BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146914.1 + phase: 0 /pseudo
(369 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15... 718 0.0
TC88447 similar to GP|21593015|gb|AAM64964.1 unknown {Arabidopsi... 71 8e-13
TC77946 homologue to GP|10334491|emb|CAC10207. putative splicing... 69 2e-12
TC78611 similar to GP|15450599|gb|AAK96571.1 AT5g17440/K3M16_10 ... 69 3e-12
TC81337 similar to GP|15723293|gb|AAL06332.1 U2 auxiliary factor... 68 6e-12
TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-... 66 2e-11
TC77695 similar to PIR|T09704|T09704 probable arginine/serine-ri... 62 5e-10
TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1 ... 58 7e-09
TC80228 similar to GP|21592725|gb|AAM64674.1 unknown {Arabidopsi... 55 3e-08
TC77947 homologue to GP|10334491|emb|CAC10207. putative splicing... 54 7e-08
BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkho... 54 1e-07
BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (... 54 1e-07
BQ137240 similar to PIR|F75311|F753 ABC transporter ATP-binding... 53 2e-07
BE325350 weakly similar to GP|13702821|gb| putative snRNP protei... 52 3e-07
TC88921 similar to SP|P92966|RS41_ARATH Arginine/serine-rich spl... 52 3e-07
TC81466 similar to GP|5821143|dbj|BAA83713.1 RNA binding protein... 51 8e-07
BI265072 similar to PIR|F96613|F96 hypothetical protein T15M6.6 ... 50 1e-06
TC81177 similar to GP|15293081|gb|AAK93651.1 unknown protein {Ar... 50 1e-06
BQ137258 similar to GP|5917666|gb| extensin-like protein {Zea ma... 49 2e-06
BE202962 similar to GP|20259449|gb| unknown protein {Arabidopsis... 49 3e-06
>TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15.10 -
Arabidopsis thaliana, partial (39%)
Length = 1269
Score = 718 bits (1854), Expect = 0.0
Identities = 368/369 (99%), Positives = 368/369 (99%)
Frame = +1
Query: 1 MEEEKAAAYYDELTRKGEGAAKFKQGLGFSTSTSNDAVPKPGSSLVSSSSFLSQFVKASS 60
MEEEKAAAYYDELTRKGEGAAKFKQGLGFSTSTSNDAVPKPGSSLVSSSSFLSQFVKASS
Sbjct: 34 MEEEKAAAYYDELTRKGEGAAKFKQGLGFSTSTSNDAVPKPGSSLVSSSSFLSQFVKASS 213
Query: 61 SSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRS 120
SSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRS
Sbjct: 214 SSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRS 393
Query: 121 RSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGRE 180
RSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGRE
Sbjct: 394 RSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGRE 573
Query: 181 KGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVK 240
KGRRRS SVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVK
Sbjct: 574 KGRRRSXSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVK 753
Query: 241 AKMKLQLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVE 300
AKMKLQLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVE
Sbjct: 754 AKMKLQLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVE 933
Query: 301 SKREDQIQAAHDEAMFGAPAPPPPTSSTDSEPERENEKEVDNKKDLVSSLLSETVLARPK 360
SKREDQIQAAHDEAMFGAPAPPPPTSSTDSEPERENEKEVDNKKDLVSSLLSETVLARPK
Sbjct: 934 SKREDQIQAAHDEAMFGAPAPPPPTSSTDSEPERENEKEVDNKKDLVSSLLSETVLARPK 1113
Query: 361 GSWRDRVRQ 369
GSWRDRVRQ
Sbjct: 1114GSWRDRVRQ 1140
>TC88447 similar to GP|21593015|gb|AAM64964.1 unknown {Arabidopsis
thaliana}, partial (47%)
Length = 1079
Score = 70.9 bits (172), Expect = 8e-13
Identities = 55/172 (31%), Positives = 80/172 (45%), Gaps = 25/172 (14%)
Frame = +2
Query: 100 EKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSR 159
E+ N D + K +R RS R RDRD RRR R R+ Y DR+ DRD D R R
Sbjct: 200 EEENEDNEQPAEEPEKDYNRGRSPARERDRD-RRRDSHRHRDRDY-DREYDRDYDRDRYR 373
Query: 160 SRSDSDVDR---GRDRRKRERGREKGRRRSRSVSPRKQ---------------------- 194
R + D R GR+R +R+R R++GRRRS S S +
Sbjct: 374 LREEKDYGREREGRERERRDRDRDRGRRRSYSRSRSRSRDRKDHDGGDYRKRHARSSVSP 553
Query: 195 RRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVKAKMKLQ 246
RR + + K++ + E ++ K+ G D H +A A R++A + L+
Sbjct: 554 RRDGAEDGEPKKKKEKKEKKEKKDDGTD-----HPDPEIAEANRIRASLGLK 694
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/102 (31%), Positives = 42/102 (40%), Gaps = 5/102 (4%)
Frame = +2
Query: 97 RVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSG 156
R E R+ RD DR +RRS SRSR R RDR R+R++R S R + G
Sbjct: 398 REREGRERERRDRDRDRGRRRSYSRSRSRSRDRKDHDGGDYRKRHARSSVSPRRDGAEDG 577
Query: 157 RSRSRSD-----SDVDRGRDRRKRERGREKGRRRSRSVSPRK 193
+ + + D G D E R S + P K
Sbjct: 578 EPKKKKEKKEKKEKKDDGTDHPDPEIAEANRIRASLGLKPLK 703
>TC77946 homologue to GP|10334491|emb|CAC10207. putative splicing factor
{Cicer arietinum}, complete
Length = 2061
Score = 69.3 bits (168), Expect = 2e-12
Identities = 47/156 (30%), Positives = 75/156 (47%), Gaps = 5/156 (3%)
Frame = +3
Query: 57 KASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDR--- 113
K SS T + + RK + + + + + SR + N RD DR
Sbjct: 153 KDSSKKKNTDITDIKSERTYRKHGIDDDLDGGEDRRSKRSRGGDDENGSKKDRDRDRDRE 332
Query: 114 RKRRSRSRSRERYRDRDSRRRSRSRERNS--RYSDRDRDRDRDSGRSRSRSDSDVDRGRD 171
R R R RS R+R+RD R SR +ER RD++RDR+ + R R D + ++ R+
Sbjct: 333 RDREHRERSSGRHRERDGERGSREKEREKDVERGGRDKERDREREKERERRDKEREKERE 512
Query: 172 RRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKER 207
RR +ER +E+ R R ++ + E +SS ++R
Sbjct: 513 RRDKEREKERA*ERKRG---ERETKEEYESS*ERQR 611
Score = 55.5 bits (132), Expect = 3e-08
Identities = 49/160 (30%), Positives = 66/160 (40%), Gaps = 7/160 (4%)
Frame = +3
Query: 62 STTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRV----SEKTNRDYSSRDSDRRKRR 117
+TT T T + +R Q S + +K E S+K N D + S+R R+
Sbjct: 39 TTTKTLHKTERENRNRI*QWTSTSTEYLEKTVEEQPEDKDSSKKKNTDITDIKSERTYRK 218
Query: 118 SR-SRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRD--RRK 174
+ DR S+R + N DRDRDRDR+ R S R RD R
Sbjct: 219 HGIDDDLDGGEDRRSKRSRGGDDENGSKKDRDRDRDRERDREHRERSSGRHRERDGERGS 398
Query: 175 RERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMR 214
RE+ REK R R + R + + KER K E R
Sbjct: 399 REKEREKDVERGGRDKERDREREKERERRDKEREKERERR 518
Score = 55.1 bits (131), Expect = 4e-08
Identities = 56/178 (31%), Positives = 79/178 (43%), Gaps = 21/178 (11%)
Frame = +3
Query: 59 SSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRV-SEKTNRDYSSRDS-----D 112
+S+ST T D+ S KKK T + + SE+T R + D D
Sbjct: 99 TSTSTEYLEKTVEEQPEDKDSS--------KKKNTDITDIKSERTYRKHGIDDDLDGGED 254
Query: 113 RRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRD---RDRDSGRSRSRS------- 162
RR +RSR D + ++ R R+R DR+RD R+R SGR R R
Sbjct: 255 RRSKRSRGGD-----DENGSKKDRDRDR-----DRERDREHRERSSGRHRERDGERGSRE 404
Query: 163 ---DSDVDR-GRDR-RKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRK 215
+ DV+R GRD+ R RER +E+ RR R++R E + ER +G K
Sbjct: 405 KEREKDVERGGRDKERDREREKERERRDKEREKERERRDKEREKERA*ERKRGERETK 578
Score = 33.1 bits (74), Expect = 0.17
Identities = 40/165 (24%), Positives = 63/165 (37%), Gaps = 26/165 (15%)
Frame = +1
Query: 59 SSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKP--TTESRVSEKTNRDY-------SSR 109
+ S+ +TT ST A R + + L++ T V+E T D + R
Sbjct: 211 TGSTASTTISTAAKIGGARGHAAEMTRMALRRIAIETETVNVTENTANDLPVVTGRGTER 390
Query: 110 DSDRRKRRSRS----------RSRERYRD----RDSRRRSRSRERNSRYSDRDRDRDRDS 155
+ RKR R+ RE+ R R +R R R R S +R+++
Sbjct: 391 EVVERKRGRRT*REVGEIRRGIGREKRRGRGEIRKGKRNGREEIRRERRSVPEREKEEKE 570
Query: 156 GRSRSRSDSDVDRGR---DRRKRERGREKGRRRSRSVSPRKQRRS 197
RS S + DRG + R R R+K P + +R+
Sbjct: 571 RPRRSMSRPERDRGERDFENRDGRRFRDKKENVEPEADPERDQRT 705
Score = 33.1 bits (74), Expect = 0.17
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 152 DRDSGRSRSRSDSDVDRGRDRRKRERGR---EKGRRRSRSVSPRKQRRSEVKSSDVKERG 208
+R GR R ++ RG R KR RGR KG+R R R++R + + KER
Sbjct: 400 ERKRGRRT*REVGEIRRGIGREKR-RGRGEIRKGKRNGREEIRRERRSVPEREKEEKERP 576
Query: 209 KGSEMRKGKNVG 220
+ S R ++ G
Sbjct: 577 RRSMSRPERDRG 612
>TC78611 similar to GP|15450599|gb|AAK96571.1 AT5g17440/K3M16_10 {Arabidopsis
thaliana}, partial (91%)
Length = 1636
Score = 68.9 bits (167), Expect = 3e-12
Identities = 43/112 (38%), Positives = 62/112 (54%)
Frame = +1
Query: 76 DRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRS 135
++ ++LQ +NK +K + R S++ +RD RD + + R R S ER RD D R
Sbjct: 970 EKLAELQEERNKSRKIDRLDDRRSKERSRD---RDREPSRDRERGESHERGRDNDRR--- 1131
Query: 136 RSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSR 187
SR+R++R+ DRDR DRD R SR DS R R+R R ++ RR R
Sbjct: 1132 -SRDRDNRHHDRDRGYDRDRDRDSSRYDSRSRRRSRSRERSRDYDRHRRHDR 1284
Score = 53.9 bits (128), Expect = 1e-07
Identities = 45/107 (42%), Positives = 56/107 (52%)
Frame = +1
Query: 97 RVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSG 156
+++E SR DR R RS+ER RDRD R SR RER + +R RD DR S
Sbjct: 973 KLAELQEERNKSRKIDRLDDR---RSKERSRDRD-REPSRDRERGESH-ERGRDNDRRS- 1134
Query: 157 RSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSD 203
R R D DRG D R+R R+ R SRS R++ RS +S D
Sbjct: 1135 RDRDNRHHDRDRGYD---RDRDRDSSRYDSRS---RRRSRSRERSRD 1257
Score = 45.1 bits (105), Expect = 4e-05
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 111 SDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGR 170
++ ++ R++SR +R DR S+ RSR DRDR+ R R R +S +RGR
Sbjct: 979 AELQEERNKSRKIDRLDDRRSKERSR-------------DRDREPSRDRERGESH-ERGR 1116
Query: 171 DRRKRERGRE-KGRRRSRSVSPRKQRRSEVKSSDVKERGKGSE 212
D +R R R+ + R R + R S S + R + E
Sbjct: 1117 DNDRRSRDRDNRHHDRDRGYDRDRDRDSSRYDSRSRRRSRSRE 1245
>TC81337 similar to GP|15723293|gb|AAL06332.1 U2 auxiliary factor small
subunit {Arabidopsis thaliana}, partial (81%)
Length = 1190
Score = 67.8 bits (164), Expect = 6e-12
Identities = 44/100 (44%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 98 VSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGR 157
VS + +R S +S RR+RRSRSR RER RDRD R R R SDRDR RD D R
Sbjct: 635 VSSQRSRSRSRSNSPRRRRRSRSRERERPRDRDYDSRGR------RSSDRDRVRDGDRDR 796
Query: 158 SRSRSDSDVDRG-RDRRKRERGREKGRRRSRSVSPRKQRR 196
R R D D G R+ R+ G E+ R R + K+ +
Sbjct: 797 ERKRDSRDRDGGRRNGREAREGSEERRARIEQWNREKEEK 916
Score = 55.5 bits (132), Expect = 3e-08
Identities = 41/101 (40%), Positives = 52/101 (50%), Gaps = 4/101 (3%)
Frame = +2
Query: 100 EKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSR 159
+K R+ + ++ RSRSRS R RRRSRSRER +R RDRD DS R R
Sbjct: 602 KKIGRELRRKLVSSQRSRSRSRSNSPRR----RRRSRSRER-----ERPRDRDYDS-RGR 751
Query: 160 SRSD----SDVDRGRDRRKRERGREKGRRRSRSVSPRKQRR 196
SD D DR R+R++ R R+ GRR R + R
Sbjct: 752 RSSDRDRVRDGDRDRERKRDSRDRDGGRRNGREAREGSEER 874
Score = 49.3 bits (116), Expect = 2e-06
Identities = 40/105 (38%), Positives = 49/105 (46%)
Frame = +2
Query: 113 RRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDR 172
RRK S RSR R R RRR RSR SR +R RDRD DS RGR
Sbjct: 623 RRKLVSSQRSRSRSRSNSPRRRRRSR---SRERERPRDRDYDS------------RGRRS 757
Query: 173 RKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGK 217
R+R R+ R R R R R + + +E +GSE R+ +
Sbjct: 758 SDRDRVRDGDRDRERK---RDSRDRDGGRRNGREAREGSEERRAR 883
Score = 45.4 bits (106), Expect = 3e-05
Identities = 36/107 (33%), Positives = 49/107 (45%)
Frame = +2
Query: 75 SDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRR 134
S ++S+ +S N +++ + SR E+ RD D R RRS R R R DRD
Sbjct: 638 SSQRSRSRSRSNSPRRRRRSRSRERERPR----DRDYDSRGRRSSDRDRVRDGDRD---- 793
Query: 135 SRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREK 181
R R+R+S RDRD GR R + R R + REK
Sbjct: 794 -RERKRDS--------RDRDGGRRNGREAREGSEERRARIEQWNREK 907
Score = 32.3 bits (72), Expect = 0.30
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +2
Query: 169 GRDRRKRERGREKGRRRSRSVSPRKQRRS------EVKSSDVKERGKGSEMR 214
GR+ R++ ++ R RSRS SPR++RRS + D RG+ S R
Sbjct: 611 GRELRRKLVSSQRSRSRSRSNSPRRRRRSRSRERERPRDRDYDSRGRRSSDR 766
>TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-rich
splicing factor - alfalfa, partial (95%)
Length = 1494
Score = 65.9 bits (159), Expect = 2e-11
Identities = 49/116 (42%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Frame = +3
Query: 95 ESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRD 154
+ R+ E + R SSR R RSR R+ Y+++D RRRSRSR + +RDR R RD
Sbjct: 345 KGRIIETSPRSKSSRS---RSPSKRSRHRDDYKEKDYRRRSRSRSYDRH--ERDRHRGRD 509
Query: 155 SG---RSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKER 207
RSRSRS S +GR RGR RRSRS S RS V+ S + +R
Sbjct: 510 RDHRRRSRSRSASPGYKGRG-----RGRHDDERRSRSPSRSVDSRSPVRRSSIPKR 662
Score = 63.9 bits (154), Expect = 9e-11
Identities = 55/141 (39%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Frame = +3
Query: 90 KKPTTESRVSEKTNR---DYSSRDSDRRKRRSRS-----RSRERYRDRDSRRRSRSRERN 141
+ ++ SR K +R DY +D RR+ RSRS R R R RDRD RRRSRSR +
Sbjct: 372 RSKSSRSRSPSKRSRHRDDYKEKDY-RRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSAS 548
Query: 142 SRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRS----------RSVSP 191
Y R R R D RSRS S S R RR R +RS RS+SP
Sbjct: 549 PGYKGRGRGRHDDERRSRSPSRSVDSRSPVRRSSIPKRSPSPKRSPSPKRSPSLKRSISP 728
Query: 192 RKQ---RRSEVKSS-DVKERG 208
+K R+S ++ S D + RG
Sbjct: 729 QKSVSPRKSPLRESPDNRSRG 791
Score = 31.6 bits (70), Expect = 0.51
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Frame = +3
Query: 112 DRRKRRSRSRSRERYR---------DRDSRRRSRSRERNSRYSDRDRDRDR--------D 154
DRR SR + RY+ DR R RE +++ + +R
Sbjct: 186 DRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIET 365
Query: 155 SGRSRS-RSDSDVDRGR--------DRRKRERGR-----EKGRRRSRSVSPRKQRRSEVK 200
S RS+S RS S R R D R+R R R E+ R R R R++ RS
Sbjct: 366 SPRSKSSRSRSPSKRSRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSA 545
Query: 201 SSDVKERGKG 210
S K RG+G
Sbjct: 546 SPGYKGRGRG 575
>TC77695 similar to PIR|T09704|T09704 probable arginine/serine-rich splicing
factor - alfalfa, partial (83%)
Length = 1657
Score = 61.6 bits (148), Expect = 5e-10
Identities = 56/149 (37%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Frame = +1
Query: 95 ESRVSEKTNRDYSSRD---SDRR----------KRRSRSRSRERY--------RDRDSRR 133
+ R+ E + R SSR S RR +RRSRSRS +RY RDRD RR
Sbjct: 373 KGRIIETSPRSKSSRSRSPSRRRHHDDYRDKGYRRRSRSRSYDRYERDRYRGGRDRDYRR 552
Query: 134 RSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRR----KRERGREKGRRRSRSV 189
RSRSR + Y R R R D RSRSRS S R RR KR +K +S
Sbjct: 553 RSRSRSASPDYKRRGRGRYDDERRSRSRSRSVDSRSPARRSPSPKRSPSPKKSISPKKSP 732
Query: 190 SPRKQRRS-EVKSSDVKERGKGSEMRKGK 217
SP +R S + +S D + S +G+
Sbjct: 733 SPSPRRESPDTRSRDGRSPTSRSVSPRGR 819
Score = 35.0 bits (79), Expect = 0.046
Identities = 38/114 (33%), Positives = 42/114 (36%)
Frame = +1
Query: 99 SEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRS 158
S + DY R R RSRSR R D SRS R S R +
Sbjct: 562 SRSASPDYKRRGRGRYDDERRSRSRSRSVD------SRSPARRSPSPKRSPSPKKSISPK 723
Query: 159 RSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSE 212
+S S S D R R+ GR SRSVSPR R E S G E
Sbjct: 724 KSPSPSPRRESPDTRSRD-GRSP---TSRSVSPR--GRPEASQSPSPRNSDGDE 867
>TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1
{Arabidopsis thaliana}, partial (47%)
Length = 1538
Score = 57.8 bits (138), Expect = 7e-09
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = +3
Query: 74 DSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRR 133
D + ++ I + K K + SE + + DS+ RK+R +S + R D +S
Sbjct: 471 DYGKPEEISEIIDVKKDKEIKQKAKSESESEESKESDSELRKKRRKSYKKSRESDSESES 650
Query: 134 RSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRK 193
S +R R S R S SDSD + + RKR R R+ RRR +S S +K
Sbjct: 651 ESEVEDRKRRKS-----------RKYSESDSDTNSEEEDRKRRRRRKSSRRRRKS-SRKK 794
Query: 194 QRRSEVKSSDV-KERGKGSEMRKGK 217
+R S+ S+ E G RK K
Sbjct: 795 RRCSDSDESETDDESGYDDSGRKRK 869
Score = 44.7 bits (104), Expect = 6e-05
Identities = 36/141 (25%), Positives = 61/141 (42%), Gaps = 15/141 (10%)
Frame = +3
Query: 46 VSSSSFLSQFVKASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTE--------SR 97
V + Q K+ S S + S + RKS +S ++ + + +E SR
Sbjct: 510 VKKDKEIKQKAKSESESEESKESDSELRKKRRKSYKKSRESDSESESESEVEDRKRRKSR 689
Query: 98 VSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERN-----SRYSDRDRDRD 152
+++ D +S + DR++RR R SR R + +RR + + S Y D R R
Sbjct: 690 KYSESDSDTNSEEEDRKRRRRRKSSRRRRKSSRKKRRCSDSDESETDDESGYDDSGRKRK 869
Query: 153 RD--SGRSRSRSDSDVDRGRD 171
R S +S+ +S V G +
Sbjct: 870 RSKRSRKSKKKSSEPVSEGSE 932
Score = 27.3 bits (59), Expect = 9.6
Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 18/119 (15%)
Frame = -3
Query: 59 SSSSTTTTASTTAPSDSDR-KSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRR 117
S S +T +S++A S D + + SI ++++ + E+R NR Y R S
Sbjct: 426 SKYSASTISSSSASSICDTLHNSIPSILHQIQTR-YAENRCGRDRNRYYGVRIS----LE 262
Query: 118 SRSRSRERYRDR-----------------DSRRRSRSRERNSRYSDRDRDRDRDSGRSR 159
R RYR D RRRSRS + DR R R R+ G R
Sbjct: 261 DGFRLNFRYRGV*GFGFQGILNGDGGGLCDDRRRSRS*GYDGSEGDRWRHRSRECGGDR 85
>TC80228 similar to GP|21592725|gb|AAM64674.1 unknown {Arabidopsis
thaliana}, partial (42%)
Length = 798
Score = 55.5 bits (132), Expect = 3e-08
Identities = 47/106 (44%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Frame = +1
Query: 107 SSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDV 166
SS SDR R R R R+R RD+D R R R+RN RDRDR R S RSR+RS
Sbjct: 58 SSTMSDRD--RHRDRERDRRRDKDDRDRDVDRDRN-----RDRDRAR-SKRSRTRSP--- 204
Query: 167 DRGRDRRKRERG---REKGRRRSRSVS---PRKQRRSEVKSSDVKE 206
DR R R R R R RR R+ S PRK+ R + + KE
Sbjct: 205 DRVRSRHSRSRSPVDRSHRRRHHRTPSPDPPRKRHRRDSVDDEPKE 342
Score = 52.8 bits (125), Expect = 2e-07
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 1/163 (0%)
Frame = +1
Query: 141 NSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDR-RKRERGREKGRRRSRSVSPRKQRRSEV 199
+S SDRDR RDR+ R R + D D D RDR R R+R R K RSR+ SP + R
Sbjct: 58 SSTMSDRDRHRDRERDRRRDKDDRDRDVDRDRNRDRDRARSK---RSRTRSPDRVRSRHS 228
Query: 200 KSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVKAKMKLQLSETAARDSDRGV 259
+S +R R + D + H D++ + + ET SD
Sbjct: 229 RSRSPVDR--SHRRRHHRTPSPDPPRKRHRRDSVDDEPK-------EHKETKKVVSDFVD 381
Query: 260 GWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVESK 302
G + + + + EEV+ ED+ ++K +G F + + K
Sbjct: 382 GIAKEQQQQKQKENGEEVDVNEDEIEMMKMMGIPVGFDSTKGK 510
Score = 38.1 bits (87), Expect = 0.005
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 3/160 (1%)
Frame = +1
Query: 69 TTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRD 128
T + + SDR +++ + K + V NRD RD R R RSR+R R
Sbjct: 52 TLSSTMSDRDRHRDRERDRRRDKDDRDRDVDRDRNRD---RD---RARSKRSRTRSPDRV 213
Query: 129 RDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRER---GREKGRRR 185
R RSRS S R D R R R DS D ++ ++ ++ G +
Sbjct: 214 RSRHSRSRSPVDRSHRRRHHRTPSPDPPRKRHRRDSVDDEPKEHKETKKVVSDFVDGIAK 393
Query: 186 SRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAK 225
+ +K+ EV DV E G VG D K
Sbjct: 394 EQQQQKQKENGEEV---DVNEDEIEMMKMMGIPVGFDSTK 504
Score = 30.0 bits (66), Expect = 1.5
Identities = 25/60 (41%), Positives = 29/60 (47%), Gaps = 6/60 (10%)
Frame = -2
Query: 109 RDSDRRKR--RSRSRSRERYRD----RDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRS 162
R + R+R R R+RS ER RD SR R RSR + S R R R RSRS
Sbjct: 251 RSTGERERE*RERTRSGERVRDLLLRALSRSRLRSRSTSRSRSSLSRLRSLSLSRWRSRS 72
>TC77947 homologue to GP|10334491|emb|CAC10207. putative splicing factor
{Cicer arietinum}, partial (17%)
Length = 742
Score = 54.3 bits (129), Expect = 7e-08
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +3
Query: 119 RSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSR---SDSDVDRGRDRRKR 175
R R RE+ R+R+ RRS+SR S+RDR+ +R+ R RSR S S+ DR R+R +R
Sbjct: 3 REREREKERERERSRRSKSR------SERDREIEREE-RERSRRSISRSERDREREREER 161
Query: 176 ERGREKGRRRSRSVSPRKQRRSEVKSSDVK 205
+R R R R R RR K V+
Sbjct: 162 DRSRRSRSRSERDFEMRDSRRFREKKETVE 251
Score = 52.0 bits (123), Expect = 4e-07
Identities = 31/74 (41%), Positives = 42/74 (55%), Gaps = 5/74 (6%)
Frame = +3
Query: 109 RDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNS-RYSDRDRDRDRD----SGRSRSRSD 163
R+ +R + RSR RDR+ R R R R S S+RDR+R+R+ S RSRSRS+
Sbjct: 15 REKERERERSRRSKSRSERDREIEREERERSRRSISRSERDREREREERDRSRRSRSRSE 194
Query: 164 SDVDRGRDRRKRER 177
D + RR RE+
Sbjct: 195 RDFEMRDSRRFREK 236
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Frame = +3
Query: 89 KKKPTTESRVSEKTNRDYSSRDSDRR-KRRSRSRSRERY----RDRDSRRRSRSRERNSR 143
+++ + R E++ R S + DR +R R RSR RDR+ R R R R SR
Sbjct: 3 REREREKERERERSRRSKSRSERDREIEREERERSRRSISRSERDREREREERDRSRRSR 182
Query: 144 -YSDRDRDRDRDSGRSRSRSDS---DVDRGRDRR 173
S+RD + RDS R R + ++ + D RD+R
Sbjct: 183 SRSERDFEM-RDSRRFREKKETVEPEADPERDQR 281
Score = 37.7 bits (86), Expect = 0.007
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = +3
Query: 68 STTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYR 127
S + S S+R +++ + + ++ SR R+ RD R RRSRSRS +
Sbjct: 42 SRRSKSRSERDREIEREERERSRRSI--SRSERDREREREERD---RSRRSRSRSERDFE 206
Query: 128 DRDSRRRSRSRERNSRYSDRDRDR 151
RDSRR +E +D +RD+
Sbjct: 207 MRDSRRFREKKETVEPEADPERDQ 278
>BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkholderia
cepacia}, partial (6%)
Length = 1184
Score = 53.9 bits (128), Expect = 1e-07
Identities = 40/164 (24%), Positives = 69/164 (41%), Gaps = 4/164 (2%)
Frame = +3
Query: 85 QNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRY 144
+N+ K K T + ++ + R R+R RER RDR R R R+++
Sbjct: 627 KNQRKDKATRRRARTRHAEARRTTHAPRSEETRGRARRRERQRDRGQSRSHRRRQKDETQ 806
Query: 145 SDRDRDRD---RDSGRSRSRSDSDVDR-GRDRRKRERGREKGRRRSRSVSPRKQRRSEVK 200
R R+ R S +R R+ + R R +R R R G+ R+ +RR+ K
Sbjct: 807 EQEHRQREPRKRSSTSTRERAHARTARKARGAARRRRARTHGQERAHEQQKTSERRARRK 986
Query: 201 SSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVKAKMK 244
+ ++ K ++ R+ K + + D E V+A+ K
Sbjct: 987 EATERDDRKSADKRQAKEEREERNRERPANDTRTQKETVEAQTK 1118
Score = 50.4 bits (119), Expect = 1e-06
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 12/212 (5%)
Frame = +1
Query: 70 TAPSDSDRKSQLQ----SIQNKLKKKPTTESRVSEKTNR--------DYSSRDSDRRKRR 117
T +S +KS+ Q S + +K+ TT + E+ D S+ + R + +
Sbjct: 463 THKEESGKKSKQQQRSTSTAHNTQKRETTRAPARERAETARVTSNAGDDSTGAAKRIREK 642
Query: 118 SRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRER 177
+R R+ ER RD R + R +R +R +RD+ SR+ +D D+ RR +
Sbjct: 643 TRRRAAERGRDTP-RHDGQPTHREARRHVGERGEERDNETEGSRAATDADKKTRRRSKNT 819
Query: 178 GREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAE 237
GRE R R + + +R ++RG+ + R K+ + G
Sbjct: 820 GRE-NRAREAAPARESERTRAQHEKHAEQRGEDARGRTDKSARTSSKRQARG-------A 975
Query: 238 RVKAKMKLQLSETAARDSDRGVGWERFEFNKD 269
R + K + + +E A+ SD+ E+ E KD
Sbjct: 976 RDEKKQQKETTE-RAQISDKRKKREKRETEKD 1068
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/156 (21%), Positives = 61/156 (38%), Gaps = 2/156 (1%)
Frame = +2
Query: 58 ASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRR 117
A S T TT D+ R + +K+ TT R + RD+ R +
Sbjct: 653 APPSEDETRRGTT---DNPRTEKRGDTWESEEKRETTRQRAVAQPQTQTKRRDAGARTQA 823
Query: 118 SRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRG--RDRRKR 175
R+ ++++ + R+ S + ++ R R R+R+ D R R RKR
Sbjct: 824 ERTAQEKQHQHARASARAHSTKSTRSSEEKTRADARTRARARAAKDKREARETKRSNRKR 1003
Query: 176 ERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGS 211
+ + R KQR++ + ++ K +G+
Sbjct: 1004RQKERR*ATSERRERREKQRKTSKRHANAKRDSRGA 1111
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Frame = +2
Query: 63 TTTTASTTAPSDS-DRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRR---- 117
TT T D+ + + + ++ + + +P T+++ + R + R + ++ +
Sbjct: 686 TTDNPRTEKRGDTWESEEKRETTRQRAVAQPQTQTKRRDAGARTQAERTAQEKQHQHARA 865
Query: 118 -SRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRE 176
+R+ S + R + + R+ +R R + +D+ R++ RS + R +RE
Sbjct: 866 SARAHSTKSTRSSEEKTRADARTRARARAAKDKREARETKRSNRKRRQKERR*ATSERRE 1045
Query: 177 RGREKGRRRS-RSVSPRKQRRSEVKSSDVKERGKG 210
R REK R+ S R + ++ R K + + G+G
Sbjct: 1046R-REKQRKTSKRHANAKRDSRGANKDDERRSGGRG 1147
Score = 33.9 bits (76), Expect = 0.10
Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 13/231 (5%)
Frame = +2
Query: 127 RDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRS 186
RDR +R +R+ R + R R + + + + +KRE +++ ++ +
Sbjct: 185 RDRTARGGARTAHPTGRERQEGQGETRGGARGKKKEKRTNENQKQSKKREERKQERKKNN 364
Query: 187 RSVSPRKQRRSEVKSSDVKERGKGSE--MRKGKNVGVDYAKLIHG----------YDNMA 234
+++R E + +E+G + RK + AK + + N
Sbjct: 365 PKGDGAREKRREKEKKHGREKGPAARTGSRKDERTKKRAAKRANNNREARAQHTTHRNAR 544
Query: 235 PAERVKA-KMKLQLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQS 293
P ER +A + + S + R E + DAP ++E D + G +
Sbjct: 545 PQERRRASEQRPHESPATPVTTARARQKESEKRQGDAPPSEDETRRGTTDNPRTEKRGDT 724
Query: 294 FRFSAVESKREDQIQAAHDEAMFGAPAPPPPTSSTDSEPERENEKEVDNKK 344
+ E KRE Q A P T D+ + E+ K+
Sbjct: 725 WE---SEEKRETTRQRA-------VAQPQTQTKRRDAGARTQAERTAQEKQ 847
>BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (strain NZ2),
partial (10%)
Length = 1161
Score = 53.5 bits (127), Expect = 1e-07
Identities = 44/152 (28%), Positives = 71/152 (45%)
Frame = +2
Query: 57 KASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKR 116
+++ ++ T AS P+ + +Q + Q+ T S R +R DRRKR
Sbjct: 683 RSAQTARATRASGARPTTASAATQASTQQSG----ETRTSTAQHTGRRGRRARRRDRRKR 850
Query: 117 RSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRE 176
R R+R R +R +R+ ++R +D R R+R+R D+ RGR R R
Sbjct: 851 RHARRARTPARFASAR---VARDGSARATDERATRTTGDTRTRTRRDASA-RGRSRHARS 1018
Query: 177 RGREKGRRRSRSVSPRKQRRSEVKSSDVKERG 208
R + RRR RS + R+ R V+ + + RG
Sbjct: 1019RDND-ARRRERSTT-RRDARGRVRGARARARG 1108
Score = 34.7 bits (78), Expect = 0.060
Identities = 35/110 (31%), Positives = 50/110 (44%), Gaps = 5/110 (4%)
Frame = -3
Query: 91 KPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRD 150
+P+ +RVS T + R R+R+ R R+SRRR+R+ ++ S
Sbjct: 1003 RPSACARVSSSTRACVACRSRRSFVCRARAAVARDARRRESRRRARAARVSALSS----- 839
Query: 151 RDRDSGRSRSRSDSDVDRGRDR-----RKRERGREKGRRRSRSVSPRKQR 195
S R+ S S + R R R R R R R GRRRSR+ R+ R
Sbjct: 838 --ISSSRASSASSCMLCRARARLAALLRARLR-RGAGRRRSRAARARRAR 698
Score = 34.7 bits (78), Expect = 0.060
Identities = 35/127 (27%), Positives = 59/127 (45%), Gaps = 1/127 (0%)
Frame = +1
Query: 57 KASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKR 116
+ + ++ TT ST AP+ + R + +I+ ++ +R K++ + DRR
Sbjct: 805 RKTRTTRATTRSTKAPTRAPR-AHAGAIRVGARRARRQRARDRRKSDAN------DRRHT 963
Query: 117 RSRSRSRERYRDRDSRRRSRSRERNSR-YSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKR 175
+ S RER R +R +R SR D +R + R+R+R+ R RD R
Sbjct: 964 HAYSTRRERTRTVATRALARQ*RATSRAQHDTERRARTRARRARARARR---RARDARAA 1134
Query: 176 ERGREKG 182
R R+KG
Sbjct: 1135ARERKKG 1155
>BQ137240 similar to PIR|F75311|F753 ABC transporter ATP-binding protein -
Deinococcus radiodurans (strain R1), partial (4%)
Length = 1094
Score = 52.8 bits (125), Expect = 2e-07
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Frame = +3
Query: 82 QSIQNKLKKKPTTESRVSEKTNRDYSSR---DSDRRKRRSR------SRSRERYRDRDSR 132
Q+I + K+ ES + K N +++ + R+K R+R +R ER+R R R
Sbjct: 78 QAINDTTTKRERVESGRNRKKNDTQATKNDKEEPRKKERTRPRKPREARGPERWRKRKKR 257
Query: 133 RRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERG-------REKGRRR 185
R + + ++++ RDR +DR+ GR R ++ + G +RR+ G R R
Sbjct: 258 SRKKEK-KDAKTRTRDRQKDREGGRGRR*KQTNRESGGERRRARSGDAGTSETRRSTREP 434
Query: 186 SRSVSPRKQRR 196
RSV R +RR
Sbjct: 435 ERSVPRRPRRR 467
Score = 51.2 bits (121), Expect = 6e-07
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Frame = +3
Query: 61 SSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDR-RKRRSR 119
+ TTT + +K+ Q+ +N K++P + R + R+ +R +R RKR+ R
Sbjct: 87 NDTTTKRERVESGRNRKKNDTQATKND-KEEPRKKERTRPRKPRE--ARGPERWRKRKKR 257
Query: 120 SRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSG----RSRSRSDSDVDRGRDRRKR 175
SR +E+ +D +R R R ++R R + +R+SG R+RS + R R+
Sbjct: 258 SRKKEK-KDAKTRTRDRQKDREGGRGRR*KQTNRESGGERRRARSGDAGTSETRRSTREP 434
Query: 176 ERG--REKGRRRSRSVSPRK--QRRSEVKSSDVKERGKGSEMRK 215
ER R RRR+R V R R ++ + EMRK
Sbjct: 435 ERSVPRRPRRRRARPVVRRHSISTRHTARAHGARTTPTQHEMRK 566
Score = 36.2 bits (82), Expect = 0.021
Identities = 28/117 (23%), Positives = 55/117 (46%), Gaps = 13/117 (11%)
Frame = +3
Query: 85 QNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRY 144
+ K +K ++ T R+ +R+K +++ ++ + R++ R+R R R
Sbjct: 48 EGKRQKNEKHQAINDTTTKRERVESGRNRKKNDTQATKNDK---EEPRKKERTRPRKPRE 218
Query: 145 S----------DRDRDRDRDSGRSRSRS-DSDVDRGRDRRKRERGREKG--RRRSRS 188
+ R R +++ ++R+R D + GR RR ++ RE G RRR+RS
Sbjct: 219 ARGPERWRKRKKRSRKKEKKDAKTRTRDRQKDREGGRGRR*KQTNRESGGERRRARS 389
>BE325350 weakly similar to GP|13702821|gb| putative snRNP protein {Oryza
sativa}, partial (6%)
Length = 473
Score = 52.4 bits (124), Expect = 3e-07
Identities = 37/101 (36%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
Frame = +2
Query: 91 KPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRER-NSRYSDRDR 149
K E + E+ + + D+ + S + R DS RR R R+R + R S R+R
Sbjct: 113 KAQREQQALERRHNQVAGHKRDQEELLLLSTNNNINRSSDSDRRDRDRDRGHDRDSYRER 292
Query: 150 DRDRDSGRSRSRSDSDVDRGRDRRKRERGRE---KGRRRSR 187
DRDRD R R R + D R+RR R+R RE K R R+R
Sbjct: 293 DRDRDRERERDRDNRD----RERRHRDREREEENKVRERAR 403
Score = 49.7 bits (117), Expect = 2e-06
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Frame = +2
Query: 53 SQFVKASSSSTTTTASTTAP-----SDSDRKSQ-LQSIQNKLK--KKPTTESRVSEKTNR 104
S +K S+ +T P + + R+ Q L+ N++ K+ E + N
Sbjct: 35 SNTMKRSTDELAPVPATAIPKPVFLTKAQREQQALERRHNQVAGHKRDQEELLLLSTNNN 214
Query: 105 DYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDS 164
S DSDRR R R+R DRDS R R R+R DR+R+RDRD+ R R R
Sbjct: 215 INRSSDSDRR-----DRDRDRGHDRDS-YRERDRDR-----DRERERDRDN-RDRERRHR 358
Query: 165 DVDRGRDRRKRERGR 179
D +R + + RER R
Sbjct: 359 DREREEENKVRERAR 403
Score = 46.6 bits (109), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (54%)
Frame = +2
Query: 93 TTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRD 152
+T + ++ ++ D RD DR R R R+R RDR+ R +R+R R+ DR+R+ +
Sbjct: 200 STNNNINRSSDSDRRDRDRDRGHDRDSYRERDRDRDRERERDRDNRDRERRHRDRERE-E 376
Query: 153 RDSGRSRSRSDSDVDR 168
+ R R+R + +R
Sbjct: 377 ENKVRERARLEKLAER 424
>TC88921 similar to SP|P92966|RS41_ARATH Arginine/serine-rich splicing
factor RSP41. [Mouse-ear cress] {Arabidopsis thaliana},
partial (33%)
Length = 1419
Score = 52.4 bits (124), Expect = 3e-07
Identities = 49/147 (33%), Positives = 71/147 (47%), Gaps = 23/147 (15%)
Frame = +1
Query: 93 TTESRVSEKT-NRDYSSRDSDRRKRRSRSRSRERYRDRD-SRRRSRSRERNSRYSD---- 146
T S++ ++ + ++++RD DRR S R R+R RDR RRS S R R S
Sbjct: 241 TNNSKLMDRVISVEFAARDDDRRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGR 420
Query: 147 ------RDRDR-DRDSGRSRSRSDSDVDRGR----------DRRKRERGREKGRRRSRSV 189
R+R D G SRSRS +RG +RR+R+ G E R SRS
Sbjct: 421 GPSPYKRERSSPDYGRGNSRSRSPHRRERGSPAYGRRNPSPNRRERD-GAEAVRDTSRSP 597
Query: 190 SPRKQRRSEVKSSDVKERGKGSEMRKG 216
+++RR++ S E G+ E +KG
Sbjct: 598 YHKERRRTDRSRSHSLEEGERIEPQKG 678
>TC81466 similar to GP|5821143|dbj|BAA83713.1 RNA binding protein {Homo
sapiens}, partial (3%)
Length = 1109
Score = 50.8 bits (120), Expect = 8e-07
Identities = 58/241 (24%), Positives = 94/241 (38%), Gaps = 11/241 (4%)
Frame = +1
Query: 77 RKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRS-----------RSRSRER 125
RK Q+ I+ L R EK+N+ +S RR RRS RSR E
Sbjct: 37 RKRQMGDIKAILGGGGDRPRRSREKSNKREASPPRRRRSRRSESPERSGRRHHRSRRDES 216
Query: 126 YRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRR 185
DR+ RRR + R SR D DR R D R + R R + G
Sbjct: 217 ESDREDRRRHKGDRRRSRSPD-DRSRRHRHRSPLGSKDLISSTRRTDKHRLRNGDDGASA 393
Query: 186 SRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVKAKMKL 245
S S R+ E K +K + ++ R D + + + AP V+++ +
Sbjct: 394 SWSHRSRRDMSKERKGFSIKGSSRRTQKRDSPAAASD-SDPLEEFIGPAPPPPVRSRGRG 570
Query: 246 QLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVESKRED 305
S T+ D RF+ + D +D + + ++ A+ + ++FR + ++
Sbjct: 571 AASGTSGMD-------RRFQADYDPTMDMQPDDDVQNGAASWEDAVEAFRDRVKWQQNQE 729
Query: 306 Q 306
Q
Sbjct: 730 Q 732
Score = 41.2 bits (95), Expect = 6e-04
Identities = 62/220 (28%), Positives = 84/220 (38%), Gaps = 6/220 (2%)
Frame = +1
Query: 114 RKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRR 173
R RRSR +S +R RRRSR E R S R R R R S+SD R+ R
Sbjct: 88 RPRRSREKSNKREASPPRRRRSRRSESPER-SGRRHHRSR-----RDESESD----REDR 237
Query: 174 KRERGREKGRRRSRSVSPRKQR---RSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGY 230
+R +G RRRSRS R +R RS + S D+ + ++ + +N G D A
Sbjct: 238 RRHKG---DRRRSRSPDDRSRRHRHRSPLGSKDLISSTRRTDKHRLRN-GDDGA------ 387
Query: 231 DNMAPAERVKAKMKLQLSETAARDSDRGVGWERFEFNKDAPLDDEEVEGAEDDASLVKHI 290
S + + S R + ER F
Sbjct: 388 -----------------SASWSHRSRRDMSKERKGF------------------------ 444
Query: 291 GQSFRFSAVESKREDQIQAAHDE---AMFGAPAPPPPTSS 327
S + S+ +++ D AA D F PAPPPP S
Sbjct: 445 --SIKGSSRRTQKRDSPAAASDSDPLEEFIGPAPPPPVRS 558
>BI265072 similar to PIR|F96613|F96 hypothetical protein T15M6.6 [imported] -
Arabidopsis thaliana, partial (0%)
Length = 349
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/102 (34%), Positives = 50/102 (48%), Gaps = 6/102 (5%)
Frame = +3
Query: 110 DSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRY--SDRDRDRDRDSGRSRSR----SD 163
+ D+ RR+R R ER RDR S RSR + R+ SDR+ DR+ R R R +
Sbjct: 39 ERDKXDRRNRDRHSERDRDR-SHHRSRHDSDDPRHHRSDRNHREDREGSRDRDRVYDIDE 215
Query: 164 SDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVK 205
+ +GR + KR+ RE R S + + SE + D K
Sbjct: 216 REGSKGRSKSKRDEEREDSLERYSSHKRKDREHSEDRELDDK 341
>TC81177 similar to GP|15293081|gb|AAK93651.1 unknown protein {Arabidopsis
thaliana}, partial (28%)
Length = 632
Score = 50.4 bits (119), Expect = 1e-06
Identities = 48/129 (37%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Frame = +1
Query: 89 KKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRD 148
+KKPT E RV E++ S R SDRR+ R RY R RSRSR RD
Sbjct: 226 RKKPT-EMRVRERS----SGRHSDRRRSPPRYSRSPRYSRSPPRHRSRSR------GSRD 372
Query: 149 RDRDRDSGRSRSRSDSDVDRGRDRRKRERGREK---------GRRRSRSVSPRK---QRR 196
R SRS S DR R + RE+ G RSRS SP K + R
Sbjct: 373 YHSPPPKRREYSRSASPEDRRHSREGSQHSREREYSRSPPKNGDARSRSQSPVKGSVESR 552
Query: 197 SEVKSSDVK 205
S S DV+
Sbjct: 553 SPSPSRDVR 579
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/113 (29%), Positives = 42/113 (36%), Gaps = 6/113 (5%)
Frame = +1
Query: 73 SDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKR------RSRSRSRERY 126
SD R S + + P R + +RDY S RR+ R SRE
Sbjct: 277 SDRRRSPPRYSRSPRYSRSPPRH-RSRSRGSRDYHSPPPKRREYSRSASPEDRRHSREGS 453
Query: 127 RDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGR 179
+ R SRS +N R + + S SRS S S RD R R R
Sbjct: 454 QHSREREYSRSPPKNGDARSRSQSPVKGSVESRSPSPS-----RDVRAASRSR 597
>BQ137258 similar to GP|5917666|gb| extensin-like protein {Zea mays}, partial
(3%)
Length = 1053
Score = 49.3 bits (116), Expect = 2e-06
Identities = 44/170 (25%), Positives = 76/170 (43%), Gaps = 23/170 (13%)
Frame = +1
Query: 57 KASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDY-SSRDSDRRK 115
+ S+ST T A+ P + +N + + T E R K ++R ++R+
Sbjct: 469 RTDSTSTRTYATPKTPIHRTTRESSTDKENDINEIDTVERRAESKLGLHA*NARRTNRQT 648
Query: 116 RRSRSRSRERYRDRD--------SRRRSRSRERNSRYS-------DRDRDRDRDSGRSRS 160
RR++ R R+R D R +R+ E ++R + DR +RD +R+
Sbjct: 649 RRTQRRDRQRR*QSDRATAHASGDTRGTRAAESDARGARKRSG*GDRWTTDERDGSTTRA 828
Query: 161 RSDSDVDRGRDRRKRE-RGREKGRRR------SRSVSPRKQRRSEVKSSD 203
R+ V+R R+ +RE RG ++G RR +R+ R +RS D
Sbjct: 829 RAAYGVERAREAERRERRGAQRGERRRGRVRGARAGEERTDKRSTWDEED 978
Score = 33.5 bits (75), Expect = 0.13
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +2
Query: 119 RSRSRERYRDRDSRRR--SRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRE 176
RSR R +RR ++ +R+ + DRD R +G R+R+ + R R R RE
Sbjct: 578 RSRDERRVS*GSTRRTHAEQTDKRDVHRDETDRDGSRATGPPRTRAGTHGGRERRRATRE 757
Query: 177 ---RG--REKGRRRSRSVSPRKQRRSEVKSSDVKERGKG 210
RG E G R++R R+ R S RG+G
Sbjct: 758 ARARGAAEEIGGRQTRETGARRGRGQRTAS-----RGRG 859
>BE202962 similar to GP|20259449|gb| unknown protein {Arabidopsis thaliana},
partial (4%)
Length = 561
Score = 48.9 bits (115), Expect = 3e-06
Identities = 42/144 (29%), Positives = 72/144 (49%), Gaps = 14/144 (9%)
Frame = -2
Query: 94 TESRVSEKTNRDYSSRDSDRRKRRS------RSRSRERYRDRDSRRRSRSRERNSRYSDR 147
++S +S +N SS D R+++RS R + R++ RD+ RRR + R+ R S R
Sbjct: 554 SDSDMSSSSNISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDKRRRRRDK---RSKRRSKR 384
Query: 148 DRDRDRDSGRSRSRSDSDVD-RGRDRRKRERGREKGRRRSRSV----SPRKQRRSE---V 199
+ D DS S S D +D + ++ ++++R ++K +S SV +P R E +
Sbjct: 383 ESGSDSDSESSSSSDDESLDTQQQELKRKDRYQKKAELKSPSVVEKDAPTIHHRKEEAGM 204
Query: 200 KSSDVKERGKGSEMRKGKNVGVDY 223
+S+VK + E R G Y
Sbjct: 203 PASNVKTVKENGE-RHSNGTGAAY 135
Score = 33.1 bits (74), Expect = 0.17
Identities = 42/191 (21%), Positives = 72/191 (36%), Gaps = 42/191 (21%)
Frame = -2
Query: 59 SSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRS 118
S S +++++ ++ SD R+ + +S ++K K+ + R ++ R R KR
Sbjct: 554 SDSDMSSSSNISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDKRRRR--------RDKRSK 399
Query: 119 RSRSRERYRDRDSRRRSRSRERNSRYSDRDRDR-DRDSGRSRSRSDSDVDRGRD---RRK 174
R RE D DS S S + + ++ R DR ++ +S S V++ RK
Sbjct: 398 RRSKRESGSDSDSESSSSSDDESLDTQQQELKRKDRYQKKAELKSPSVVEKDAPTIHHRK 219
Query: 175 RERG---------REKGRR-----------------------------RSRSVSPRKQRR 196
E G +E G R RSRS SP++
Sbjct: 218 EEAGMPASNVKTVKENGERHSNGTGAAYRSDRSEERQPDVMDVHLGKSRSRSTSPKRPMS 39
Query: 197 SEVKSSDVKER 207
+ S + R
Sbjct: 38 KSMSISPRRSR 6
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.307 0.123 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,449,643
Number of Sequences: 36976
Number of extensions: 116192
Number of successful extensions: 3408
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2820
length of query: 369
length of database: 9,014,727
effective HSP length: 98
effective length of query: 271
effective length of database: 5,391,079
effective search space: 1460982409
effective search space used: 1460982409
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146914.1