BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.6 - phase: 0
(385 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 270 5e-73
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 160 1e-39
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 92 3e-30
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 115 2e-26
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 72 2e-25
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 108 3e-24
AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F... 57 6e-19
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 86 2e-17
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 84 7e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 84 7e-17
BG452576 weakly similar to GP|12005223|gb|A reverse transcriptas... 60 5e-14
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 72 3e-13
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 72 5e-13
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 65 4e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 59 4e-09
BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thalian... 55 6e-08
TC93418 37 1e-07
BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, ... 50 1e-06
TC91257 similar to GP|21434|emb|CAA36616.1|| ORF4 {Solanum tuber... 50 1e-06
CA921361 41 7e-04
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 270 bits (691), Expect = 5e-73
Identities = 136/241 (56%), Positives = 174/241 (71%)
Frame = +2
Query: 14 KVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDI 73
KVC+L KS+YGLKQASR+WY KLS LIS GY +SD +LF K S+ T LLVYVDDI
Sbjct: 17 KVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDI 196
Query: 74 VLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTG 133
VLAGND+ EIQ +K L + F IKDLG L++FLGLEVA S +GI + Q++Y L+LL +G
Sbjct: 197 VLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSG 376
Query: 134 TLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLD 193
L K + P D S +LH DS Y D ++YR L+GKL+YLT+TRPDISF VQQL QF+
Sbjct: 377 NLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVS 556
Query: 194 SPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFI 253
P H++AA +VL+YLKT+P GLF+ S+L L ++D+DW CP TR+S+TGY F+
Sbjct: 557 KPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFL 736
Query: 254 G 254
G
Sbjct: 737 G 739
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 160 bits (404), Expect = 1e-39
Identities = 80/217 (36%), Positives = 128/217 (58%)
Frame = +1
Query: 108 LEVAHSAKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRAL 167
+EV + +GI ICQ++Y DLL + G S P+ P +L +D++ VDA++Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 168 VGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLH 227
VG L+YL +TRPD+ + + + +F++ PT H A +VLRYL + G+ + R+ S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 228 LLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCEL 287
L Y+D+D+ G D R+S +GY F + VSW SKKQ V+ S+++AE+ A A C+
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 288 QWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFH 324
W+ +L L T S + CD+ S + ++ NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 92.0 bits (227), Expect(2) = 3e-30
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Frame = +1
Query: 27 QASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTI-TVLLVYVDDIVLAGNDLDEIQL 85
Q+ R W+++ + + GY +D +FIK +++ +L+VYVDDI L G+ I+
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 86 IKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTLGCK 138
+KN L F IKDLG LK+FLG+EVA KG +I Q++Y LDLL +T +GCK
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCK 339
Score = 57.8 bits (138), Expect(2) = 3e-30
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +2
Query: 135 LGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFL 192
L KPS PMD + +L D+ VD Y+ LVGKL+YL+ TRPDISF V + QF+
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 115 bits (289), Expect = 2e-26
Identities = 62/170 (36%), Positives = 104/170 (60%), Gaps = 2/170 (1%)
Frame = +1
Query: 206 VLRYLKTSPGTGLFFPRDSSLH--LLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSK 263
VL+YL S + L + + + L GY DAD+ G DTR+S++G+ F + + +SWK+
Sbjct: 16 VLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTISWKAN 195
Query: 264 KQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVF 323
+Q V+ S+++AEY A + WL ++ +L +T V + CDSQSA+H+A++ V+
Sbjct: 196 QQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVK-IHCDSQSAIHLANHQVY 372
Query: 324 HERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFNHL 373
HERTKH+DI H +R+ ++S + + ++S+E AD+ TK A H+
Sbjct: 373 HERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTKLKKHARATHV 522
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 72.4 bits (176), Expect(2) = 2e-25
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = +3
Query: 279 ALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVR 338
+L A E W+ L+ +L ++ + CDSQSALHIA NP FH RTKH+ I H VR
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQI-TVYCDSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 339 EKLQSGLMELFPISSQEQIADILTKALHPASF 370
E ++ G +++ I + + +AD +TK+++ F
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDKF 500
Score = 61.2 bits (147), Expect(2) = 2e-25
Identities = 32/75 (42%), Positives = 46/75 (60%)
Frame = +1
Query: 205 KVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKK 264
+++RY+K + G + F S L + GY D+D+ G D R+S TGY F + VSW SK
Sbjct: 7 RIMRYIKGTSGVAVCFG-GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKL 183
Query: 265 QQTVSRSSSEAEYRA 279
Q V+ S++EAEY A
Sbjct: 184 QTVVALSTTEAEYMA 228
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 108 bits (271), Expect = 3e-24
Identities = 55/147 (37%), Positives = 87/147 (58%)
Frame = +2
Query: 234 ADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYL 293
+DW G +TR+S +GY F +G +SW SKKQ V+ S++EAEY A + + WL +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 294 LTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISS 353
L ++ + + CD++SA+ ++ NPVFH R+KH+DI H +RE + + + +
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 354 QEQIADILTKALHPASFNHLIAKLSLL 380
+E+IADI TK L SF L L ++
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGMM 442
>AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F21P8.50 -
Arabidopsis thaliana, partial (4%)
Length = 723
Score = 57.0 bits (136), Expect(2) = 6e-19
Identities = 39/78 (50%), Positives = 46/78 (58%)
Frame = +3
Query: 207 LRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQ 266
L YLKT PG +F S+ H + G CP + R T +CF + SL+SWKSKKQ
Sbjct: 15 LHYLKT-PGKCIFVSNASNPHF------NRGSCPYSIR*TTEFCF-LSSSLISWKSKKQC 170
Query: 267 TVSRSSSEAEYRALAAAT 284
VSRS SEA RALA AT
Sbjct: 171 VVSRSFSEA**RALANAT 224
Score = 54.7 bits (130), Expect(2) = 6e-19
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +2
Query: 309 CDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALH 366
CD+ SALHIA+N VFHERT H + D ++V+ S +++L P +S++Q A LTK LH
Sbjct: 293 CDNISALHIAANMVFHERT*HRETDPYIVQ---GSRMLQLMPSASKDQPAYSLTKPLH 457
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 86.3 bits (212), Expect = 2e-17
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Frame = -3
Query: 196 TATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGK 255
TA H +AA ++L YLK SP +FFP S + + + D+D ++
Sbjct: 599 TAQHPQAAIQIL-YLKISPSQ*IFFP--S*IQIKAFCDSD*--IDQAA*TLENQSVIFAS 435
Query: 256 SLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSAL 315
S + R + + YR++ + CE++WL YLL DL T K L CD+QSA
Sbjct: 434 S*ATHSYAGNLKKKRYNFKI-YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAA 258
Query: 316 -HIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISS 353
HIA+N F ERTKH+++DCH+VR KLQ L + I S
Sbjct: 257 RHIAANSSFLERTKHIELDCHIVRVKLQLKLFHILHILS 141
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 84.3 bits (207), Expect = 7e-17
Identities = 39/105 (37%), Positives = 63/105 (59%), Gaps = 1/105 (0%)
Frame = +3
Query: 17 KLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTS-TITVLLVYVDDIVL 75
++ ++LYGLKQA R WY ++ + G+ + TLF+K + I ++ +YVDD++
Sbjct: 462 RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIF 641
Query: 76 AGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
GND + + K S+ F + DLG + +FLG+EV + KGI IC
Sbjct: 642 IGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVTQNEKGIYIC 776
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 84.3 bits (207), Expect = 7e-17
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Frame = +1
Query: 178 RPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFP---RDSSLHLLGYSDA 234
RPDI ++V + +F+ P H AA+++LRY++ + GL FP + L+ YSD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 235 DWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLL 294
DW G RRS +GY F + +SW +KKQ + SS EAEY A AT + WL ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 295 TDL 297
+L
Sbjct: 472 KEL 480
>BG452576 weakly similar to GP|12005223|gb|A reverse transcriptase-like
protein {Spiranthes hongkongensis}, partial (25%)
Length = 676
Score = 59.7 bits (143), Expect(3) = 5e-14
Identities = 42/106 (39%), Positives = 60/106 (55%)
Frame = +2
Query: 30 RKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNS 89
RK Y KL LIS GY +D ++F T+ LVY+DDIV A +D E QL+K+
Sbjct: 236 RK*Y*KLLSTLISLGYKQSPNDHSIF--SFGRRFTIFLVYLDDIVFARDDHSETQLVKSH 409
Query: 90 LHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTL 135
L F I LG L ++G+++A S I Q +Y ++LL ++G L
Sbjct: 410 LDKNFIIIGLGTL-HYVGVKIA*SES*IIDDQCKYTIELLEESGQL 544
Score = 28.5 bits (62), Expect(3) = 5e-14
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 15 VCKLDKSLYGLKQASRKWYEK 35
VCK S+YGLK A R+ Y K
Sbjct: 165 VCKFHNSIYGLKHAHRQ*YSK 227
Score = 26.2 bits (56), Expect(3) = 5e-14
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = +3
Query: 135 LGCKPSSIPMDPSQRLH----RDDSEPY 158
LG KPSS P DPS +L + S PY
Sbjct: 546 LGMKPSSTPRDPSLKLKLYNIYETSSPY 629
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 72.4 bits (176), Expect = 3e-13
Identities = 36/78 (46%), Positives = 44/78 (56%)
Frame = +1
Query: 1 MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
M PQG E VCKL+KSLYGLKQA R WYE L+ I G+ DP+L I
Sbjct: 433 MSQPQGFEAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQN 612
Query: 61 STITVLLVYVDDIVLAGN 78
L +YVDDI++ G+
Sbjct: 613 GACIYLXIYVDDILITGS 666
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 71.6 bits (174), Expect = 5e-13
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = -3
Query: 172 LYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGY 231
+ LT P+I+F++ L ++ +PT H + +YLK GLF+ +D S L+GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 232 SDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEA 275
+A + P RS TGY F G +++SW+S K T++ SS+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 65.1 bits (157), Expect = 4e-11
Identities = 34/74 (45%), Positives = 47/74 (62%), Gaps = 1/74 (1%)
Frame = -2
Query: 1 MKIPQGLEGIP-PHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRT 59
+K P G E P+ V +L+K+LYGLKQA R WYE+LS FL+ G+ D TLF+ +
Sbjct: 223 VKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTLFLLKR 44
Query: 60 TSTITVLLVYVDDI 73
+ ++ VYVDDI
Sbjct: 43 E*ELLIIQVYVDDI 2
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 58.5 bits (140), Expect = 4e-09
Identities = 28/73 (38%), Positives = 44/73 (59%)
Frame = +2
Query: 307 LVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALH 366
L CD SA ++ NPV+H R KH+ ID H VR+ +Q G +++ + + +Q+AD LTK L
Sbjct: 23 LRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLS 202
Query: 367 PASFNHLIAKLSL 379
+ L K+ +
Sbjct: 203 KSRHQLLRNKIGV 241
>BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thaliana}, partial
(30%)
Length = 675
Score = 54.7 bits (130), Expect = 6e-08
Identities = 29/83 (34%), Positives = 45/83 (53%)
Frame = -3
Query: 154 DSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTS 213
D D+ ++VG LLY+T T PD+SF++ + QF+ PT +F+ KV+R+ K
Sbjct: 664 DGSITADSKLVHSIVGALLYITVTCPDLSFSINKPSQFMHKPTQINFQQLKKVMRHPK-- 491
Query: 214 PGTGLFFPRDSSLHLLGYSDADW 236
L + L + +SDADW
Sbjct: 490 ----LTIKKLFDLQIYAFSDADW 434
>TC93418
Length = 533
Score = 37.0 bits (84), Expect(2) = 1e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 243 RRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCEL 287
R+ GY F+ ++LVS +S KQ V S+++ E+ +A TCEL
Sbjct: 35 RQPTLGYNIFVSENLVS*QSMKQNVVV*SNTKVEFPLMATITCEL 169
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 310 DSQSALHIASNPVFHERTKHLD 331
D+QSALH+ SN +FHE T H+D
Sbjct: 225 DNQSALHVTSNLIFHEWTNHID 290
>BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (5%)
Length = 657
Score = 50.4 bits (119), Expect = 1e-06
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Frame = -2
Query: 213 SPGTGLF-FPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRS 271
S GT + F R+ L + Y + G R S +GY F+G ++V K Q V+R
Sbjct: 548 SSGTQMIVFKRE*KLSMEVYXNTVCAGWIVDRGSTSGY*MFLGGNMVE*K---QNVVAR* 378
Query: 272 SSEAEYRALAAATCEL--QWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKH 329
+ + + + L L DL + L ++ IA NPV H RTKH
Sbjct: 377 VQRHNFELCSQGL*RVMDEELKIKLDDLIINYKDPMTLF*NNNFVSRIAHNPVQHYRTKH 198
Query: 330 LDIDCHVVREKLQSGLM 346
++ID H + EKL SGL+
Sbjct: 197 IEIDQHFIIEKLYSGLI 147
>TC91257 similar to GP|21434|emb|CAA36616.1|| ORF4 {Solanum tuberosum},
partial (8%)
Length = 854
Score = 50.1 bits (118), Expect = 1e-06
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +3
Query: 153 DDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLDS 194
D E + D YR LVGKL YLT TRPDIS+ V + QFL+S
Sbjct: 729 DQGETFSDPGRYRRLVGKLNYLTMTRPDISYAVSVVSQFLNS 854
>CA921361
Length = 466
Score = 41.2 bits (95), Expect = 7e-04
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Frame = -1
Query: 228 LLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCEL 287
L G+ D D PD R+SI+G S Q + R + L A L
Sbjct: 463 LKGFCDLD*ATSPDNRKSISG-------------SDNFQIIMRQIPCHDIHNLRIAVARL 323
Query: 288 QWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLME 347
+ + P+++ +A +A+ P+ +T+H+++DC +V EKL L
Sbjct: 322 ----------SSQ*LQSPSVLYREVTANQLAAWPI**-KTEHIELDCRIV*EKLPQNLFH 176
Query: 348 LFPISSQEQIADILTKALH-----PASFNHLIAKLSLLNIYQP 385
L +SS +AD +TK L + HL++ LS + QP
Sbjct: 175 LL-VSSSLHLADCVTKPLSILV*PNRTKEHLLSSLSECIVIQP 50
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,161,196
Number of Sequences: 36976
Number of extensions: 194713
Number of successful extensions: 934
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of query: 385
length of database: 9,014,727
effective HSP length: 98
effective length of query: 287
effective length of database: 5,391,079
effective search space: 1547239673
effective search space used: 1547239673
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146910.6