BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.18 + phase: 0 /pseudo/partial
(211 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90720 similar to PIR|C96511|C96511 probable heat shock transcr... 437 e-123
TC89188 similar to PIR|S59541|S59541 heat shock transcription fa... 182 1e-46
TC86533 similar to PIR|T00825|T00825 probable heat shock transcr... 174 3e-44
TC86176 similar to PIR|S59538|S59538 heat shock transcription fa... 160 4e-40
TC90005 similar to SP|P41153|HSF8_LYCPE Heat shock factor protei... 156 6e-39
TC81889 similar to SP|Q9T0D3|HSF7_ARATH Heat shock factor protei... 128 1e-38
TC79192 similar to GP|14517387|gb|AAK62584.1 AT4g13980/dl3030c {... 145 1e-35
TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transc... 140 4e-34
TC80427 similar to SP|Q9S7U5|HSF5_ARATH Heat shock factor protei... 125 2e-29
TC81396 similar to PIR|T06535|T06535 heat shock transcription fa... 123 4e-29
BE319312 similar to GP|9279701|dbj heat shock transcription fact... 103 5e-23
AW697097 similar to PIR|T48399|T483 heat shock transcription fac... 91 3e-19
AW736595 similar to PIR|T48399|T483 heat shock transcription fac... 91 3e-19
BF632980 homologue to PIR|S59540|S595 heat shock transcription f... 79 1e-15
BF004353 similar to SP|P22335|HSF2_ Heat shock factor protein HS... 79 1e-15
BQ135539 similar to GP|9279701|dbj| heat shock transcription fac... 33 1e-05
TC93663 similar to PIR|T51945|T51945 heat shock transcription fa... 42 2e-04
TC80019 similar to PIR|G86446|G86446 unknown protein [imported] ... 28 2.0
TC90205 similar to GP|19879878|gb|AAM00191.1 guanine nucleotide-... 28 2.6
TC80218 weakly similar to GP|6175160|gb|AAF04886.1| unknown prot... 28 3.4
>TC90720 similar to PIR|C96511|C96511 probable heat shock transcription
factor [imported] - Arabidopsis thaliana, partial (41%)
Length = 880
Score = 437 bits (1123), Expect = e-123
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 4 TLERCEDNMVFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARD 63
TLERCEDNMVFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARD
Sbjct: 3 TLERCEDNMVFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARD 182
Query: 64 LLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQ 123
LLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQ
Sbjct: 183 LLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQ 362
Query: 124 QYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNL 183
QYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNL
Sbjct: 363 QYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNL 542
Query: 184 YNDIIYFIQNHVSPASPFEQRSNNSATI 211
YNDIIYFIQNHVSPASPFEQRSNNSATI
Sbjct: 543 YNDIIYFIQNHVSPASPFEQRSNNSATI 626
>TC89188 similar to PIR|S59541|S59541 heat shock transcription factor HSF29
- soybean (fragment), partial (72%)
Length = 1493
Score = 182 bits (461), Expect = 1e-46
Identities = 101/222 (45%), Positives = 135/222 (60%), Gaps = 26/222 (11%)
Frame = +3
Query: 15 TMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNF 74
T ESQ+S+P PFLTKTYQLVDD D +VSW++D T+F+VW+P EFARDLLP +FKHNNF
Sbjct: 42 TAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNF 221
Query: 75 SSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRK------------------ 116
SSFVRQLNTYGF+KVV DRWEFAND F++G K+LL +I RRK
Sbjct: 222 SSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANT 401
Query: 117 ------TPQHYQQQYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTA--LSEDNQRLRR 168
P Q+ + S +++ +S T TA L E+N+RL++
Sbjct: 402 VTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRS-TSCTTAPELVEENERLKK 578
Query: 169 KNFMLLSELSHMKNLYNDIIYFIQNHVSPASPFEQRSNNSAT 210
+N L +ELS +K L N+I+ + N+ S S + S ++AT
Sbjct: 579 ENMQLSNELSQLKGLCNNILAMMSNYNSGFSRQLESSTSAAT 704
>TC86533 similar to PIR|T00825|T00825 probable heat shock transcription
factor At2g41690 [imported] - Arabidopsis thaliana,
partial (38%)
Length = 1159
Score = 174 bits (440), Expect = 3e-44
Identities = 88/189 (46%), Positives = 119/189 (62%)
Frame = +3
Query: 19 QKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFV 78
+K P+PFL KTY LV+DP+TD ++SW+D+ T FVVW+P EFARD+LP FKH+NFSSFV
Sbjct: 408 RKCTPSPFLLKTYMLVEDPITDGVISWNDEGTAFVVWQPAEFARDILPTLFKHSNFSSFV 587
Query: 79 RQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDES 138
RQLNTYGF+KV RWEF N+ FKKG + LL EI RRK + QQQ + DE
Sbjct: 588 RQLNTYGFRKVATSRWEFCNERFKKGERELLSEIRRRKAWSNKQQQTVQNQ----DSDE- 752
Query: 139 ICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVSPA 198
S S+T T L ++N+RL+++N +L SEL+ MK +++ + H
Sbjct: 753 -----DQRSSSTSSTSGYTNLVDENKRLKKENVVLNSELTSMKRKCKELLDLVSIHTKKM 917
Query: 199 SPFEQRSNN 207
E + N+
Sbjct: 918 EEEEAKDND 944
>TC86176 similar to PIR|S59538|S59538 heat shock transcription factor HSF34
- soybean, partial (85%)
Length = 1535
Score = 160 bits (404), Expect = 4e-40
Identities = 86/193 (44%), Positives = 119/193 (61%), Gaps = 14/193 (7%)
Frame = +3
Query: 18 SQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSF 77
SQ+S PAPFL KTYQ+VDD TD ++SWS+ +FVVW+ +FARDLLP +FKHNNFSSF
Sbjct: 384 SQRSAPAPFLLKTYQMVDDLATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSF 563
Query: 78 VRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYE--------QS 129
VRQLNTYGF+K+V D+WEF+N+ FK+ KHLL +I RRKT Q E S
Sbjct: 564 VRQLNTYGFRKLVPDKWEFSNENFKRNHKHLLTDIKRRKTISQSSSQPVEVEKTSVNDNS 743
Query: 130 PQIFQPD----ESICWIDSPLPSPKSNTDI--LTALSEDNQRLRRKNFMLLSELSHMKNL 183
P D S +S P T + LS +N++L++ N L EL+ K
Sbjct: 744 PSNSGNDGVGSTSTSSSNSKNPGSVETTTLPQCVNLSSENEKLKKDNETLNCELARAKKQ 923
Query: 184 YNDIIYFIQNHVS 196
+++ F++++++
Sbjct: 924 CEELVAFLKDNLN 962
>TC90005 similar to SP|P41153|HSF8_LYCPE Heat shock factor protein HSF8
(Heat shock transcription factor 8) (HSTF 8), partial
(44%)
Length = 931
Score = 156 bits (394), Expect = 6e-39
Identities = 88/184 (47%), Positives = 103/184 (55%)
Frame = +3
Query: 21 SVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQ 80
+ P PFL+KTY +VDDP TD IVSWS +FVVW PPEFARDLLP FFKHNNFSSFVRQ
Sbjct: 210 NAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFVRQ 389
Query: 81 LNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDESIC 140
LNTYGF+KV DRWEFAN+ F +G K LL I RRK P H Q Q P C
Sbjct: 390 LNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRK-PAHGHTQQQAQQPHGQSSSVGAC 566
Query: 141 WIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVSPASP 200
L E+ +RL+R +L+ EL ++ +Q V
Sbjct: 567 VEVGKF-----------GLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQG 713
Query: 201 FEQR 204
EQR
Sbjct: 714 MEQR 725
>TC81889 similar to SP|Q9T0D3|HSF7_ARATH Heat shock factor protein 7 (HSF 7)
(Heat shock transcription factor 7) (HSTF 7). [Mouse-ear
cress], partial (40%)
Length = 1199
Score = 128 bits (321), Expect(2) = 1e-38
Identities = 69/157 (43%), Positives = 96/157 (60%), Gaps = 10/157 (6%)
Frame = +3
Query: 50 TTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLL 109
T+F+VW P FARDLLP +FKHNNFSSFVRQLNTYGFKKVV DRWEF+N+ F++G + LL
Sbjct: 288 TSFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLL 467
Query: 110 CEIHRRKTPQH----------YQQQYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTAL 159
+I RRK + + I P SI + + S S + AL
Sbjct: 468 GDIQRRKIVSASLAAASNAGVTATKTVPTAKPIASP--SISGEEQVISSNSSPSISTAAL 641
Query: 160 SEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVS 196
++N+RL+++N L E+ MK+LY++I + N+V+
Sbjct: 642 LDENERLKKENMQLAKEMEDMKSLYSNIFNLLSNYVN 752
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 17 ESQKSVPAPFLTKTYQLVDDPLTDHIVSWSD 47
ESQKS P PFLTKT+ LVD+ TD ++SW+D
Sbjct: 188 ESQKSTPTPFLTKTHHLVDEIATDDVISWND 280
>TC79192 similar to GP|14517387|gb|AAK62584.1 AT4g13980/dl3030c {Arabidopsis
thaliana}, partial (57%)
Length = 1686
Score = 145 bits (365), Expect = 1e-35
Identities = 65/94 (69%), Positives = 74/94 (78%)
Frame = +1
Query: 23 PAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLN 82
PAPFL KTY +VDD TD IVSWS D +F+VW PPEF+R LLP +FKHNNFSSF+RQLN
Sbjct: 76 PAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLN 255
Query: 83 TYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRK 116
TYGF+K +RWEFAN+ F K KHLL IHRRK
Sbjct: 256 TYGFRKADPERWEFANEEFIKDQKHLLKNIHRRK 357
>TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transcription
factor {Medicago sativa}, complete
Length = 1979
Score = 140 bits (353), Expect = 4e-34
Identities = 68/103 (66%), Positives = 79/103 (76%)
Frame = +1
Query: 18 SQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSF 77
S S+P PFL KTY++VDD +D IVSWS +FVVW PPEFAR LLP FFKHNNFSSF
Sbjct: 655 SSSSLP-PFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSF 831
Query: 78 VRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQH 120
+RQLNTYGF+KV ++WEFAND F +G HL+ IHRRK P H
Sbjct: 832 IRQLNTYGFRKVDPEQWEFANDDFLRGQPHLMKNIHRRK-PVH 957
>TC80427 similar to SP|Q9S7U5|HSF5_ARATH Heat shock factor protein 5 (HSF 5)
(Heat shock transcription factor 5) (HSTF 5). [Mouse-ear
cress], partial (27%)
Length = 642
Score = 125 bits (313), Expect = 2e-29
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Frame = +2
Query: 24 APFLTKTYQLVDDPLTDHIVSWS-DDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLN 82
APFL K Y +V+DP TD I+SWS D +F++ +F+ LLPN+FKHNNFSSFVRQLN
Sbjct: 167 APFLNKCYDMVEDPSTDSIISWSADSNNSFIISNADQFSLTLLPNYFKHNNFSSFVRQLN 346
Query: 83 TYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTP 118
YGF+K+ AD WEFAN+ F +G KHLL I RRK P
Sbjct: 347 IYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHP 454
>TC81396 similar to PIR|T06535|T06535 heat shock transcription factor A -
garden pea (fragment), partial (91%)
Length = 1138
Score = 123 bits (309), Expect = 4e-29
Identities = 67/159 (42%), Positives = 90/159 (56%)
Frame = +3
Query: 23 PAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLN 82
P PFLTKT+ +V+DP TD IVSWS +FVVW +F+ +LP +FKH+NFSSFVRQLN
Sbjct: 180 PPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLN 359
Query: 83 TYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDESICWI 142
TYGF+KV DRWEFAN+ F G ++LL I RR+ Q E + E
Sbjct: 360 TYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNLTQSQAMQQETGGSCIELGE----- 524
Query: 143 DSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMK 181
L + +RLRR +L++E+ ++
Sbjct: 525 --------------FGLEGEIERLRRDRAVLMAEIVKLR 599
>BE319312 similar to GP|9279701|dbj heat shock transcription factor-like
protein {Arabidopsis thaliana}, partial (33%)
Length = 707
Score = 103 bits (257), Expect = 5e-23
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = +2
Query: 46 SDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGA 105
S +FVVW P F+ LLP FFKHNNFSSFVRQLNTYGFKKV ADRWEFAN+ F KG
Sbjct: 2 STGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLKGQ 181
Query: 106 KHLLCEIHRRKTPQHYQQQYYEQS 129
K LL I RRK Q Q + S
Sbjct: 182 KILLKNIRRRKANQSQVMQALDPS 253
>AW697097 similar to PIR|T48399|T483 heat shock transcription factor-like
protein - Arabidopsis thaliana, partial (14%)
Length = 640
Score = 90.9 bits (224), Expect = 3e-19
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +2
Query: 19 QKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFV 78
Q S PFL+KT+ LVDDP + I+SWS + +FVVW P EFAR +LP FKHNNFSSFV
Sbjct: 284 QMSPVPPFLSKTFDLVDDPSLNPIISWSSNGGSFVVWDPLEFARIILPRHFKHNNFSSFV 463
Query: 79 RQLNTY 84
RQLNTY
Sbjct: 464 RQLNTY 481
>AW736595 similar to PIR|T48399|T483 heat shock transcription factor-like
protein - Arabidopsis thaliana, partial (16%)
Length = 465
Score = 90.9 bits (224), Expect = 3e-19
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +3
Query: 19 QKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFV 78
Q S PFL+KT+ LVDDP + I+SWS + +FVVW P EFAR +LP FKHNNFSSFV
Sbjct: 147 QMSPVPPFLSKTFDLVDDPSLNPIISWSSNGGSFVVWDPLEFARIILPRHFKHNNFSSFV 326
Query: 79 RQLNTY 84
RQLNTY
Sbjct: 327 RQLNTY 344
>BF632980 homologue to PIR|S59540|S595 heat shock transcription factor HSF31
- soybean (fragment), partial (31%)
Length = 526
Score = 79.3 bits (194), Expect = 1e-15
Identities = 48/94 (51%), Positives = 57/94 (60%), Gaps = 15/94 (15%)
Frame = +2
Query: 129 SPQIFQPDESIC-WIDSP-LPSPKS-------------NTDILTALSEDNQRLRRKNFML 173
SP DE + W DSP L SP NT + TALSEDN+RLRR N ML
Sbjct: 74 SPSNDYSDEQLNNWCDSPPLTSPSFGNGGTQTTATNNYNTSV-TALSEDNERLRRSNNML 250
Query: 174 LSELSHMKNLYNDIIYFIQNHVSPASPFEQRSNN 207
+SEL+HMK LYNDIIYF+QNHV P +P S++
Sbjct: 251 MSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSS 352
>BF004353 similar to SP|P22335|HSF2_ Heat shock factor protein HSF24 (Heat
shock transcription factor 24) (HSTF 24), partial (17%)
Length = 406
Score = 79.0 bits (193), Expect = 1e-15
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Frame = +1
Query: 23 PAPFLTKTYQLVDDPLTDH----IVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFV 78
PAPFL KTY L++ + IVSW+++ FVVW P EF+ LP +FKHNNFSSF+
Sbjct: 37 PAPFLLKTYGLLEQGIEGENGIKIVSWNEEGNGFVVWSPAEFSELTLPKYFKHNNFSSFI 216
Query: 79 RQLNTY 84
RQLNTY
Sbjct: 217 RQLNTY 234
>BQ135539 similar to GP|9279701|dbj| heat shock transcription factor-like
protein {Arabidopsis thaliana}, partial (7%)
Length = 714
Score = 33.5 bits (75), Expect(2) = 1e-05
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = +2
Query: 70 KHNNFSSFVRQLNTYGFKKVVADR 93
K NN+SS +RQLNTYGF + + +
Sbjct: 257 KRNNYSSSIRQLNTYGFNENIISK 328
Score = 32.0 bits (71), Expect(2) = 1e-05
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 23 PAPFLTKTYQLVDDPLTDH----IVSWSDDETTFVVWRPPE 59
PAPF+ KTY LV+ + SW++ F VW P E
Sbjct: 103 PAPFILKTYDLVEQGIEGENGFKNESWNEKGNGFDVWTPTE 225
>TC93663 similar to PIR|T51945|T51945 heat shock transcription factor HSF3
[imported] - Arabidopsis thaliana (fragment), partial
(3%)
Length = 588
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 18 SQKSVPAPFLTKTYQLVDDPLTDHIVSW 45
S+K APFLTKTY +++DPLT+ ++ W
Sbjct: 504 SKKXAAAPFLTKTYXMIEDPLTNDVIPW 587
>TC80019 similar to PIR|G86446|G86446 unknown protein [imported] - Arabidopsis
thaliana, partial (35%)
Length = 1518
Score = 28.5 bits (62), Expect = 2.0
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Frame = -2
Query: 138 SICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSE---------LSHMKNLYNDII 188
+ICWI+ LP P+ + ++ +R NF + ++ L +K+ Y +
Sbjct: 1322 TICWIEEGLPKPQLSCNL-------GHGVRPNNFDIFTKKP*KTRCCFLQRVKSTYQRNL 1164
Query: 189 YFI--QNHVSPASP 200
++ QNHV SP
Sbjct: 1163 KYVKFQNHVMKLSP 1122
>TC90205 similar to GP|19879878|gb|AAM00191.1 guanine nucleotide-exchange
protein GEP2 {Oryza sativa}, partial (20%)
Length = 1438
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -2
Query: 106 KHLLCEIHRRKTPQHYQQQYYEQSPQ 131
K LL HR+ TPQHY EQ PQ
Sbjct: 726 KPLLTTSHRKTTPQHYSSN--EQMPQ 655
>TC80218 weakly similar to GP|6175160|gb|AAF04886.1| unknown protein
{Arabidopsis thaliana}, partial (43%)
Length = 956
Score = 27.7 bits (60), Expect = 3.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 113 HRRKTPQHYQQQYYEQSPQIFQPDESICWIDSPLPSPKSNTDI 155
H +K Q QQQ + Q++QP +PLPS N DI
Sbjct: 193 HSKKQRQVQQQQQQQPQKQLYQPFRP---PPTPLPSKYDNLDI 312
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,504,544
Number of Sequences: 36976
Number of extensions: 118441
Number of successful extensions: 644
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of query: 211
length of database: 9,014,727
effective HSP length: 92
effective length of query: 119
effective length of database: 5,612,935
effective search space: 667939265
effective search space used: 667939265
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146941.18