TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146972.10 - phase: 0 
         (106 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79554 homologue to SP|Q39236|T2AG_ARATH Transcription initiati...   213  9e-57
AJ500870 similar to SP|Q39236|T2AG_ Transcription initiation fac...   113  1e-26
CA922316 similar to PIR|F96807|F968 unknown protein T32E8.10 [im...    25  3.6
BI308227 similar to GP|17978937|gb AT4g32850/T16I18_60 {Arabidop...    25  4.7
TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein ...    25  4.7
BI271828 similar to GP|10177162|dbj contains similarity to myb-r...    25  6.1
AW256377                                                               24  8.0

>TC79554 homologue to SP|Q39236|T2AG_ARATH Transcription initiation factor
           IIA gamma chain (TFIIA-gamma). [Mouse-ear cress],
           complete
          Length = 708

 Score =  213 bits (542), Expect = 9e-57
 Identities = 106/106 (100%), Positives = 106/106 (100%)
 Frame = +1

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 85  MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 264

Query: 61  GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ
Sbjct: 265 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 402


>AJ500870 similar to SP|Q39236|T2AG_ Transcription initiation factor IIA
           gamma chain (TFIIA-gamma). [Mouse-ear cress], partial
           (57%)
          Length = 357

 Score =  113 bits (283), Expect = 1e-26
 Identities = 51/86 (59%), Positives = 74/86 (85%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK-GH 62
           +ELYRRS+IG+ LT++LDE++Q   ++P++A++VLVQFDKS+TEAL+T+V++K + K GH
Sbjct: 88  YELYRRSSIGIALTDSLDELIQKEKITPQLAMKVLVQFDKSITEALDTKVRNKATFKAGH 267

Query: 63  LHTYRFCDNVWTFILQDALFKNEDNQ 88
           LHTYRFCD VWTFI+++  FK E +Q
Sbjct: 268 LHTYRFCDEVWTFIIKNPNFKLESDQ 345


>CA922316 similar to PIR|F96807|F968 unknown protein T32E8.10 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 746

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 66  YRFCDNVWTFILQDALFK 83
           +RFC ++WT+I QD + K
Sbjct: 537 FRFCCSLWTWIPQDTVGK 484


>BI308227 similar to GP|17978937|gb AT4g32850/T16I18_60 {Arabidopsis
           thaliana}, partial (27%)
          Length = 761

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 2   ATFELYRRSTIG---MCLTETLDEMVQNGTLSPEI 33
           AT + ++  T+G   +C TET D    +GT+  EI
Sbjct: 686 ATLQPFKLRTVGSSILCRTETSDISNSSGTIKQEI 582


>TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein - fission
           yeast (Schizosaccharomyces pombe), partial (5%)
          Length = 1571

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 20/67 (29%), Positives = 26/67 (37%)
 Frame = -1

Query: 34  AIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGR 93
           A +VL +FDK  +  +ET                   N  T  L D LFKN+   + V  
Sbjct: 710 AYEVLQKFDKMASGGIETS-----------------SNRETLTLLDRLFKNKPPSDPVSD 582

Query: 94  VKIVACD 100
               ACD
Sbjct: 581 EVTRACD 561


>BI271828 similar to GP|10177162|dbj contains similarity to myb-related
           transcription factor~gene_id:K21P3.23 {Arabidopsis
           thaliana}, partial (5%)
          Length = 607

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 29  LSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNV 72
           + PE+ I      D  +TE +   V+ K +      TY  CD++
Sbjct: 271 IEPEVQIPRTPSLDCEVTEKIIDDVEVKTTHDEKETTYELCDDI 402


>AW256377 
          Length = 607

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 11/38 (28%), Positives = 23/38 (59%)
 Frame = +1

Query: 29  LSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTY 66
           L PE+ I +L +FD    + ++T+++S  ++   L +Y
Sbjct: 460 LPPELKILILYRFDLI*IDFIKTKIQSSDNMPSLLSSY 573


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,760,271
Number of Sequences: 36976
Number of extensions: 27346
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of query: 106
length of database: 9,014,727
effective HSP length: 82
effective length of query: 24
effective length of database: 5,982,695
effective search space: 143584680
effective search space used: 143584680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)