BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.12 + phase: 0
(136 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85197 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 263 1e-71
TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 263 1e-71
TC76927 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 263 1e-71
TC85156 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 263 1e-71
TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop... 262 3e-71
TC87557 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC86632 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC81197 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC77273 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Ar... 254 7e-69
TC89120 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC78424 PIR|A26014|A26014 histone H3 - wheat, complete 254 7e-69
TC88838 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 241 5e-65
TC81730 PIR|A26014|A26014 histone H3 - wheat, partial (94%) 241 8e-65
TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 240 1e-64
AJ501216 homologue to GP|1435157|emb histone H3 variant H3.3 {Ly... 238 7e-64
BI263077 GP|21702714|g histone H3 {Hypocrea jecorina}, complete 236 2e-63
TC92301 PIR|A26014|A26014 histone H3 - wheat, complete 129 2e-62
AW980465 PIR|A26014|A26 histone H3 - wheat, partial (98%) 222 3e-59
TC83567 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti... 199 4e-52
>TC85197 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 1332
Score = 263 bits (673), Expect = 1e-71
Identities = 135/136 (99%), Positives = 135/136 (99%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 566 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 745
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 746 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 925
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 926 MPKDIQLARRIRGERA 973
>TC76926 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 695
Score = 263 bits (673), Expect = 1e-71
Identities = 135/136 (99%), Positives = 135/136 (99%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 68 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 247
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 248 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 427
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 428 MPKDIQLARRIRGERA 475
>TC76927 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 741
Score = 263 bits (673), Expect = 1e-71
Identities = 135/136 (99%), Positives = 135/136 (99%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 104 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 283
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 284 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 463
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 464 MPKDIQLARRIRGERA 511
>TC85156 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 754
Score = 263 bits (673), Expect = 1e-71
Identities = 135/136 (99%), Positives = 135/136 (99%)
Frame = +1
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 61 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 240
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 241 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 420
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 421 MPKDIQLARRIRGERA 468
>TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
esculentum}, complete
Length = 1440
Score = 262 bits (670), Expect = 3e-71
Identities = 134/136 (98%), Positives = 135/136 (98%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST+
Sbjct: 53 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTD 232
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 233 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 412
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 413 MPKDIQLARRIRGERA 460
>TC87557 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 621
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC86632 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 640
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +3
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 84 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 263
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 264 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 443
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 444 MPKDIQLARRIRGERA 491
>TC81197 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 646
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +1
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 67 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 246
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 247 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 426
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 427 MPKDIQLARRIRGERA 474
>TC77273 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 697
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Arabidopsis
thaliana}, partial (80%)
Length = 2013
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +3
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 75 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 254
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 255 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 434
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 435 MPKDIQLARRIRGERA 482
>TC89120 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 652
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 50 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 229
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 230 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 409
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 410 MPKDIQLARRIRGERA 457
>TC78424 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 652
Score = 254 bits (649), Expect = 7e-69
Identities = 131/136 (96%), Positives = 132/136 (96%)
Frame = +1
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 240
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 241 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 420
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 421 MPKDIQLARRIRGERA 468
>TC88838 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, complete
Length = 730
Score = 241 bits (616), Expect = 5e-65
Identities = 123/136 (90%), Positives = 129/136 (94%)
Frame = +3
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQK+T+
Sbjct: 108 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKTTD 287
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI
Sbjct: 288 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNLAAIHAKRVTI 467
Query: 121 MPKDIQLARRIRGERA 136
PKDIQLARR+RGER+
Sbjct: 468 QPKDIQLARRLRGERS 515
>TC81730 PIR|A26014|A26014 histone H3 - wheat, partial (94%)
Length = 571
Score = 241 bits (614), Expect = 8e-65
Identities = 125/136 (91%), Positives = 130/136 (94%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
+ ++KQ+ RKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 38 LVQSKQS-RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 214
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 215 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 394
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 395 MPKDIQLARRIRGERA 442
>TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, partial (98%)
Length = 654
Score = 240 bits (613), Expect = 1e-64
Identities = 123/136 (90%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
+ARTKQTARKSTGGKAPRK LATKAARKSAP GGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 38 VARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRPGTVALREIRRYQKSTE 217
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI
Sbjct: 218 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNLAAIHAKRVTI 397
Query: 121 MPKDIQLARRIRGERA 136
PKDIQLARR+RGER+
Sbjct: 398 QPKDIQLARRLRGERS 445
>AJ501216 homologue to GP|1435157|emb histone H3 variant H3.3 {Lycopersicon
esculentum}, partial (96%)
Length = 450
Score = 238 bits (606), Expect = 7e-64
Identities = 120/131 (91%), Positives = 125/131 (94%)
Frame = +1
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTAR+ST GKAPRK LATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 58 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 237
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 238 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 417
Query: 121 MPKDIQLARRI 131
M KDIQLARRI
Sbjct: 418 MVKDIQLARRI 450
>BI263077 GP|21702714|g histone H3 {Hypocrea jecorina}, complete
Length = 682
Score = 236 bits (602), Expect = 2e-63
Identities = 119/135 (88%), Positives = 128/135 (94%)
Frame = +2
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTE
Sbjct: 92 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTE 271
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI
Sbjct: 272 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTI 451
Query: 121 MPKDIQLARRIRGER 135
KDIQLARR+RGER
Sbjct: 452 QSKDIQLARRLRGER 496
>TC92301 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 557
Score = 129 bits (323), Expect(2) = 2e-62
Identities = 67/73 (91%), Positives = 68/73 (92%)
Frame = +3
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123
+K FQRLVREIAQDFKT LRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct: 201 KKTSFQRLVREIAQDFKTYLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 380
Query: 124 DIQLARRIRGERA 136
DIQLARRIRGERA
Sbjct: 381 DIQLARRIRGERA 419
Score = 125 bits (315), Expect(2) = 2e-62
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 192
Query: 61 LLIRKL 66
LLIRKL
Sbjct: 193LLIRKL 210
>AW980465 PIR|A26014|A26 histone H3 - wheat, partial (98%)
Length = 607
Score = 222 bits (566), Expect = 3e-59
Identities = 119/133 (89%), Positives = 120/133 (89%)
Frame = +2
Query: 4 TKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLI 63
TK RKS G K LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLI
Sbjct: 53 TKIHRRKSRG-----KQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 217
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123
RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct: 218 RKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 397
Query: 124 DIQLARRIRGERA 136
DIQLARRIRGERA
Sbjct: 398 DIQLARRIRGERA 436
Score = 33.1 bits (74), Expect = 0.035
Identities = 18/25 (72%), Positives = 18/25 (72%), Gaps = 5/25 (20%)
Frame = +3
Query: 1 MARTKQTARKSTGGKA-----PRKP 20
MARTK TARKSTGGKA P KP
Sbjct: 30 MARTKHTARKSTGGKAGGNNWPPKP 104
>TC83567 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
alpina}, partial (81%)
Length = 454
Score = 199 bits (505), Expect = 4e-52
Identities = 102/110 (92%), Positives = 104/110 (93%)
Frame = +3
Query: 1 MARTKQTARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRK LATKAARKSAP GGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 120 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRPGTVALREIRRYQKSTE 299
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL
Sbjct: 300 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVALFEDTNL 449
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,750,003
Number of Sequences: 36976
Number of extensions: 26128
Number of successful extensions: 165
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of query: 136
length of database: 9,014,727
effective HSP length: 86
effective length of query: 50
effective length of database: 5,834,791
effective search space: 291739550
effective search space used: 291739550
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC147000.12