TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146940.4 + phase: 1 /pseudo
         (674 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidop...    33  0.27
TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative pro...    32  0.79
CB892335 similar to GP|7715599|gb| F20B17.17 {Arabidopsis thalia...    30  3.9
TC79853 similar to GP|13605811|gb|AAK32891.1 AT5g36940/MLF18_60 ...    29  5.1
TC93559 homologue to PIR|F86426|F86426 hypothetical protein AAG3...    29  5.1

>TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidopsis
           thaliana}, partial (58%)
          Length = 1171

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPINDELLD----DHHDNWVLED---S 621
           +K+N+++ + LNDLV++ YNL L    N+  +   +  +LL     D    WV E+   S
Sbjct: 720 EKKNKIDRETLNDLVYINYNLKL----NRQMSAKSLEVDLLQFDDIDMTSEWVEENETVS 887

Query: 622 PP 623
           PP
Sbjct: 888 PP 893


>TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative protein
           {Arabidopsis thaliana}, partial (14%)
          Length = 907

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
 Frame = +3

Query: 571 RNRLEHQRLNDLVFVRYNLMLEN--RNNKIRNYDPINDELLDDHHDNWV 617
           RN +E Q   DLVFV YNL L     N +  + DP++ + + +  D W+
Sbjct: 399 RNYIERQHFTDLVFVHYNLRLRQMFMNKEQESSDPLSFDNICNVED-WI 542


>CB892335 similar to GP|7715599|gb| F20B17.17 {Arabidopsis thaliana}, partial
           (27%)
          Length = 788

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 178 YWLYSYGRWVD*RG*ENSDKHFSLLP*RNDFYQIC*CFWCFKNW*DVV*AFQGSSVIYWP 237
           YWL+ Y R +D*   +      SL+  ++ F Q+  C   F+       +F   +   WP
Sbjct: 460 YWLHHYCRHMD*L*IKGHY*FLSLITIQDIFPQVSGCVCIFQEHKMACGSF*FCNSGVWP 639

Query: 238 *KCCSD 243
           *KCC++
Sbjct: 640 *KCCTN 657


>TC79853 similar to GP|13605811|gb|AAK32891.1 AT5g36940/MLF18_60
           {Arabidopsis thaliana}, partial (23%)
          Length = 782

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 345 CT*SHGNISRMDNFCLCKRC---QGQTICGTSL 374
           C+*SHGN  R +N C C R     G+  C TS+
Sbjct: 101 CS*SHGNWCRCNNRCWCIRSSWNSGKGTCWTSI 199


>TC93559 homologue to PIR|F86426|F86426 hypothetical protein AAG30958.1
           [imported] - Arabidopsis thaliana, partial (1%)
          Length = 894

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
 Frame = +1

Query: 96  KCVANQGSCRKV*SCTC-KMVHCCIYSLQCSKFTIFSVC 133
           KCV+ +GSC     C C +   CCI    CS F +FS+C
Sbjct: 451 KCVSEKGSC-----CNCHRFAICCI---ACS-FGLFSIC 540


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.366    0.162    0.645 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,920,937
Number of Sequences: 36976
Number of extensions: 480003
Number of successful extensions: 8194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2577
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 3555
length of query: 674
length of database: 9,014,727
effective HSP length: 103
effective length of query: 571
effective length of database: 5,206,199
effective search space: 2972739629
effective search space used: 2972739629
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 62 (28.5 bits)