TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146971.7 - phase: 0 /pseudo
         (2360 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...   350  3e-96
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...   302  1e-81
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia...   183  8e-46
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra...   163  6e-40
AL366605                                                              136  8e-32
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ...   115  2e-25
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...   109  1e-23
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p...    65  5e-19
BE124481                                                               94  6e-19
BE942785                                                               92  2e-18
AL375831                                                               75  5e-18
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...    79  2e-14
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ...    68  5e-11
AL375832                                                               59  2e-08
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...    54  9e-07
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t...    50  1e-05
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...    48  5e-05
TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Ara...    47  7e-05
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ...    46  1e-04
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa...    45  3e-04

>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
            chromosome II BAC F26H6; putative retroelement pol
            polyprotein, partial (1%)
          Length = 636

 Score =  350 bits (899), Expect = 3e-96
 Identities = 164/167 (98%), Positives = 165/167 (98%)
 Frame = -2

Query: 1672 KTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRS 1731
            KTCCALAWAAKRLRHYMINHTTWL+SKMDPIKYIFEKPAL GRIARWQMLLSEYDIEYRS
Sbjct: 635  KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456

Query: 1732 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 1791
            QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF
Sbjct: 455  QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276

Query: 1792 DGAVNVYGNGIGAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGI 1838
            DGAVNVYGNGIGAVLLTPKG HIPFTARLRFDCTNNIAEYEACIMGI
Sbjct: 275  DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135



 Score = 53.5 bits (127), Expect = 9e-07
 Identities = 30/44 (68%), Positives = 33/44 (74%)
 Frame = +2

Query: 1625 *SYT*RC*ENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYS 1668
            *S T*+C* N   CVLGQQDETGRKEHAIYYLS+K +    R S
Sbjct: 2    *SCT*QC*-NPWVCVLGQQDETGRKEHAIYYLSRKLSSTVWRIS 130


>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (2%)
          Length = 592

 Score =  302 bits (773), Expect = 1e-81
 Identities = 143/196 (72%), Positives = 168/196 (84%), Gaps = 8/196 (4%)
 Frame = -2

Query: 1768 KMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGTHIPFTARLRFDCTNN 1827
            K KDC+EPL GEGPDP+S WGL+FDGAVN YG GIGAV+++P+G +IPFTAR+ F+CTNN
Sbjct: 591  KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412

Query: 1828 IAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFF 1887
            +AEYEACI GIEEAID+RIK+++IYGDSALVINQIKG+WET HA LIPYRDYARRLLT+F
Sbjct: 411  MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232

Query: 1888 NKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPAYVFA--------AE 1939
             KVELHHIPRDENQMADALATLSSM +VNH NDVP+I V+ L+RP++VFA         E
Sbjct: 231  TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52

Query: 1940 VVFDDKPWFHDIKVFL 1955
             V D KPW++DIK FL
Sbjct: 51   NVVDYKPWYYDIKQFL 4


>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
            II BAC F26H6; putative retroelement pol polyprotein,
            partial (1%)
          Length = 488

 Score =  183 bits (464), Expect = 8e-46
 Identities = 97/190 (51%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
 Frame = +1

Query: 936  VNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSF 995
            + FQVMDI ASYSCLLGRPWIH+AGAVTSTLHQKLKFVKNG                   
Sbjct: 1    ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123

Query: 996  SFIGADDVEGTPFQGFTIEDKNTKRNEASISSLKDAQKVIQAGGSTSWGKLIELPENKHR 1055
                    EGT FQG ++E    K+  A+++SLKDAQK +Q G +  WGKLI+L ENK +
Sbjct: 124  ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285

Query: 1056 EGLGFFPSTGLSTAKKGTFHSSGFIHAIIEDDPESVPRG-FITPGVSSHNWVAVDVPFVA 1114
            EGL F P++G+ST   GTFHS+GF++ + E+    VPR  F+ PG  + +W AVDVP + 
Sbjct: 286  EGLRFSPTSGVST---GTFHSAGFVNTLAEEVARFVPRPLFVIPGGIAKDWDAVDVPSIM 456

Query: 1115 HLSK*CICLV 1124
            H+S *C+ L+
Sbjct: 457  HVSX*CVLLL 486


>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
           partial (9%)
          Length = 624

 Score =  163 bits (413), Expect = 6e-40
 Identities = 87/182 (47%), Positives = 114/182 (61%)
 Frame = -2

Query: 461 PQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWY 520
           P +N     +QQR  Q   P  P+  IP+ YAE LP LL +     R   P P+ LP  +
Sbjct: 539 PPRNNHPPVHQQRQ*QQARPTFPL--IPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRF 366

Query: 521 RLDQTCDFHEGGRGHNIETCYAFKSTVQRLINDGKITFTDSAPNVQTNPLPNHGAATVNM 580
           R D  CDFH+G  GH++E CYA K  V++LIN GK+TF ++ P+V  NPLPNH  A VNM
Sbjct: 365 RSDLKCDFHQGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNH--AAVNM 192

Query: 581 IEDCQKTRPILNVQHIRTPLVPLHAKLCKVDLFEHDHDLCEICLMNSGGCQKVRNDIQGL 640
           IE  ++  P L+V+++ TPLVPLH KLC+  LF+HDH  C+    N  GC  V+NDIQ L
Sbjct: 191 IEVYEEA-PGLDVRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSL 15

Query: 641 LN 642
           +N
Sbjct: 14  MN 9


>AL366605 
          Length = 422

 Score =  136 bits (343), Expect = 8e-32
 Identities = 64/140 (45%), Positives = 93/140 (65%)
 Frame = -3

Query: 161 DMKALRDKGKFGKTAYDLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQ 220
           ++KA R      KT  DLCLV  V VP KFKIPDF++Y G +CP+ H+  YVR+M  Y  
Sbjct: 417 EIKANRGNADSFKTQ-DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 241

Query: 221 DDQILIYYFQESLTGPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMT 280
           +D ++I+ FQ+SL   A++WYT+L K  + TF +L  AF   Y +N  + P+R  L++++
Sbjct: 240 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLS 61

Query: 281 QGDKETFKEYAQRWRDTAAQ 300
           Q  +E+F+EYAQRWR  AA+
Sbjct: 60  QKKEESFREYAQRWRGAAAR 1


>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
           (ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
           partial (0%)
          Length = 665

 Score =  115 bits (289), Expect = 2e-25
 Identities = 74/221 (33%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
 Frame = +3

Query: 363 TKKTGNHFPR----KKEQEVGMVTHGMPQQTYPAYQHIAAITPTSHPFQQTNNHSQIPQY 418
           + K G+H       +K  ++    H +  +       +  +T        TN+   + Q 
Sbjct: 69  SSKFGSHMQTLVQTQKMDQLEQEVHELRGEVTTLRAEVEKLTSLVSSLMATNDPPLVQQR 248

Query: 419 PQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPR 478
           PQ P  P  PQ P+               QQ P Q  P  Q PQ+   Q   Q+  Q   
Sbjct: 249 PQSPYQPMCPQKPR---------------QQAPRQSIPQNQVPQKFIPQNQVQKASQ--- 374

Query: 479 PPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHNIE 538
                 +PIPV YA+LLP LLKKNL+QT   P +P  LP WYR D  C FH+G  GH+ E
Sbjct: 375 -----CDPIPVKYADLLPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHDTE 539

Query: 539 TCYAFKSTVQRLINDGKITFTDSAPNV---QTNPLPNHGAA 576
            CY  K  VQ+LI +   +F D    V   Q +  P+ GAA
Sbjct: 540 QCYPLKEEVQKLIENNVWSFDDQDIKVLLQQQHLAPHSGAA 662


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
            (10%)
          Length = 624

 Score =  109 bits (273), Expect = 1e-23
 Identities = 60/188 (31%), Positives = 95/188 (49%)
 Frame = +2

Query: 1986 LYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYK 2045
            LYK+  D + +RCV + E   ++   H  ++  H        KI +AG++W TM  D + 
Sbjct: 41   LYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAHS 220

Query: 2046 HTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 2105
               KC  CQ   +         N +     F +WGID +G      +N  ++ILVA+DY 
Sbjct: 221  FISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KYILVAVDYV 394

Query: 2106 TKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHH 2165
            +KWVEA +       VVVK  K+ I  R+G+P  +I+D G++  NK+ ++L     + H 
Sbjct: 395  SKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKNGVRHK 574

Query: 2166 NSSPYRPQ 2173
             ++ Y PQ
Sbjct: 575  VATAYHPQ 598


>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
            [imported] - Arabidopsis thaliana, partial (7%)
          Length = 686

 Score = 65.1 bits (157), Expect(2) = 5e-19
 Identities = 41/122 (33%), Positives = 69/122 (55%), Gaps = 4/122 (3%)
 Frame = -3

Query: 2207 LHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSL---RVLMEVDLSEAEWVQNRYDQL 2263
            L  +RT+ R +  +TPFS+ + +EA+ P EV + SL   R+   ++L+        ++ L
Sbjct: 462  LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295

Query: 2264 NLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNY 2322
              IEE+R  AL   Q YQ +++  ++K V+ +  K GD+VL K+F    + + GK   N+
Sbjct: 294  ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115

Query: 2323 EG 2324
            EG
Sbjct: 114  EG 109



 Score = 49.7 bits (117), Expect(2) = 5e-19
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = -2

Query: 2134 YGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI 2185
            +G+P  I+TDNG++  +   +E C+ ++I  + +SP  PQ NG  EA+NK I
Sbjct: 685  HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530


>BE124481 
          Length = 538

 Score = 94.0 bits (232), Expect = 6e-19
 Identities = 58/162 (35%), Positives = 73/162 (44%)
 Frame = +3

Query: 375 EQEVGMVTHGMPQQTYPAYQHIAAITPTSHPFQQTNNHSQIPQYPQIPQYPQIPQYPQFP 434
           EQEV    H +  +       +  +T        TN+   + Q PQ P  P  PQ P+  
Sbjct: 132 EQEV----HELRGEVTTLRAEVEKLTSLVSSLMATNDPPLVQQRPQSPYQPMCPQKPR-- 293

Query: 435 QNPSPQNTQQQNFQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAEL 494
                        QQ P Q  P  Q PQ+   Q   Q+  Q         +PIPV YA+L
Sbjct: 294 -------------QQAPRQSIPQNQVPQKFIPQNQVQKASQ--------CDPIPVKYADL 410

Query: 495 LPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHN 536
           LP LLKKNL+QT   P +P  LP WYR D  C FH+G  GH+
Sbjct: 411 LPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHD 536


>BE942785 
          Length = 460

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = -2

Query: 975  NGKLVTVNGEEALLVSHLSSFSFIGADDVEGTPFQGFTIEDKNTKRNEASISSLKDAQKV 1034
            +G LVT++GEEA L+S LSSFS I A   EGT FQG T+E    KR+  +++SLKDAQ+ 
Sbjct: 378  SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199

Query: 1035 IQAGGSTSWGKLIELPENKHRE 1056
            +Q   +  WG+LI+L ENKH++
Sbjct: 198  VQESQAAGWGRLIQLRENKHKD 133


>AL375831 
          Length = 467

 Score = 74.7 bits (182), Expect(2) = 5e-18
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +2

Query: 118 TMTYSAPVIHTIPQTEEPIFHSGNVEAYEEVSDLQEKY-DELRRDMKALRDKGKFGKTAY 176
           T   + P++HT+PQ         ++   + + ++ E+   ELR +++A R      KT  
Sbjct: 56  TAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKELRHEIQANRGNADSVKTQ- 232

Query: 177 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAY 218
           DLCLV  V VP KFKIPDF++Y G +CP+ H+  YVR+M  Y
Sbjct: 233 DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNY 358



 Score = 36.6 bits (83), Expect(2) = 5e-18
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 221 DDQILIYYFQESLTGPASKWYTNLDKTRVQTF 252
           +D ++I+ FQ+SL   A++WYT+L K  + TF
Sbjct: 366 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTF 461


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
            blast fungus gypsy retroelement (fragment), partial (14%)
          Length = 1708

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 13/325 (4%)
 Frame = +2

Query: 2007 LIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTT 2066
            L+ E H+ +   HP G     +I+   ++W        +  R C  C      IH+    
Sbjct: 179  LVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQA 343

Query: 2067 LNLLSSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQV 2121
                  P P      S   +D I  + P    G +++ V +D  +K V       +  + 
Sbjct: 344  KRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAEA 523

Query: 2122 VVKFIKNHIICRY---GIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAV 2178
              +     + C Y   G+P  I++D G+N   +  +E C    +    S+ Y PQ +G  
Sbjct: 524  CAQ---RFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGT 694

Query: 2179 EAANKNIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEV 2237
            E  N+ I+ +++  V   +D W ++LP      R    +SIGATPF + +G   V P+  
Sbjct: 695  ERWNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPT 871

Query: 2238 EIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPRE- 2296
               +  V+ E + +    V+   D    I+ + +AA       Q+R + + +K+  P + 
Sbjct: 872  VEDTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAA-------QQRSEASANKRRCPADR 1030

Query: 2297 FKEGDLVLKKIFSF---QPDSRGKW 2318
            ++ GD V   + ++   +P  +  W
Sbjct: 1031 YQVGDKVWLNVSNYKSPRPSKKLDW 1105


>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (13%)
          Length = 415

 Score = 67.8 bits (164), Expect = 5e-11
 Identities = 41/109 (37%), Positives = 56/109 (50%)
 Frame = +3

Query: 1803 GAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQI 1862
            G  L +P    +  + RL F  +NN   YEA I G+  A  L+I+NI  Y DS LV +Q 
Sbjct: 3    GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182

Query: 1863 KGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSS 1911
             G++E     +  Y    ++L    +   L  IPR EN  ADALA L+S
Sbjct: 183  SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329


>AL375832 
          Length = 535

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 45/123 (36%), Positives = 64/123 (51%), Gaps = 7/123 (5%)
 Frame = +3

Query: 1079 FIHAIIEDDPESVPR-GFITPGVSSHNWVAVDVPFVAHLSK*CICLVYAFLFKKKKNNIL 1137
            F++AI E+   S  R  F+TPG  + +W A+D+P + H+S+*C+ L+  F+F K  N + 
Sbjct: 3    FVNAISEEATGSGLRPAFVTPGGIASDWDAIDIPSIMHVSE*CVLLL*RFVF-KNNNPLA 179

Query: 1138 SPAPSESELI*GFLFQEIIINKIKTSFFSRCFVSFFLCFSEKW*-YKKPN-----MNFQK 1191
             P       +   LF+   +      FF  CF  F   F EKW*  KKP      +NF K
Sbjct: 180  LPKARVIFSVRACLFRHCRLMNKNCRFFHDCFF-FSAFFLEKW*CQKKPKRLYFLINF-K 353

Query: 1192 NLH 1194
            NLH
Sbjct: 354  NLH 362


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
            sativa}, partial (2%)
          Length = 384

 Score = 53.5 bits (127), Expect = 9e-07
 Identities = 39/108 (36%), Positives = 59/108 (54%)
 Frame = -2

Query: 1250 KKRRPFSLMGTN*K*LTWAPKKTRKKSRLGHRSEQVLKSK**SSSKNMLMCLPGPTKICR 1309
            KK +PFSL        T  P++T ++SR      + LK +  SSS+N  + L    KIC+
Sbjct: 383  KKGKPFSLTRKRLSLST*VPRRTSERSRSVLL*RKGLKGRSSSSSENTWIFLHARMKICQ 204

Query: 1310 V*TLILWYITYL*NLSVRRSNKS*EEHVLTWLSKSKKRYRNRSTLVSS 1357
            V* L LW I    +L+V  S ++*E  +  WLS+ + R+++R   V S
Sbjct: 203  V*ILKLWNIGSQQSLNVLPSGRN*EGLIQIWLSRLRVRFKSRLMRVFS 60


>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
            partial (6%)
          Length = 469

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 33/109 (30%), Positives = 58/109 (52%), Gaps = 12/109 (11%)
 Frame = +1

Query: 2262 QLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVL-----KKIFSFQPDSRG 2316
            +LN +EE R+ A  + ++Y++R K+  D+++  REF+EG+LVL      K+F       G
Sbjct: 103  ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP------G 264

Query: 2317 KWAPNYEGPYVVKKAFSGGAMTLQ-------TMDGEELPRPVNTDTVKK 2358
            K   ++ GP+ VK     GA+ +        T++G+ L    + + V K
Sbjct: 265  KLRSHWSGPFQVKNVMPSGAVEVWSESTGPFTVNGQRLKHYTSGENVDK 411


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
            [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 31/115 (26%), Positives = 55/115 (46%)
 Frame = +2

Query: 1636 MGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWL 1695
            +GCVL Q       E  I Y S++  + E  Y   +    A+ +A K  R Y+      +
Sbjct: 80   LGCVLTQH------EKVIAYASRQLRKHEGNYPTHDLEMAAVVFALKIWRSYLYGAKVQI 241

Query: 1696 ISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLE 1750
             +    +KYIF +P L  R  RW   +++YD++       K +++AD L+ + ++
Sbjct: 242  HTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYPG-KANLVADALSRRRVD 403


>TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Arabidopsis
           thaliana, partial (44%)
          Length = 1559

 Score = 47.4 bits (111), Expect = 7e-05
 Identities = 22/98 (22%), Positives = 45/98 (45%)
 Frame = +3

Query: 417 QYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQFPYQQYPQQNFQQQPYQQRPQQ 476
           ++P++P+ P++P+ P+FP+ P P+  +          + P    P+      P   + +Q
Sbjct: 366 EFPKLPELPKVPELPKFPELPKPELPKVPELSMPEIPKIPELPKPELPKLNAPELPKLEQ 545

Query: 477 PRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPE 514
           P+ P +P + +P       P + K   +     P +PE
Sbjct: 546 PKVPELPKHELPKVSELPKPDIPKVPELPKPELPKVPE 659


>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
            melanogaster}, partial (20%)
          Length = 192

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 30/53 (55%)
 Frame = +1

Query: 1636 MGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1688
            +G  L Q+DE    EH I Y S+  T  E  Y+++E+ C A  WA +  RHY+
Sbjct: 16   IGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171


>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
            {Arabidopsis thaliana}, partial (21%)
          Length = 1071

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 32/100 (32%), Positives = 45/100 (45%)
 Frame = +2

Query: 1801 GIGAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVIN 1860
            G GA+LL   G+ +    +     T   AEY A ++G++ A     K +   GDS LVIN
Sbjct: 602  GAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFKYVTAKGDSELVIN 781

Query: 1861 QIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDEN 1900
            QI   W+     L      A  L   F+   + HI R+ N
Sbjct: 782  QILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,114,229
Number of Sequences: 36976
Number of extensions: 1139846
Number of successful extensions: 10969
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 6568
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 9031
length of query: 2360
length of database: 9,014,727
effective HSP length: 112
effective length of query: 2248
effective length of database: 4,873,415
effective search space: 10955436920
effective search space used: 10955436920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)