BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.5 - phase: 0
(191 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86934 similar to PIR|T04630|T04630 synaptobrevin homolog F10N7... 380 e-106
TC87032 similar to GP|9757817|dbj|BAB08335.1 synaptobrevin-like ... 251 2e-67
BQ255326 similar to GP|9757817|dbj synaptobrevin-like protein {A... 142 1e-45
BG585395 weakly similar to GP|19703107|gb synaptobrevin-like pro... 178 1e-45
TC78293 similar to SP|P47192|SYBR_ARATH Synaptobrevin-related pr... 147 2e-36
TC85889 similar to GP|22137292|gb|AAM91491.1 At1g04740/T1G11_1 {... 139 5e-34
TC85890 similar to SP|P47192|SYBR_ARATH Synaptobrevin-related pr... 138 1e-33
TC90078 similar to GP|23617131|dbj|BAC20811. putative synaptobre... 132 6e-32
BF003202 similar to PIR|F86180|F861 hypothetical protein [import... 74 5e-14
TC77301 similar to GP|4097579|gb|AAD00116.1| NTGP1 {Nicotiana ta... 64 4e-11
TC80147 similar to GP|19310827|gb|AAL85144.1 putative vesicle tr... 52 1e-07
BG585788 homologue to GP|7268326|emb SYBL1 like protein {Arabido... 51 3e-07
BG648270 similar to GP|22137292|gb At1g04740/T1G11_1 {Arabidopsi... 34 0.040
AL369327 similar to PIR|T48933|T48 WD repeat domain protein - Ar... 28 1.7
AJ501851 similar to PIR|F86180|F861 hypothetical protein [import... 28 2.2
BF647865 28 2.2
TC82291 similar to PIR|D96519|D96519 mysoin-like protein 11013-... 27 4.8
TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 27 4.8
BQ144513 similar to GP|995935|gb|AA MAZ {Homo sapiens}, partial ... 26 8.3
TC76664 weakly similar to PIR|T08541|T08541 hypothetical protein... 26 8.3
>TC86934 similar to PIR|T04630|T04630 synaptobrevin homolog F10N7.40 -
Arabidopsis thaliana, complete
Length = 1208
Score = 380 bits (975), Expect = e-106
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +2
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG
Sbjct: 113 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 292
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120
LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS
Sbjct: 293 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 472
Query: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR
Sbjct: 473 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 652
Query: 181 STVWWRNVKLT 191
STVWWRNVKLT
Sbjct: 653 STVWWRNVKLT 685
>TC87032 similar to GP|9757817|dbj|BAB08335.1 synaptobrevin-like protein
{Arabidopsis thaliana}, partial (98%)
Length = 1153
Score = 251 bits (640), Expect = 2e-67
Identities = 114/190 (60%), Positives = 156/190 (82%)
Frame = +1
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
M ILYALVARGTVVLAEF+ T N A+AR++LEK+P +D+ + +SQDRYIFH+ R+DG
Sbjct: 190 MAILYALVARGTVVLAEFSAVTGNTGAVARRLLEKLPTESDSRLCFSQDRYIFHILRSDG 369
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120
LT LCMA+D+ GRRIPF++LE+I RF+++Y R A AYAMNDEFSRVL+QQME+FSS
Sbjct: 370 LTFLCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSS 549
Query: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
+P+ D +NR++GE+ ++R +M++NI+K+L+RGDR+ELLVDK A MQ ++F FRKQ++R R
Sbjct: 550 NPSVDALNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSSFHFRKQSKRLR 729
Query: 181 STVWWRNVKL 190
+W +N KL
Sbjct: 730 RALWMKNFKL 759
>BQ255326 similar to GP|9757817|dbj synaptobrevin-like protein {Arabidopsis
thaliana}, partial (75%)
Length = 543
Score = 142 bits (358), Expect(2) = 1e-45
Identities = 71/119 (59%), Positives = 91/119 (75%)
Frame = +1
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
M ILYA VARGTVVLAEF+ T N A+AR++LEK+P +++ + QDRYI H+ R+DG
Sbjct: 16 MAILYASVARGTVVLAEFSAGTGNTGAVARRLLEKLPTESNSRLCCXQDRYISHILRSDG 195
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFS 119
LT L MA+D+ GRRIPF+ LE+I RF+++Y R A AYAMNDEFSRVL+QQME+ S
Sbjct: 196 LTCLRMANDTFGRRIPFSCLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFVS 372
Score = 57.8 bits (138), Expect(2) = 1e-45
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +2
Query: 118 FSSDPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQ 175
F DP+ D +NR++GE ++R +M +N++K+L+RGDR+ELL A +F KQ
Sbjct: 368 FLCDPSVDALNRVRGEDGEIRTIMADNVEKILERGDRIELLXXXTAXXXDRSFHCXKQ 541
>BG585395 weakly similar to GP|19703107|gb synaptobrevin-like protein
{Dictyostelium discoideum}, partial (44%)
Length = 668
Score = 178 bits (451), Expect = 1e-45
Identities = 87/180 (48%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Frame = +3
Query: 12 TVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTVLCMADDSV 71
+V+LAE+T ++ N + + ILEKIP NN + ++Y DRY+FH DGLT +CMADDS
Sbjct: 3 SVILAEYTNSSGNFTQVTQAILEKIPPNN-SKLTYVYDRYLFHYICEDGLTYMCMADDSF 179
Query: 72 GRRIPFAFLEEIHQRFVRSYGR-AVLTAEAYAMNDEFSRVLNQQMEYFSSDPNADRINRL 130
GRRIPF FL++I +RF+ +Y + TA Y MN EFS+V+ +QME+FS +ADRI ++
Sbjct: 180 GRRIPFLFLQDIKERFLVTYSKDRATTAVPYGMN-EFSKVIQKQMEHFSDVSHADRIKKV 356
Query: 131 KGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWWRNVKL 190
GE+ QV++VM NI++VL+RG+R+E+LVDK N+ F F+K++ + ++WW+N KL
Sbjct: 357 HGEIEQVKDVMTRNIEQVLERGERIEILVDKTDNLNQQAFAFKKRSTALKRSMWWKNTKL 536
>TC78293 similar to SP|P47192|SYBR_ARATH Synaptobrevin-related protein.
[Mouse-ear cress] {Arabidopsis thaliana}, complete
Length = 1066
Score = 147 bits (371), Expect = 2e-36
Identities = 77/190 (40%), Positives = 122/190 (63%), Gaps = 2/190 (1%)
Frame = +2
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++Y+ VARGTV+LAE++ T N IA Q L+K+P +N+ +Y+ D + F +G T
Sbjct: 149 LIYSFVARGTVILAEYSDFTGNFTTIALQCLQKLPASNN-RFTYNCDGHTFSFLVDNGFT 325
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+A +SVGR+IP AFLE I F + YG TA A ++N EF L +QM+Y
Sbjct: 326 YCVVAVESVGRQIPIAFLERIKDDFNKRYGGGRATTATAKSLNKEFGPKLKEQMQYCVEH 505
Query: 122 PN-ADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V+ VM+ENIDKV+DRG+++E+LVDK N++ FR+Q + R
Sbjct: 506 PEEVSKLAKVKAQVSEVKGVMMENIDKVIDRGEKIEVLVDKTENLRSQAQDFRQQGTQLR 685
Query: 181 STVWWRNVKL 190
+W++N+K+
Sbjct: 686 RKMWYQNMKI 715
>TC85889 similar to GP|22137292|gb|AAM91491.1 At1g04740/T1G11_1 {Arabidopsis
thaliana}, partial (94%)
Length = 992
Score = 139 bits (351), Expect = 5e-34
Identities = 74/190 (38%), Positives = 117/190 (60%), Gaps = 2/190 (1%)
Frame = +1
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++YA V+RGTV+LAEFT + N +IA Q L+K+P N+ +Y+ D + F+ +G T
Sbjct: 103 LIYAFVSRGTVILAEFTEFSGNFNSIAFQCLQKLPSTNNKF-TYNCDNHTFNYLIDNGYT 279
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYG-RAVLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+AD++ GR++P AFLE + FV YG TA ++N EF L + M+Y
Sbjct: 280 YCVVADETTGRQVPMAFLERVKDDFVSKYGGEKASTAPPNSLNKEFGPKLKEHMQYCVDH 459
Query: 122 PNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P+ ++ ++K ++S+V+ VM+ENI+KVLDRG+++ELLVDK N+ FR R
Sbjct: 460 PDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTDNLHHQAQDFRSSGTSIR 639
Query: 181 STVWWRNVKL 190
+W +N+K+
Sbjct: 640 RKMWLQNMKV 669
>TC85890 similar to SP|P47192|SYBR_ARATH Synaptobrevin-related protein.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (95%)
Length = 1087
Score = 138 bits (347), Expect = 1e-33
Identities = 72/190 (37%), Positives = 119/190 (61%), Gaps = 2/190 (1%)
Frame = +3
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++YA V+RG+V+L+E+T + N +IA Q L+K+P +N+ +Y+ D + F+ +G T
Sbjct: 123 LIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKF-TYNCDGHTFNYLVDNGYT 299
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+AD++VGR++P AFLE + FV YG TA ++N EF L + M+Y
Sbjct: 300 YCVVADETVGRQVPVAFLERVKDDFVAKYGGGKASTAAPNSLNKEFGPKLKEHMQYCVDH 479
Query: 122 PN-ADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V+ VM+ENI+KVLDRG+++ELLVDK N+ FR + R
Sbjct: 480 PEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIR 659
Query: 181 STVWWRNVKL 190
+W +N+K+
Sbjct: 660 RKMWLQNMKI 689
>TC90078 similar to GP|23617131|dbj|BAC20811. putative synaptobrevin {Oryza
sativa (japonica cultivar-group)}, partial (84%)
Length = 975
Score = 132 bits (333), Expect = 6e-32
Identities = 71/189 (37%), Positives = 116/189 (60%), Gaps = 2/189 (1%)
Frame = +2
Query: 4 LYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTV 63
+Y+ VARGT+VLAE+T T N AIA Q L+K+P +N+ +YS D + F+ DG
Sbjct: 116 IYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKF-TYSCDHHTFNFLVEDGYAY 292
Query: 64 LCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVL-TAEAYAMNDEFSRVLNQQMEYFSSDP 122
+A +SV ++I AFLE + F + YG TA A ++N EF V+ + M+Y
Sbjct: 293 CVVAKESVSKQISIAFLERVKADFKKRYGVGKADTAIAKSLNKEFGPVMKEHMKYIIDHA 472
Query: 123 NA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRS 181
+++ ++K ++S+V+++M+ENIDK +DRG+ L +L DK ++ FRKQ + R
Sbjct: 473 EEIEKLLKVKAQVSEVKSIMLENIDKAIDRGENLSVLSDKTETLRAQAQDFRKQGTQVRR 652
Query: 182 TVWWRNVKL 190
+W++N+K+
Sbjct: 653 KMWYQNMKI 679
>BF003202 similar to PIR|F86180|F861 hypothetical protein [imported] -
Arabidopsis thaliana, partial (41%)
Length = 325
Score = 73.6 bits (179), Expect = 5e-14
Identities = 37/89 (41%), Positives = 57/89 (63%)
Frame = +3
Query: 4 LYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTV 63
+YA V+RGTV+LAEFT ++ +IA Q L+K+P N+ +Y+ D + F+ +G T
Sbjct: 3 IYAFVSRGTVILAEFTERGADSNSIALQGLQKLPSTNNKF-TYNCDNHTFNYLIDNGYTY 179
Query: 64 LCMADDSVGRRIPFAFLEEIHQRFVRSYG 92
+AD++ GR++P AFLE + FV YG
Sbjct: 180CVVADETTGRQVPMAFLERVKDDFVSKYG 266
>TC77301 similar to GP|4097579|gb|AAD00116.1| NTGP1 {Nicotiana tabacum},
complete
Length = 1037
Score = 63.9 bits (154), Expect = 4e-11
Identities = 36/151 (23%), Positives = 78/151 (50%)
Frame = +2
Query: 28 IARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTVLCMADDSVGRRIPFAFLEEIHQRF 87
+ R + + P V + + Y H +GL + DD R F+ L ++ +
Sbjct: 302 VGRTVANRTPQGQRQSVQHEE--YKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEY 475
Query: 88 VRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSSDPNADRINRLKGEMSQVRNVMIENIDK 147
++S+G + + +A + E LN+ + F AD++ +++ E+ + + ++ + ID
Sbjct: 476 IKSFGESWRSIQADST--EPWPYLNEALAKFQDPAEADKLLKIQRELDETKIILHKTIDS 649
Query: 148 VLDRGDRLELLVDKAANMQGNTFRFRKQARR 178
VL RG++L+ LV+K++++ + F KQA++
Sbjct: 650 VLARGEKLDSLVEKSSDLSAASQMFYKQAKK 742
>TC80147 similar to GP|19310827|gb|AAL85144.1 putative vesicle transport
protein {Arabidopsis thaliana}, complete
Length = 1249
Score = 52.4 bits (124), Expect = 1e-07
Identities = 30/139 (21%), Positives = 62/139 (44%)
Frame = +3
Query: 39 NNDTHVSYSQDRYIFHVKRTDGLTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTA 98
N + +S Y+FH + L M D + +++ F +LEE+ F R G + TA
Sbjct: 252 NEASRMSVESGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEELRNEFERVNGSQIETA 431
Query: 99 EAYAMNDEFSRVLNQQMEYFSSDPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELL 158
+F + + + + I +L E+ +V +M N+ +VL G++L+ +
Sbjct: 432 ARPYAFIKFDAFIQKTKKLYQDTQTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEQLDQV 611
Query: 159 VDKAANMQGNTFRFRKQAR 177
++ + + + +AR
Sbjct: 612 SQLSSRLSSESRIYADKAR 668
>BG585788 homologue to GP|7268326|emb SYBL1 like protein {Arabidopsis
thaliana}, partial (65%)
Length = 847
Score = 50.8 bits (120), Expect = 3e-07
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +2
Query: 4 LYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTV 63
+Y+ VARGT+VLAE+T T N AIA Q L+K+P +N+ +YS D + F+ DG
Sbjct: 62 IYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNN-KFTYSCDHHTFNFLVEDGYVS 238
Query: 64 L 64
L
Sbjct: 239 L 241
>BG648270 similar to GP|22137292|gb At1g04740/T1G11_1 {Arabidopsis thaliana},
partial (59%)
Length = 835
Score = 33.9 bits (76), Expect = 0.040
Identities = 16/43 (37%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Frame = +2
Query: 107 FSRVLNQQMEYFSSDPN-ADRINRLKGEMSQVRNVMIENIDKV 148
F L + M+Y P ++ ++K ++SQV++VM+ENID+V
Sbjct: 593 FRPKLKEHMQYCVEHPEEVSKLAKVKAQVSQVQDVMLENIDQV 721
>AL369327 similar to PIR|T48933|T48 WD repeat domain protein - Arabidopsis
thaliana, partial (4%)
Length = 503
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = +3
Query: 102 AMNDEFSRVLNQQMEYFSS----DPNADRINRLKGEMSQVRNVMIENIDKVLDRGD 153
A N + R+LN+ M+ S DPN D++ + + S +IEN +D+ D
Sbjct: 96 ASNRKVQRLLNEFMDLLSEFEIVDPNQDQMALVLPKSSSPATKLIENSSVAIDKED 263
>AJ501851 similar to PIR|F86180|F861 hypothetical protein [imported] -
Arabidopsis thaliana, partial (12%)
Length = 121
Score = 28.1 bits (61), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 3 ILYALVARGTVVLAEFTGTTTN 24
++Y+ VARG V+LAE T T N
Sbjct: 50 LIYSFVARGMVILAEHTNFTGN 115
>BF647865
Length = 638
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 35 KIPGNNDTHVSYSQDRYIFH 54
KIP N TH+S+S +IFH
Sbjct: 328 KIPYQNHTHISFSFQLFIFH 269
>TC82291 similar to PIR|D96519|D96519 mysoin-like protein 11013-7318
[imported] - Arabidopsis thaliana, partial (3%)
Length = 1566
Score = 26.9 bits (58), Expect = 4.8
Identities = 17/71 (23%), Positives = 34/71 (46%)
Frame = +3
Query: 103 MNDEFSRVLNQQMEYFSSDPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKA 162
+ND R L+ +Y DP+ + +K +Q + + ++I K+++ + + + VD
Sbjct: 117 LNDPDQRALDSGKDYCQFDPSNAETSLIKRARTQCQKDLNKSIGKMIELIEGINMPVDD- 293
Query: 163 ANMQGNTFRFR 173
N N F R
Sbjct: 294 -NDNSNPFMVR 323
>TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22 {Arabidopsis
thaliana}, partial (74%)
Length = 2270
Score = 26.9 bits (58), Expect = 4.8
Identities = 17/70 (24%), Positives = 28/70 (39%), Gaps = 2/70 (2%)
Frame = -1
Query: 56 KRTDGLTVLCMADDSVGRRIPFAFLEEIH--QRFVRSYGRAVLTAEAYAMNDEFSRVLNQ 113
K D L++ C +G + F H Q FVR ++ + + +N+
Sbjct: 2147 KNKDALSLFCREPVPMGHKFILYFPHGFHAPQLFVRCPSMLSTSSTNIIVGETLDASVNK 1968
Query: 114 QMEYFSSDPN 123
+FSS PN
Sbjct: 1967 ARTFFSSSPN 1938
>BQ144513 similar to GP|995935|gb|AA MAZ {Homo sapiens}, partial (3%)
Length = 1447
Score = 26.2 bits (56), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 173 RKQARRFRSTVWWRNVK 189
R ARR RS +WWR V+
Sbjct: 1175 RADARRNRSRLWWRGVE 1225
>TC76664 weakly similar to PIR|T08541|T08541 hypothetical protein F27B13.40 -
Arabidopsis thaliana, partial (38%)
Length = 1860
Score = 26.2 bits (56), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 164 NMQGNTFRFRKQARRFRSTVWWR 186
N G R K++RR R +WWR
Sbjct: 1531 NQMGRWLR*IKESRRKRCRIWWR 1599
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,204,480
Number of Sequences: 36976
Number of extensions: 40903
Number of successful extensions: 335
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of query: 191
length of database: 9,014,727
effective HSP length: 91
effective length of query: 100
effective length of database: 5,649,911
effective search space: 564991100
effective search space used: 564991100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146941.5