKN---VKEALRDADWINSMQEELHQFERSKVWYLVPRPE 475


>BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)
          Length = 488

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 257 PVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSC 303
           P+       A +  +W + M++E  +L  N TW LV++      + C
Sbjct: 262 PIEPSNITQALRDHDWRSIMQDEFDALQNNNTWDLVSRSFAQNLVGC 402


>BF631997 weakly similar to GP|18542925|gb Putative pol polyprotein {Oryza
           sativa}, partial (6%)
          Length = 650

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 1   FNQICKDSGIVRHKQIRGTPREN 23
           FN++CK+  I R   +R TP++N
Sbjct: 514 FNELCKEEHITRQYTVRNTPQKN 446


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.361    0.161    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,198,740
Number of Sequences: 36976
Number of extensions: 181294
Number of successful extensions: 1896
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 1166
length of query: 485
length of database: 9,014,727
effective HSP length: 100
effective length of query: 385
effective length of database: 5,317,127
effective search space: 2047093895
effective search space used: 2047093895
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 60 (27.7 bits)